ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MIP | PF00230 | 51 - 283 | 4.6e-38 | Major intrinsic protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 443 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 655 |
| AccII | CGCG | 2 cut(s) | 144, 299 |
| AccIII | TCCGGA | 1 cut(s) | 332 |
| AciI | CCGC | 3 cut(s) | 299, 366, 640 |
| AclWI | GGATC | 1 cut(s) | 563 |
| AcoI | YGGCCR | 1 cut(s) | 814 |
| AcuI | CTGAAG | 1 cut(s) | 111 |
| AcvI | CACGTG | 1 cut(s) | 901 |
| AfaI | GTAC | 2 cut(s) | 410, 869 |
| AfeI | AGCGCT | 1 cut(s) | 204 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 332, 517, 655, 819, 904 |
| AgsI | TTSAA | 2 cut(s) | 482, 928 |
| AjnI | CCWGG | 2 cut(s) | 282, 567 |
| AleI | CACNNNNGTG | 1 cut(s) | 163 |
| AluBI | AGCT | 5 cut(s) | 182, 187, 401, 767, 877 |
| AluI | AGCT | 5 cut(s) | 182, 187, 401, 767, 877 |
| Alw26I | GTCTC | 2 cut(s) | 239, 554 |
| AlwI | GGATC | 1 cut(s) | 563 |
| Ama87I | CYCGRG | 2 cut(s) | 525, 581 |
| Aor13HI | TCCGGA | 1 cut(s) | 332 |
| Aor51HI | AGCGCT | 1 cut(s) | 204 |
| ApaI | GGGCCC | 2 cut(s) | 533, 543 |
| ApeKI | GCWGC | 3 cut(s) | 200, 368, 401 |
| AseI | ATTAAT | 1 cut(s) | 68 |
| AspLEI | GCGC | 2 cut(s) | 144, 205 |
| AsuHPI | GGTGA | 1 cut(s) | 349 |
| AvaI | CYCGRG | 2 cut(s) | 525, 581 |
| AvaII | GGWCC | 2 cut(s) | 670, 810 |
| BaeGI | GKGCMC | 2 cut(s) | 533, 543 |
| BanI | GGYRCC | 1 cut(s) | 443 |
| BanII | GRGCYC | 2 cut(s) | 533, 543 |
| BauI | CACGAG | 1 cut(s) | 396 |
| BbrPI | CACGTG | 1 cut(s) | 901 |
| BbsI | GAAGAC | 2 cut(s) | 92, 944 |
| BbvI | GCAGC | 3 cut(s) | 212, 380, 388 |
| BccI | CCATC | 3 cut(s) | 19, 551, 619 |
| BceAI | ACGGC | 2 cut(s) | 213, 389 |
| BciT130I | CCWGG | 2 cut(s) | 284, 569 |
| BcoDI | GTCTC | 2 cut(s) | 239, 554 |
| BfaI | CTAG | 3 cut(s) | 179, 440, 768 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfoI | RGCGCY | 1 cut(s) | 206 |
| BisI | GCNGC | 4 cut(s) | 201, 300, 369, 402 |
| BlpI | GCTNAGC | 1 cut(s) | 183 |
| BlsI | GCNGC | 4 cut(s) | 202, 301, 370, 403 |
| Bme1390I | CCNGG | 2 cut(s) | 284, 569 |
| Bme18I | GGWCC | 2 cut(s) | 670, 810 |
| BmeT110I | CYCGRG | 2 cut(s) | 525, 581 |
| BmiI | GGNNCC | 5 cut(s) | 445, 530, 531, 541, 800 |
| BmrFI | CCNGG | 2 cut(s) | 284, 569 |
| BmrI | ACTGGG | 1 cut(s) | 829 |
| BmsI | GCATC | 3 cut(s) | 182, 390, 761 |
| BmuI | ACTGGG | 1 cut(s) | 829 |
| BpiI | GAAGAC | 2 cut(s) | 92, 944 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 160, 192 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 183 |
