Rorug04G0440300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000072
Physical Location & Seq
Forward (+)
59719364 .. 59721579
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0440300.1

Sequence Viewer

Length: 1803 bp
ATGAAGATCGCGTTAGTGTTGCTTACCGTCTTCCTCAACTCGCTCCTCCTCTGCCGTTCGATCGAGGACGACCTCACCTGCCTCGCCGGCGTGAAGCGCTCACTCGCCGACCCCGACGGCCGGCTCAGCCAATGGAACTTGGCCAACAACTCCGTCGCCTCAATCTGCAAGCTCGTCGGAGTTTCGTGCTGGAACGAGAAGGAGAATCGGCTGCTCAGCCTCCAGCTGCCGTCCATGCACCTCGCCGGTCAGCTCCCTGAGTCGCTCAAGTACTGTCATAGCCTCCAAACCCTAGATCTCTCCGGAAATTCTCTCTCCGGTTCGTTGCCGCCGCAAATCTGCGATTGGCTCCCTTACCTTGTGACTCTAGATCTCTCTAATAACCATCTCTCCGGCTCCATTCCGCCGGAGATTGTCAACTGTAAGTTCTTGAATTCTCTGATTTTGAATGATAATCGTCTTTCCGGTTCGATTCCGTATGAGCTGGGCCGGCTCGACCGGTTGAAGAAATTTTCAGTGGCCAATAATGGCCTTTCCGGTACTATCCCGTCGGACTTGTCCAAATTCGAAAAGGATGATTTTGATGGGAACAGTGGGCTGTGTGGGAAGCCTCTTGGGTCTAAATGCGGTGGTCTGAGCAGCAAAAGCCTCGGTATTATAATCGCCGCCGGGGCTATTGGTGCGGCGGTGTCGCTGATTTTGGGGCTTGGGATTTGGTGGTGGTTCTTTGTTAGGGGAAGTAAGAAAAAGCAGAGCTTTGGTGAGAAAGGTGTGAGTGGCTGGGTTGGGTTGTTGAAGTCTCACAAGCTTGTTCAAGTGTCTCTATTTCAGAAACCGATTGTGAAAGTCCGGTTAGCTGATTTACTGGTGGCTACCAGCAATTTTGATTCCCAAAACATTGTCATTTCCGGTAGAACAGGGGTTTCTTACAAGGCGGTGTTGCCTGATGGGTCTGCATTGGCAATCAAGCGGCTTACTGGGTGTACACTCGGAGAGAAGCAGTTTAGGTTGGAGATGAATAGGTTGGGGCAGCTCAGGCATCCCAATTTGGTGCCTTTATTGGGGTTCTGTGTTGTGGAGGAAGAGAAGCTTTTGGTGTATAAGCACATGTATAATGGCACATTGTACTCTCAGTTGCATGGTAGTGGCAATGTGAGTAGCCAGTATGGTTTTTTGGATTGGTTGACACGGTTGAGGATCGGTGTGGGAGCAGCCAGAGGACTTGCTTGGCTGCACCATGCTTGCCAGCCGCCGCAGATGCACCAGAATATTAGCTCGAATGTGGTTCTTCTTGATTATGATTTTGAGGCTCGGATAACGGATTTTGGATTGGCGAGGCTGGTGGGTTCTCGTGATTCAAATGATAGCTCGTTTGTGAATGGGGATCTGGGAGAGATTGGTTATGTTGCTCCCGAGTACTCAAGCACAATGGTGGCATCGTTAAAAGGGGATGTCTACGGGTTCGGGGTAGTTCTTTTGGAATTGATTACTGGACAGAAACCTTTAGAAATCAGTAATGTAGTGGAGGGGTTCAAGGGGAATTTGGTGGATTGGGTCTCTCACTTATCAAACACTGGTCGAAGCGTTGATGCCATAGACAATGTATTAGCAGGGAAAGGTCATGATGATGAAATTTTGCAGTTCATGAGGGTGGCTTGCACTTGCGTGGTTGCTAGGCCAAAAGATAGGCCTTCTATGCATCAGGTTTACGAGTCATTGAAGAGCTTGGCCGATAAACATGGTTTCTCTGAACAGTATGATGAATTTCCATTGATGTTTGGCAAACAGGTTCCTGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

600

Amino Acids

65.46

Weight (kDa)

7.87

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 22 - 64 2.9e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 74 - 175 5.3e-06 Leucine-rich repeat region
Pkinase PF00069 303 - 571 3e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 316 - 573 6.2e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 1051
AccI GTMKAC 1 cut(s) 1455
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 2 cut(s) 1205, 1392
AcoI YGGCCR 4 cut(s) 118, 141, 519, 1728
AcsI RAATTY 7 cut(s) 307, 433, 509, 563, 1540, 1632, 1763
AfaI GTAC 5 cut(s) 272, 541, 985, 1127, 1418
