Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 34 - 141 | 5.8e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 155 |
| AciI | CCGC | 1 cut(s) | 35 |
| AcoI | YGGCCR | 1 cut(s) | 85 |
| AcuI | CTGAAG | 2 cut(s) | 113, 375 |
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 1 cut(s) | 385 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 83, 94, 359 |
| AgsI | TTSAA | 3 cut(s) | 333, 371, 380 |
| AjnI | CCWGG | 1 cut(s) | 207 |
| AluBI | AGCT | 3 cut(s) | 91, 116, 314 |
| AluI | AGCT | 3 cut(s) | 91, 116, 314 |
| AoxI | GGCC | 3 cut(s) | 29, 85, 348 |
| ApeKI | GCWGC | 2 cut(s) | 70, 113 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 198, 315, 375 |
| AspS9I | GGNCC | 1 cut(s) | 349 |
| BalI | TGGCCA | 1 cut(s) | 87 |
| BbsI | GAAGAC | 1 cut(s) | 280 |
| BbvI | GCAGC | 2 cut(s) | 82, 125 |
| BccI | CCATC | 2 cut(s) | 101, 419 |
| BciT130I | CCWGG | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 15, 78 |
| BisI | GCNGC | 2 cut(s) | 71, 114 |
| BlsI | GCNGC | 2 cut(s) | 72, 115 |
| Bme1390I | CCNGG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 349 |
| BmiI | GGNNCC | 1 cut(s) | 351 |
| BmrFI | CCNGG | 1 cut(s) | 209 |
| BpiI | GAAGAC | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 2 cut(s) | 219, 387 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 351, 381 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 83, 94, 359 |
| BseBI | CCWGG | 1 cut(s) | 209 |
| BseDI | CCNNGG | 2 cut(s) | 219, 387 |
| BseGI | GGATG | 1 cut(s) | 166 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 83, 94, 359 |
| BseXI | GCAGC | 2 cut(s) | 82, 125 |
| BshFI | GGCC | 3 cut(s) | 31, 87, 350 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 83, 94, 359 |
| BsmI | GAATGC | 1 cut(s) | 375 |
| BsnI | GGCC | 3 cut(s) | 31, 87, 350 |
| Bsp19I | CCATGG | 1 cut(s) | 387 |
| BspACI | CCGC | 1 cut(s) | 35 |
| BspANI | GGCC | 3 cut(s) | 31, 87, 350 |
| BspLI | GGNNCC | 1 cut(s) | 351 |
| BspQI | GCTCTTC | 1 cut(s) | 399 |
| BssECI | CCNNGG | 2 cut(s) | 219, 387 |
| BssT1I | CCWWGG | 2 cut(s) | 219, 387 |
| Bst2UI | CCWGG | 1 cut(s) | 209 |
| Bst6I | CTCTTC | 3 cut(s) | 33, 399, 448 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 89 |
| BstDEI | CTNAG | 1 cut(s) | 278 |
| BstDSI | CCRYGG | 1 cut(s) | 387 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 357 |
| BstF5I | GGATG | 1 cut(s) | 166 |
| BstNI | CCWGG | 1 cut(s) | 209 |
| BstSCI | CCNGG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 2 cut(s) | 82, 125 |
| BstV2I | GAAGAC | 1 cut(s) | 280 |
| BsuRI | GGCC | 3 cut(s) | 31, 87, 350 |
| BtgI | CCRYGG | 1 cut(s) | 387 |
| BtsCI | GGATG | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 89 |
| Cfr13I | GGNCC | 1 cut(s) | 349 |
| CsiI | ACCWGGT | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 384 |
| CviAII | CATG | 4 cut(s) | 11, 388, 419, 457 |
| CviQI | GTAC | 1 cut(s) | 384 |
| DdeI | CTNAG | 1 cut(s) | 278 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| EaeI | YGGCCR | 1 cut(s) | 85 |
| Eam1104I | CTCTTC | 3 cut(s) | 33, 399, 448 |
| EarI | CTCTTC | 3 cut(s) | 33, 399, 448 |
| Eco130I | CCWWGG | 2 cut(s) | 219, 387 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 375 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 357 |
| EcoRII | CCWGG | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 2 cut(s) | 219, 387 |
| ErhI | CCWWGG | 2 cut(s) | 219, 387 |
| FaeI | CATG | 4 cut(s) | 14, 391, 422, 460 |
| FaiI | YATR | 6 cut(s) | 12, 27, 155, 389, 420, 458 |