| BpuEI | CTTGAG | 1 cut(s) | 440 |
| BsaAI | YACGTR | 1 cut(s) | 901 |
| BsaI | GGTCTC | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 5 cut(s) | 447, 516, 643, 654, 775 |
| BsaWI | WCCGGW | 1 cut(s) | 332 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 332, 517, 655, 819, 904 |
| Bse118I | RCCGGY | 1 cut(s) | 812 |
| Bse1I | ACTGG | 2 cut(s) | 378, 824 |
| Bse3DI | GCAATG | 1 cut(s) | 428 |
| BseAI | TCCGGA | 1 cut(s) | 332 |
| BseBI | CCWGG | 2 cut(s) | 284, 569 |
| BseDI | CCNNGG | 5 cut(s) | 447, 516, 643, 654, 775 |
| BseGI | GGATG | 1 cut(s) | 630 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 332, 517, 655, 819, 904 |
| BseMI | GCAATG | 1 cut(s) | 428 |
| BseMII | CTCAG | 2 cut(s) | 174, 270 |
| BseNI | ACTGG | 2 cut(s) | 378, 824 |
| BseRI | GAGGAG | 2 cut(s) | 226, 447 |
| BseSI | GKGCMC | 2 cut(s) | 533, 543 |
| BseXI | GCAGC | 3 cut(s) | 212, 380, 388 |
| BseYI | CCCAGC | 3 cut(s) | 746, 763, 781 |
| Bsh1236I | CGCG | 2 cut(s) | 144, 299 |
| Bsh1285I | CGRYCG | 1 cut(s) | 552 |
| BshNI | GGYRCC | 1 cut(s) | 443 |
| BsiEI | CGRYCG | 1 cut(s) | 552 |
| BsiHKCI | CYCGRG | 2 cut(s) | 525, 581 |
| BsiSI | CCGG | 2 cut(s) | 333, 813 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 332, 517, 655, 819, 904 |
| BsmAI | GTCTC | 2 cut(s) | 239, 554 |
| BsmI | GAATGC | 2 cut(s) | 488, 699 |
| Bso31I | GGTCTC | 1 cut(s) | 239 |
| BsoBI | CYCGRG | 2 cut(s) | 525, 581 |
| Bsp120I | GGGCCC | 2 cut(s) | 529, 539 |
| Bsp1286I | GDGCHC | 2 cut(s) | 533, 543 |
| Bsp13I | TCCGGA | 1 cut(s) | 332 |
| Bsp1407I | TGTACA | 1 cut(s) | 408 |
| Bsp143I | GATC | 2 cut(s) | 231, 555 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 183 |
| Bsp19I | CCATGG | 1 cut(s) | 654 |
| BspACI | CCGC | 3 cut(s) | 299, 366, 640 |
| BspCNI | CTCAG | 2 cut(s) | 175, 269 |
| BspEI | TCCGGA | 1 cut(s) | 332 |
| BspFNI | CGCG | 2 cut(s) | 144, 299 |
| BspLI | GGNNCC | 5 cut(s) | 445, 530, 531, 541, 800 |
| BspPI | GGATC | 1 cut(s) | 563 |
| BspT107I | GGYRCC | 1 cut(s) | 443 |
| BspTNI | GGTCTC | 1 cut(s) | 239 |
| BsrDI | GCAATG | 1 cut(s) | 428 |
| BsrFI | RCCGGY | 1 cut(s) | 812 |
| BsrGI | TGTACA | 1 cut(s) | 408 |
| BsrI | ACTGG | 2 cut(s) | 378, 824 |
| BssAI | RCCGGY | 1 cut(s) | 812 |
| BssECI | CCNNGG | 5 cut(s) | 447, 516, 643, 654, 775 |
| BssMI | GATC | 2 cut(s) | 231, 555 |
| BssSI | CACGAG | 1 cut(s) | 396 |
| BssT1I | CCWWGG | 3 cut(s) | 447, 643, 654 |
| Bst2BI | CACGAG | 1 cut(s) | 396 |
| Bst2UI | CCWGG | 2 cut(s) | 284, 569 |
| Bst4CI | ACNGT | 3 cut(s) | 517, 550, 733 |
| Bst6I | CTCTTC | 2 cut(s) | 58, 948 |