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 120, 1061
AflIII ACRYGT 1 cut(s) 1107
AgeI ACCGGT 1 cut(s) 498
AgsI TTSAA 8 cut(s) 433, 448, 505, 796, 815, 1359, 1534, 1720
AleI CACNNNNGTG 2 cut(s) 1430, 1664
Alw26I GTCTC 3 cut(s) 804, 825, 1561
AlwI GGATC 2 cut(s) 1205, 1392
Ama87I CYCGRG 1 cut(s) 1412
Aor13HI TCCGGA 1 cut(s) 302
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 8 cut(s) 118, 141, 487, 519, 529, 1676, 1688, 1728
ApeKI GCWGC 6 cut(s) 211, 226, 639, 1030, 1211, 1231
ApoI RAATTY 7 cut(s) 307, 433, 509, 563, 1540, 1632, 1763
AsiGI ACCGGT 1 cut(s) 498
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 67, 773
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 1 cut(s) 1412
BalI TGGCCA 2 cut(s) 143, 521
BanI GGYRCC 1 cut(s) 1051
BauI CACGAG 1 cut(s) 1350
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 6 cut(s) 198, 213, 651, 1042, 1218, 1223
BccI CCATC 3 cut(s) 393, 578, 941
BceAI ACGGC 3 cut(s) 39, 133, 214
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 631, 665
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 3 cut(s) 804, 825, 1561
BfaI CTAG 3 cut(s) 293, 368, 1674
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 86
BglI GCCNNNNNGGC 2 cut(s) 87, 671
BglII AGATCT 2 cut(s) 295, 370
BlpI GCTNAGC 2 cut(s) 125, 215
BmcAI AGTACT 2 cut(s) 272, 1418
Bme1390I CCNGG 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 1412
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 4 cut(s) 350, 397, 1053, 1791
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 5 cut(s) 1048, 1248, 1445, 1579, 1708
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 1034
Bpu1102I GCTNAGC 2 cut(s) 125, 215
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 251, 1405
BpuMI CCSGG 1 cut(s) 670
BsaI GGTCTC 1 cut(s) 1561
BsaJI CCNNGG 2 cut(s) 649, 669
BsaWI WCCGGW 7 cut(s) 302, 317, 464, 498, 536, 849, 908
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 1061
Bse118I RCCGGY 5 cut(s) 86, 120, 245, 489, 498
Bse1I ACTGG 5 cut(s) 870, 982, 1162, 1495, 1579
Bse3DI GCAATG 1 cut(s) 1156
BseAI TCCGGA 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 649, 669
BseGI GGATG 3 cut(s) 580, 1039, 1456
BseLI CCNNNNNNNGG 2 cut(s) 120, 1061
BseMI GCAATG 1 cut(s) 1156
BseMII CTCAG 6 cut(s) 139, 229, 249, 626, 1048, 1145
BseNI ACTGG 5 cut(s) 870, 982, 1162, 1495, 1579
BseRI GAGGAG 2 cut(s) 35, 38
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 6 cut(s) 198, 213, 651, 1042, 1218, 1223
BseYI CCCAGC 2 cut(s) 484, 780
BsgI GTGCAG 1 cut(s) 1217
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 3 cut(s) 63, 121, 499
BshFI GGCC 8 cut(s) 120, 143, 489, 521, 531, 1678, 1690, 1730
BshNI GGYRCC 1 cut(s) 1051
BshTI ACCGGT 1 cut(s) 498
BsiEI CGRYCG 3 cut(s) 63, 121, 499
