ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 682 |
| AcsI | RAATTY | 1 cut(s) | 519 |
| AfaI | GTAC | 1 cut(s) | 256 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 682 |
| AflII | CTTAAG | 1 cut(s) | 502 |
| AgsI | TTSAA | 1 cut(s) | 239 |
| AluBI | AGCT | 3 cut(s) | 94, 495, 620 |
| AluI | AGCT | 3 cut(s) | 94, 495, 620 |
| AoxI | GGCC | 3 cut(s) | 328, 387, 662 |
| ApeKI | GCWGC | 1 cut(s) | 620 |
| ApoI | RAATTY | 1 cut(s) | 519 |
| AspLEI | GCGC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 2 cut(s) | 588, 662 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| BbvI | GCAGC | 1 cut(s) | 607 |
| BccI | CCATC | 2 cut(s) | 164, 356 |
| BfaI | CTAG | 4 cut(s) | 8, 332, 492, 615 |
| BfrI | CTTAAG | 1 cut(s) | 502 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 670 |
| BisI | GCNGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 1 cut(s) | 622 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmgT120I | GGNCC | 2 cut(s) | 588, 662 |
| BmiI | GGNNCC | 1 cut(s) | 674 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 23, 55 |
| BpmI | CTGGAG | 1 cut(s) | 73 |
| BpuEI | CTTGAG | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 1 cut(s) | 668 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 682 |
| Bse1I | ACTGG | 1 cut(s) | 615 |
| Bse3DI | GCAATG | 1 cut(s) | 328 |
| BseDI | CCNNGG | 1 cut(s) | 668 |
| BseGI | GGATG | 2 cut(s) | 348, 463 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 682 |
| BseMI | GCAATG | 1 cut(s) | 328 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseNI | ACTGG | 1 cut(s) | 615 |
| BseXI | GCAGC | 1 cut(s) | 607 |
| BseYI | CCCAGC | 1 cut(s) | 495 |
| BsgI | GTGCAG | 1 cut(s) | 656 |
| BshFI | GGCC | 3 cut(s) | 330, 389, 664 |
| BslFI | GGGAC | 1 cut(s) | 512 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 682 |
| BsmFI | GGGAC | 1 cut(s) | 512 |
| BsmI | GAATGC | 1 cut(s) | 119 |
| BsnI | GGCC | 3 cut(s) | 330, 389, 664 |
| Bsp143I | GATC | 1 cut(s) | 191 |
| BspANI | GGCC | 3 cut(s) | 330, 389, 664 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BspLI | GGNNCC | 1 cut(s) | 674 |
| BspTI | CTTAAG | 1 cut(s) | 502 |
| BsrDI | GCAATG | 1 cut(s) | 328 |
| BsrI | ACTGG | 1 cut(s) | 615 |
| BssECI | CCNNGG | 1 cut(s) | 668 |
| BssMI | GATC | 1 cut(s) | 191 |
| BssT1I | CCWWGG | 1 cut(s) | 668 |
| Bst4CI | ACNGT | 2 cut(s) | 215, 360 |
| Bst6I | CTCTTC | 1 cut(s) | 578 |
| BstAFI | CTTAAG | 1 cut(s) | 502 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 2 cut(s) | 112, 639 |
| BstDEI | CTNAG | 2 cut(s) | 384, 696 |
| BstF5I | GGATG | 2 cut(s) | 348, 463 |
| BstHHI | GCGC | 1 cut(s) | 153 |
| BstKTI | GATC | 1 cut(s) | 194 |
| BstMBI | GATC | 1 cut(s) | 191 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 116, 159, 327, 620, 670 |
| BstNSI | RCATGY | 1 cut(s) | 578 |
| BstV1I | GCAGC | 1 cut(s) | 607 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 598 |
| BsuRI | GGCC | 3 cut(s) | 330, 389, 664 |
| BtsCI | GGATG | 2 cut(s) | 348, 463 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 1 cut(s) | 453 |
| Cac8I | GCNNGC | 2 cut(s) | 112, 639 |
| CciI | TCATGA | 1 cut(s) | 166 |
| CfoI | GCGC | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 2 cut(s) | 588, 662 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 1 cut(s) | 255 |
| CviAII | CATG | 6 cut(s) | 116, 167, 258, 275, 575, 677 |
| CviQI | GTAC | 1 cut(s) | 255 |
| DdeI | CTNAG | 2 cut(s) | 384, 696 |
| DpnI | GATC | 1 cut(s) | 193 |
| DpnII | GATC | 1 cut(s) | 191 |
| DraI | TTTAAA | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 1 cut(s) | 578 |
| EarI | CTCTTC | 1 cut(s) | 578 |
| Eco130I | CCWWGG | 1 cut(s) | 668 |
| Eco147I | AGGCCT | 1 cut(s) | 389 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| EcoRI | GAATTC | 1 cut(s) | 519 |
| EcoT14I | CCWWGG | 1 cut(s) | 668 |
| EcoT22I | ATGCAT | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 668 |
| FaeI | CATG | 6 cut(s) | 119, 170, 261, 278, 578, 680 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 78, 110, 83, 115 |
| FaqI | GGGAC | 1 cut(s) | 512 |