| BstAUI | TGTACA | 1 cut(s) | 408 |
| BstBAI | YACGTR | 1 cut(s) | 901 |
| BstC8I | GCNNGC | 1 cut(s) | 140 |
| BstDEI | CTNAG | 2 cut(s) | 183, 256 |
| BstDSI | CCRYGG | 2 cut(s) | 516, 654 |
| BstF5I | GGATG | 1 cut(s) | 630 |
| BstFNI | CGCG | 2 cut(s) | 144, 299 |
| BstH2I | RGCGCY | 1 cut(s) | 206 |
| BstHHI | GCGC | 2 cut(s) | 144, 205 |
| BstKTI | GATC | 2 cut(s) | 234, 558 |
| BstMAI | GTCTC | 2 cut(s) | 239, 554 |
| BstMBI | GATC | 2 cut(s) | 231, 555 |
| BstMCI | CGRYCG | 1 cut(s) | 552 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 179, 221, 296, 458 |
| BstNI | CCWGG | 2 cut(s) | 284, 569 |
| BstSCI | CCNGG | 2 cut(s) | 282, 567 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstSLI | GKGCMC | 2 cut(s) | 533, 543 |
| BstUI | CGCG | 2 cut(s) | 144, 299 |
| BstV1I | GCAGC | 3 cut(s) | 212, 380, 388 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 944 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 165 |
| BtgI | CCRYGG | 2 cut(s) | 516, 654 |
| BtgZI | GCGATG | 1 cut(s) | 280 |
| BtsCI | GGATG | 1 cut(s) | 630 |
| BtsIMutI | CAGTG | 3 cut(s) | 371, 738, 817 |
| Cac8I | GCNNGC | 1 cut(s) | 140 |
| CfoI | GCGC | 2 cut(s) | 144, 205 |
| Cfr10I | RCCGGY | 1 cut(s) | 812 |
| CseI | GACGC | 2 cut(s) | 230, 415 |
| Csp6I | GTAC | 2 cut(s) | 409, 868 |
| CviAII | CATG | 4 cut(s) | 44, 61, 418, 655 |
| CviQI | GTAC | 2 cut(s) | 409, 868 |
| DdeI | CTNAG | 2 cut(s) | 183, 256 |
| DpnI | GATC | 2 cut(s) | 233, 557 |
| DpnII | GATC | 2 cut(s) | 231, 555 |
| EaeI | YGGCCR | 1 cut(s) | 814 |
| Eam1104I | CTCTTC | 2 cut(s) | 58, 948 |
| EarI | CTCTTC | 2 cut(s) | 58, 948 |
| Eco130I | CCWWGG | 3 cut(s) | 447, 643, 654 |
| Eco24I | GRGCYC | 2 cut(s) | 533, 543 |
| Eco31I | GGTCTC | 1 cut(s) | 239 |
| Eco32I | GATATC | 1 cut(s) | 922 |
| Eco47I | GGWCC | 2 cut(s) | 670, 810 |
| Eco47III | AGCGCT | 1 cut(s) | 204 |
| Eco57I | CTGAAG | 1 cut(s) | 111 |
| Eco72I | CACGTG | 1 cut(s) | 901 |
| Eco88I | CYCGRG | 2 cut(s) | 525, 581 |
| EcoO109I | RGGNCCY | 3 cut(s) | 529, 539, 571 |
| EcoRII | CCWGG | 2 cut(s) | 282, 567 |
| EcoRV | GATATC | 1 cut(s) | 922 |
| EcoT14I | CCWWGG | 3 cut(s) | 447, 643, 654 |
| EcoT38I | GRGCYC | 2 cut(s) | 533, 543 |
| ErhI | CCWWGG | 3 cut(s) | 447, 643, 654 |
| FaeI | CATG | 4 cut(s) | 47, 64, 421, 658 |
| FaiI | YATR | 9 cut(s) | 45, 62, 218, 419, 592, 622, 656, 668, 933 |
| FatI | CATG | 4 cut(s) | 43, 60, 417, 654 |
| Fnu4HI | GCNGC | 4 cut(s) | 201, 300, 369, 402 |
| FokI | GGATG | 1 cut(s) | 637 |
| FriOI | GRGCYC | 2 cut(s) | 533, 543 |