BsiHKCI CYCGRG 1 cut(s) 1412
BslI CCNNNNNNNGG 2 cut(s) 120, 1061
BsmAI GTCTC 3 cut(s) 804, 825, 1561
BsnI GGCC 8 cut(s) 120, 143, 489, 521, 531, 1678, 1690, 1730
Bso31I GGTCTC 1 cut(s) 1561
BsoBI CYCGRG 1 cut(s) 1412
Bsp119I TTCGAA 1 cut(s) 567
Bsp13I TCCGGA 1 cut(s) 302
Bsp1407I TGTACA 1 cut(s) 983
Bsp143I GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
Bsp1720I GCTNAGC 2 cut(s) 125, 215
BspANI GGCC 8 cut(s) 120, 143, 489, 521, 531, 1678, 1690, 1730
BspCNI CTCAG 6 cut(s) 138, 228, 250, 627, 1047, 1144
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 2 cut(s) 1621, 1644
BspLI GGNNCC 4 cut(s) 350, 397, 1053, 1791
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 1205, 1392
BspQI GCTCTTC 1 cut(s) 1715
BspT104I TTCGAA 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 1051
BspTNI GGTCTC 1 cut(s) 1561
BsrDI GCAATG 1 cut(s) 1156
BsrFI RCCGGY 5 cut(s) 86, 120, 245, 489, 498
BsrGI TGTACA 1 cut(s) 983
BsrI ACTGG 5 cut(s) 870, 982, 1162, 1495, 1579
BssAI RCCGGY 5 cut(s) 86, 120, 245, 489, 498
BssECI CCNNGG 2 cut(s) 649, 669
BssMI GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
BssSI CACGAG 1 cut(s) 1350
Bst2BI CACGAG 1 cut(s) 1350
Bst4CI ACNGT 6 cut(s) 28, 275, 422, 593, 1191, 1755
Bst6I CTCTTC 2 cut(s) 1077, 1715
BstAUI TGTACA 1 cut(s) 983
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 7 cut(s) 88, 122, 170, 491, 1243, 1247, 1657
BstDEI CTNAG 6 cut(s) 125, 215, 258, 635, 1034, 1131
BstF5I GGATG 3 cut(s) 580, 1039, 1456
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 6 cut(s) 9, 63, 298, 373, 1200, 1387
BstMAI GTCTC 3 cut(s) 804, 825, 1561
BstMBI GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
BstMCI CGRYCG 3 cut(s) 63, 121, 499
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 668
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 6 cut(s) 198, 213, 651, 1042, 1218, 1223
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 3 cut(s) 295, 370, 1384
BstYI RGATCY 3 cut(s) 295, 370, 1384
BstZI CGGCCG 1 cut(s) 118
BsuRI GGCC 8 cut(s) 120, 143, 489, 521, 531, 1678, 1690, 1730
BtsCI GGATG 3 cut(s) 580, 1039, 1456
BtsIMutI CAGTG 3 cut(s) 522, 598, 1572
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 7 cut(s) 88, 122, 170, 491, 1243, 1247, 1657
CciI TCATGA 2 cut(s) 1621, 1644
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 5 cut(s) 86, 120, 245, 489, 498
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 5 cut(s) 271, 540, 984, 1126, 1417
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 7 cut(s) 235, 1108, 1139, 1238, 1622, 1645, 1739
CviQI GTAC 5 cut(s) 271, 540, 984, 1126, 1417
DdeI CTNAG 6 cut(s) 125, 215, 258, 635, 1034, 1131
DpnI GATC 6 cut(s) 8, 62, 297, 372, 1199, 1386
DpnII GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