| FatI | CATG | 4 cut(s) | 10, 387, 418, 456 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 114 |
| FokI | GGATG | 1 cut(s) | 173 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 114 |
| FspBI | CTAG | 2 cut(s) | 15, 78 |
| GluI | GCNGC | 2 cut(s) | 71, 114 |
| HaeIII | GGCC | 3 cut(s) | 31, 87, 350 |
| Hin1II | CATG | 4 cut(s) | 14, 391, 422, 460 |
| HinfI | GANTC | 1 cut(s) | 296 |
| Hpy166II | GTNNAC | 2 cut(s) | 59, 439 |
| Hpy188I | TCNGA | 1 cut(s) | 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 50 |
| Hpy8I | GTNNAC | 2 cut(s) | 59, 439 |
| HpyAV | CCTTC | 3 cut(s) | 88, 350, 365 |
| HpyCH4IV | ACGT | 1 cut(s) | 430 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| HpyF3I | CTNAG | 1 cut(s) | 278 |
| HpySE526I | ACGT | 1 cut(s) | 430 |
| Hsp92II | CATG | 4 cut(s) | 14, 391, 422, 460 |
| LguI | GCTCTTC | 1 cut(s) | 399 |
| LpnPI | CCDG | 7 cut(s) | 35, 45, 101, 171, 194, 221, 366 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 125 |
| MabI | ACCWGGT | 1 cut(s) | 207 |
| MaeI | CTAG | 2 cut(s) | 15, 78 |
| MaeII | ACGT | 1 cut(s) | 430 |
| MboII | GAAGA | 4 cut(s) | 50, 285, 386, 435 |
| MlsI | TGGCCA | 1 cut(s) | 87 |
| MluCI | AATT | 5 cut(s) | 100, 177, 230, 240, 328 |
| MluNI | TGGCCA | 1 cut(s) | 87 |
| MlyI | GAGTC | 1 cut(s) | 305 |
| MnlI | CCTC | 5 cut(s) | 34, 57, 84, 226, 353 |
| Mox20I | TGGCCA | 1 cut(s) | 87 |
| MroXI | GAANNNNTTC | 3 cut(s) | 198, 315, 375 |
| MscI | TGGCCA | 1 cut(s) | 87 |
| MseI | TTAA | 5 cut(s) | 123, 176, 243, 327, 466 |
| Msp20I | TGGCCA | 1 cut(s) | 87 |
| MspA1I | CMGCKG | 2 cut(s) | 35, 91 |
| MspR9I | CCNGG | 1 cut(s) | 209 |
| Mva1269I | GAATGC | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 209 |
| NcoI | CCATGG | 1 cut(s) | 387 |
| NlaIII | CATG | 4 cut(s) | 14, 391, 422, 460 |
| NlaIV | GGNNCC | 1 cut(s) | 351 |
| PciSI | GCTCTTC | 1 cut(s) | 399 |
| PctI | GAATGC | 1 cut(s) | 375 |
| PdmI | GAANNNNTTC | 3 cut(s) | 198, 315, 375 |
| PkrI | GCNGC | 2 cut(s) | 72, 115 |
| PleI | GAGTC | 1 cut(s) | 304 |
| PpsI | GAGTC | 1 cut(s) | 304 |
| PsiI | TTATAA | 1 cut(s) | 155 |
| Psp6I | CCWGG | 1 cut(s) | 207 |
| PspGI | CCWGG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 1 cut(s) | 351 |
| PspPI | GGNCC | 1 cut(s) | 349 |
| PvuII | CAGCTG | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 385 |
| RsaNI | GTAC | 1 cut(s) | 384 |
| SapI | GCTCTTC | 1 cut(s) | 399 |
| SaqAI | TTAA | 5 cut(s) | 123, 176, 243, 327, 466 |
| SatI | GCNGC | 2 cut(s) | 71, 114 |
| Sau96I | GGNCC | 1 cut(s) | 349 |
| SchI | GAGTC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 1 cut(s) | 209 |
| SetI | ASST | 9 cut(s) | 45, 68, 93, 99, 118, 213, 249, 316, 433 |
| SexAI | ACCWGGT | 1 cut(s) | 207 |
| Sse9I | AATT | 5 cut(s) | 100, 177, 230, 240, 328 |
| SsiI | CCGC | 1 cut(s) | 35 |
| SspI | AATATT | 1 cut(s) | 403 |
| SspMI | CTAG | 2 cut(s) | 15, 78 |
| StyD4I | CCNGG | 1 cut(s) | 207 |
| StyI | CCWWGG | 2 cut(s) | 219, 387 |
| TaiI | ACGT | 1 cut(s) | 433 |
| TaqI | TCGA | 2 cut(s) | 267, 424 |
| TasI | AATT | 5 cut(s) | 100, 177, 230, 240, 328 |
| Tru1I | TTAA | 5 cut(s) | 123, 176, 243, 327, 466 |
| Tru9I | TTAA | 5 cut(s) | 123, 176, 243, 327, 466 |
| TseI | GCWGC | 2 cut(s) | 70, 113 |
| TspDTI | ATGAA | 1 cut(s) | 308 |
| TspGWI | ACGGA | 2 cut(s) | 76, 440 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 357 |
| XmnI | GAANNNNTTC | 3 cut(s) | 198, 315, 375 |
| XspI | CTAG | 2 cut(s) | 15, 78 |