| Fsp4HI | GCNGC | 4 cut(s) | 201, 300, 369, 402 |
| FspBI | CTAG | 3 cut(s) | 179, 440, 768 |
| GlaI | GCGC | 2 cut(s) | 143, 204 |
| GluI | GCNGC | 4 cut(s) | 201, 300, 369, 402 |
| GsaI | CCCAGC | 3 cut(s) | 750, 767, 785 |
| HaeII | RGCGCY | 1 cut(s) | 206 |
| HapII | CCGG | 2 cut(s) | 333, 813 |
| HgaI | GACGC | 2 cut(s) | 230, 415 |
| HhaI | GCGC | 2 cut(s) | 144, 205 |
| Hin1II | CATG | 4 cut(s) | 47, 64, 421, 658 |
| Hin6I | GCGC | 2 cut(s) | 142, 203 |
| HinP1I | GCGC | 2 cut(s) | 142, 203 |
| HincII | GTYRAC | 2 cut(s) | 469, 890 |
| HindII | GTYRAC | 2 cut(s) | 469, 890 |
| HinfI | GANTC | 2 cut(s) | 304, 940 |
| HpaI | GTTAAC | 1 cut(s) | 469 |
| HpaII | CCGG | 2 cut(s) | 333, 813 |
| HphI | GGTGA | 1 cut(s) | 349 |
| Hpy166II | GTNNAC | 3 cut(s) | 409, 469, 890 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 431, 686 |
| Hpy188III | TCNNGA | 7 cut(s) | 333, 396, 553, 559, 583, 715, 808 |
| Hpy8I | GTNNAC | 3 cut(s) | 409, 469, 890 |
| Hpy99I | CGWCG | 1 cut(s) | 431 |
| HpyAV | CCTTC | 3 cut(s) | 89, 400, 730 |
| HpyCH4III | ACNGT | 3 cut(s) | 517, 550, 733 |
| HpyCH4IV | ACGT | 2 cut(s) | 870, 900 |
| HpyCH4V | TGCA | 3 cut(s) | 421, 507, 594 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 179, 221, 296, 458 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 256 |
| HpySE526I | ACGT | 2 cut(s) | 870, 900 |
| Hsp92II | CATG | 4 cut(s) | 47, 64, 421, 658 |
| HspAI | GCGC | 2 cut(s) | 142, 203 |
| Kpn2I | TCCGGA | 1 cut(s) | 332 |
| KspAI | GTTAAC | 1 cut(s) | 469 |
| Kzo9I | GATC | 2 cut(s) | 231, 555 |
| Lsp1109I | GCAGC | 3 cut(s) | 212, 380, 388 |
| LweI | GCATC | 3 cut(s) | 182, 390, 761 |
| MaeI | CTAG | 3 cut(s) | 179, 440, 768 |
| MaeII | ACGT | 2 cut(s) | 870, 900 |
| MaeIII | GTNAC | 1 cut(s) | 724 |
| MalI | GATC | 2 cut(s) | 233, 557 |
| MboI | GATC | 2 cut(s) | 231, 555 |
| MboII | GAAGA | 9 cut(s) | 44, 45, 97, 104, 112, 494, 916, 935, 949 |
| MfeI | CAATTG | 1 cut(s) | 225 |
| MhlI | GDGCHC | 2 cut(s) | 533, 543 |
| MluCI | AATT | 2 cut(s) | 225, 312 |
| MlyI | GAGTC | 1 cut(s) | 934 |
| MmeI | TCCRAC | 2 cut(s) | 409, 733 |
| MroI | TCCGGA | 1 cut(s) | 332 |
| MseI | TTAA | 2 cut(s) | 68, 468 |
| MslI | CAYNNNNRTG | 3 cut(s) | 163, 416, 704 |
| MspI | CCGG | 2 cut(s) | 333, 813 |
| MspR9I | CCNGG | 2 cut(s) | 284, 569 |
| MunI | CAATTG | 1 cut(s) | 225 |
| Mva1269I | GAATGC | 2 cut(s) | 488, 699 |
| MvaI | CCWGG | 2 cut(s) | 284, 569 |
| MvnI | CGCG | 2 cut(s) | 144, 299 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 179, 221, 296, 458 |