| FatI | CATG | 6 cut(s) | 115, 166, 257, 274, 574, 676 |
| Fnu4HI | GCNGC | 1 cut(s) | 621 |
| FokI | GGATG | 2 cut(s) | 335, 470 |
| Fsp4HI | GCNGC | 1 cut(s) | 621 |
| FspBI | CTAG | 4 cut(s) | 8, 332, 492, 615 |
| GlaI | GCGC | 1 cut(s) | 152 |
| GluI | GCNGC | 1 cut(s) | 621 |
| GsaI | CCCAGC | 1 cut(s) | 499 |
| GsuI | CTGGAG | 1 cut(s) | 73 |
| HaeIII | GGCC | 3 cut(s) | 330, 389, 664 |
| HgaI | GACGC | 1 cut(s) | 128 |
| HhaI | GCGC | 1 cut(s) | 153 |
| Hin1II | CATG | 6 cut(s) | 119, 170, 261, 278, 578, 680 |
| Hin6I | GCGC | 1 cut(s) | 151 |
| HinP1I | GCGC | 1 cut(s) | 151 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HinfI | GANTC | 2 cut(s) | 32, 316 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 167, 524 |
| HpyAV | CCTTC | 1 cut(s) | 244 |
| HpyCH4III | ACNGT | 2 cut(s) | 215, 360 |
| HpyCH4IV | ACGT | 1 cut(s) | 644 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 461, 623, 637, 651 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 116, 159, 327, 620, 670 |
| HpyF3I | CTNAG | 2 cut(s) | 384, 696 |
| HpySE526I | ACGT | 1 cut(s) | 644 |
| Hsp92II | CATG | 6 cut(s) | 119, 170, 261, 278, 578, 680 |
| HspAI | GCGC | 1 cut(s) | 151 |
| Kzo9I | GATC | 1 cut(s) | 191 |
| LmnI | GCTCC | 1 cut(s) | 678 |
| LpnPI | CCDG | 5 cut(s) | 37, 387, 481, 596, 623 |
| Lsp1109I | GCAGC | 1 cut(s) | 607 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 4 cut(s) | 8, 332, 492, 615 |
| MaeII | ACGT | 1 cut(s) | 644 |
| MalI | GATC | 1 cut(s) | 193 |
| MboI | GATC | 1 cut(s) | 191 |
| MboII | GAAGA | 2 cut(s) | 592, 595 |
| MluCI | AATT | 4 cut(s) | 206, 282, 425, 519 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MnlI | CCTC | 6 cut(s) | 99, 379, 520, 579, 589, 675 |
| Mph1103I | ATGCAT | 1 cut(s) | 121 |
| MseI | TTAA | 6 cut(s) | 369, 392, 410, 465, 503, 560 |
| MspCI | CTTAAG | 1 cut(s) | 502 |
| Mva1269I | GAATGC | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 116, 159, 327, 620, 670 |
| NdeII | GATC | 1 cut(s) | 191 |
| NlaIII | CATG | 6 cut(s) | 119, 170, 261, 278, 578, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 674 |
| NsiI | ATGCAT | 1 cut(s) | 121 |
| NspI | RCATGY | 1 cut(s) | 578 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PceI | AGGCCT | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 119 |
| PfeI | GAWTC | 1 cut(s) | 316 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 682 |
| PkrI | GCNGC | 1 cut(s) | 622 |
| PleI | GAGTC | 1 cut(s) | 40 |
| PpsI | GAGTC | 1 cut(s) | 40 |
| PspFI | CCCAGC | 1 cut(s) | 495 |
| PspN4I | GGNNCC | 1 cut(s) | 674 |
| PspPI | GGNCC | 2 cut(s) | 588, 662 |
| RsaI | GTAC | 1 cut(s) | 256 |
| RsaNI | GTAC | 1 cut(s) | 255 |
| SaqAI | TTAA | 6 cut(s) | 369, 392, 410, 465, 503, 560 |
| SatI | GCNGC | 1 cut(s) | 621 |
| Sau3AI | GATC | 1 cut(s) | 191 |
| Sau96I | GGNCC | 2 cut(s) | 588, 662 |
| SchI | GAGTC | 1 cut(s) | 41 |
| SetI | ASST | 9 cut(s) | 13, 96, 130, 237, 497, 590, 600, 622, 647 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SinI | GGWCC | 1 cut(s) | 588 |
| SmlI | CTYRAG | 2 cut(s) | 502, 524 |
| SmoI | CTYRAG | 2 cut(s) | 502, 524 |
| Sse9I | AATT | 4 cut(s) | 206, 282, 425, 519 |
| SseBI | AGGCCT | 1 cut(s) | 389 |
| SspMI | CTAG | 4 cut(s) | 8, 332, 492, 615 |
| StuI | AGGCCT | 1 cut(s) | 389 |
| StyI | CCWWGG | 1 cut(s) | 668 |
| TaaI | ACNGT | 2 cut(s) | 215, 360 |
| TaiI | ACGT | 1 cut(s) | 647 |
| TaqI | TCGA | 2 cut(s) | 35, 181 |
| TasI | AATT | 4 cut(s) | 206, 282, 425, 519 |
| TfiI | GAWTC | 1 cut(s) | 316 |
| Tru1I | TTAA | 6 cut(s) | 369, 392, 410, 465, 503, 560 |
| Tru9I | TTAA | 6 cut(s) | 369, 392, 410, 465, 503, 560 |
| TscAI | CASTG | 1 cut(s) | 453 |
| TseI | GCWGC | 1 cut(s) | 620 |
| TspDTI | ATGAA | 4 cut(s) | 155, 329, 354, 557 |
| TspRI | CASTG | 1 cut(s) | 453 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 682 |
| Vha464I | CTTAAG | 1 cut(s) | 502 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XapI | RAATTY | 1 cut(s) | 519 |
| XceI | RCATGY | 1 cut(s) | 578 |
| XspI | CTAG | 4 cut(s) | 8, 332, 492, 615 |
| Zsp2I | ATGCAT | 1 cut(s) | 121 |