EaeI YGGCCR 4 cut(s) 118, 141, 519, 1728
EagI CGGCCG 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 1077, 1715
EarI CTCTTC 2 cut(s) 1077, 1715
EciI GGCGGA 1 cut(s) 393
EclXI CGGCCG 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 1690
Eco31I GGTCTC 1 cut(s) 1561
Eco47III AGCGCT 1 cut(s) 98
Eco52I CGGCCG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 1701
FaeI CATG 7 cut(s) 238, 1111, 1142, 1241, 1625, 1648, 1742
FalI AAGNNNNNCTT 4 cut(s) 740, 772, 1074, 1106
FatI CATG 7 cut(s) 234, 1107, 1138, 1237, 1621, 1644, 1738
FblI GTMKAC 1 cut(s) 1455
FokI GGATG 3 cut(s) 587, 1026, 1463
FspBI CTAG 3 cut(s) 293, 368, 1674
GlaI GCGC 1 cut(s) 98
GsaI CCCAGC 2 cut(s) 488, 784
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 8 cut(s) 120, 143, 489, 521, 531, 1678, 1690, 1730
HhaI GCGC 1 cut(s) 99
Hin1II CATG 7 cut(s) 238, 1111, 1142, 1241, 1625, 1648, 1742
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 418, 1185
HindII GTYRAC 2 cut(s) 418, 1185
HindIII AAGCTT 2 cut(s) 806, 1088
HinfI GANTC 8 cut(s) 205, 260, 364, 472, 887, 1355, 1712, 1796
HphI GGTGA 2 cut(s) 67, 773
Hpy166II GTNNAC 6 cut(s) 418, 984, 986, 1185, 1456, 1708
Hpy188I TCNGA 8 cut(s) 179, 441, 553, 636, 831, 992, 1314, 1750
Hpy8I GTNNAC 6 cut(s) 418, 984, 986, 1185, 1456, 1708
Hpy99I CGWCG 4 cut(s) 119, 158, 179, 553
HpyAV CCTTC 2 cut(s) 193, 1701
HpyCH4III ACNGT 6 cut(s) 28, 275, 422, 593, 1191, 1755
HpyCH4V TGCA 9 cut(s) 168, 238, 956, 1138, 1234, 1261, 1639, 1659, 1699
HpyF3I CTNAG 6 cut(s) 125, 215, 258, 635, 1034, 1131
Hsp92II CATG 7 cut(s) 238, 1111, 1142, 1241, 1625, 1648, 1742
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 302
KroI GCCGGC 3 cut(s) 86, 120, 489
KroNI GCCGGC 3 cut(s) 88, 122, 491
Kzo9I GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
LguI GCTCTTC 1 cut(s) 1715
LmnI GCTCC 6 cut(s) 48, 258, 354, 401, 1208, 1414
Lsp1109I GCAGC 6 cut(s) 198, 213, 651, 1042, 1218, 1223
LweI GCATC 5 cut(s) 1048, 1248, 1445, 1579, 1708
MaeI CTAG 3 cut(s) 293, 368, 1674
MaeIII GTNAC 1 cut(s) 361
MalI GATC 6 cut(s) 8, 62, 297, 372, 1199, 1386
MboI GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
MboII GAAGA 6 cut(s) 16, 22, 517, 1094, 1280, 1732
MflI RGATCY 3 cut(s) 295, 370, 1384
MlsI TGGCCA 2 cut(s) 143, 521
MluNI TGGCCA 2 cut(s) 143, 521
MlyI GAGTC 3 cut(s) 269, 358, 1721
MmeI TCCRAC 3 cut(s) 157, 531, 990
Mox20I TGGCCA 2 cut(s) 143, 521
Mph1103I ATGCAT 1 cut(s) 1701
MreI CGCCGGCG 1 cut(s) 86
MroI TCCGGA 1 cut(s) 302
MroNI GCCGGC 3 cut(s) 86, 120, 489
MscI TGGCCA 2 cut(s) 143, 521
MseI TTAA 1 cut(s) 1442
MslI CAYNNNNRTG 5 cut(s) 1143, 1430, 1626, 1649, 1664
Msp20I TGGCCA 2 cut(s) 143, 521
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 11
NaeI GCCGGC 3 cut(s) 88, 122, 491
NciI CCSGG 1 cut(s) 670
NdeII GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
NgoMIV GCCGGC 3 cut(s) 86, 120, 489
NlaIII CATG 7 cut(s) 238, 1111, 1142, 1241, 1625, 1648, 1742
NlaIV GGNNCC 4 cut(s) 350, 397, 1053, 1791
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 1701
NspI RCATGY 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 567
OliI CACNNNNGTG 2 cut(s) 1430, 1664
PagI TCATGA 2 cut(s) 1621, 1644
PaqCI CACCTGC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 1690
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 1715
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 3 cut(s) 88, 122, 491
PfeI GAWTC 5 cut(s) 205, 472, 887, 1355, 1796
PinAI ACCGGT 1 cut(s) 498
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 3 cut(s) 268, 358, 1720
PpsI GAGTC 3 cut(s) 268, 358, 1720
PscI ACATGT 1 cut(s) 1107
PsiI TTATAA 1 cut(s) 659
PspFI CCCAGC 2 cut(s) 484, 780
PspN4I GGNNCC 4 cut(s) 350, 397, 1053, 1791
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 3 cut(s) 295, 370, 1384
PvuI CGATCG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 5 cut(s) 272, 541, 985, 1127, 1418
RsaNI GTAC 5 cut(s) 271, 540, 984, 1126, 1417
RseI CAYNNNNRTG 5 cut(s) 1143, 1430, 1626, 1649, 1664
SapI GCTCTTC 1 cut(s) 1715
SaqAI TTAA 1 cut(s) 1442
Sau3AI GATC 6 cut(s) 6, 60, 295, 370, 1197, 1384
Sau96I GGNCC 1 cut(s) 487
ScaI AGTACT 2 cut(s) 272, 1418
SchI GAGTC 3 cut(s) 269, 358, 1721
ScrFI CCNGG 1 cut(s) 670
SfaNI GCATC 5 cut(s) 1048, 1248, 1445, 1579, 1708
SfuI TTCGAA 1 cut(s) 567
SgrAI CRCCGGYG 1 cut(s) 86
SmiMI CAYNNNNRTG 5 cut(s) 1143, 1430, 1626, 1649, 1664
SmlI CTYRAG 2 cut(s) 266, 1420
SmoI CTYRAG 2 cut(s) 266, 1420
SseBI AGGCCT 1 cut(s) 1690
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 293, 368, 1674
StuI AGGCCT 1 cut(s) 1690
StyD4I CCNGG 1 cut(s) 668
TaaI ACNGT 6 cut(s) 28, 275, 422, 593, 1191, 1755
TaqI TCGA 7 cut(s) 59, 63, 470, 495, 567, 1277, 1579
TatI WGTACW 4 cut(s) 270, 983, 1125, 1416
TauI GCSGC 7 cut(s) 331, 334, 668, 686, 973, 1252, 1255
TfiI GAWTC 5 cut(s) 205, 472, 887, 1355, 1796
Tru1I TTAA 1 cut(s) 1442
Tru9I TTAA 1 cut(s) 1442
TscAI CASTG 3 cut(s) 522, 598, 1579
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 6 cut(s) 211, 226, 639, 1030, 1211, 1231
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 17, 1031, 1633, 1644, 1776
TspGWI ACGGA 3 cut(s) 142, 465, 1334
TspRI CASTG 3 cut(s) 522, 598, 1579
XapI RAATTY 7 cut(s) 307, 433, 509, 563, 1540, 1632, 1763
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 1 cut(s) 1111
XmiI GTMKAC 1 cut(s) 1455
XspI CTAG 3 cut(s) 293, 368, 1674
ZrmI AGTACT 2 cut(s) 272, 1418
Zsp2I ATGCAT 1 cut(s) 1701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.