| NcoI | CCATGG | 1 cut(s) | 654 |
| NdeII | GATC | 2 cut(s) | 231, 555 |
| NlaIII | CATG | 4 cut(s) | 47, 64, 421, 658 |
| NlaIV | GGNNCC | 5 cut(s) | 445, 530, 531, 541, 800 |
| NmeAIII | GCCGAG | 1 cut(s) | 756 |
| OliI | CACNNNNGTG | 1 cut(s) | 163 |
| PaeR7I | CTCGAG | 1 cut(s) | 581 |
| PctI | GAATGC | 2 cut(s) | 488, 699 |
| PfeI | GAWTC | 1 cut(s) | 304 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 655 |
| PkrI | GCNGC | 4 cut(s) | 202, 301, 370, 403 |
| PleI | GAGTC | 1 cut(s) | 934 |
| PmaCI | CACGTG | 1 cut(s) | 901 |
| PmlI | CACGTG | 1 cut(s) | 901 |
| PpsI | GAGTC | 1 cut(s) | 934 |
| Ppu21I | YACGTR | 1 cut(s) | 901 |
| PshBI | ATTAAT | 1 cut(s) | 68 |
| Psp6I | CCWGG | 2 cut(s) | 282, 567 |
| PspCI | CACGTG | 1 cut(s) | 901 |
| PspFI | CCCAGC | 3 cut(s) | 746, 763, 781 |
| PspGI | CCWGG | 2 cut(s) | 282, 567 |
| PspN4I | GGNNCC | 5 cut(s) | 445, 530, 531, 541, 800 |
| PspOMI | GGGCCC | 2 cut(s) | 529, 539 |
| RsaI | GTAC | 2 cut(s) | 410, 869 |
| RsaNI | GTAC | 2 cut(s) | 409, 868 |
| RseI | CAYNNNNRTG | 3 cut(s) | 163, 416, 704 |
| SaqAI | TTAA | 2 cut(s) | 68, 468 |
| SatI | GCNGC | 4 cut(s) | 201, 300, 369, 402 |
| Sau3AI | GATC | 2 cut(s) | 231, 555 |
| SchI | GAGTC | 1 cut(s) | 934 |
| ScrFI | CCNGG | 2 cut(s) | 284, 569 |
| SduI | GDGCHC | 2 cut(s) | 533, 543 |
| SfaNI | GCATC | 3 cut(s) | 182, 390, 761 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| Sfr274I | CTCGAG | 1 cut(s) | 581 |
| SinI | GGWCC | 2 cut(s) | 670, 810 |
| SlaI | CTCGAG | 1 cut(s) | 581 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 163, 416, 704 |
| SmlI | CTYRAG | 2 cut(s) | 455, 581 |
| SmoI | CTYRAG | 2 cut(s) | 455, 581 |
| Sse9I | AATT | 2 cut(s) | 225, 312 |
| SsiI | CCGC | 3 cut(s) | 299, 366, 640 |
| SspMI | CTAG | 3 cut(s) | 179, 440, 768 |
| StyD4I | CCNGG | 2 cut(s) | 282, 567 |
| StyI | CCWWGG | 3 cut(s) | 447, 643, 654 |
| TaaI | ACNGT | 3 cut(s) | 517, 550, 733 |
| TaiI | ACGT | 2 cut(s) | 873, 903 |
| TaqI | TCGA | 5 cut(s) | 558, 582, 617, 633, 716 |
| TasI | AATT | 2 cut(s) | 225, 312 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TauI | GCSGC | 1 cut(s) | 302 |
| TfiI | GAWTC | 1 cut(s) | 304 |
| Tru1I | TTAA | 2 cut(s) | 68, 468 |
| Tru9I | TTAA | 2 cut(s) | 68, 468 |
| TscAI | CASTG | 3 cut(s) | 378, 738, 824 |
| TseI | GCWGC | 3 cut(s) | 200, 368, 401 |
| TspDTI | ATGAA | 3 cut(s) | 32, 406, 773 |
| TspRI | CASTG | 3 cut(s) | 378, 738, 824 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 655 |
| VpaK11BI | GGWCC | 2 cut(s) | 670, 810 |
| VspI | ATTAAT | 1 cut(s) | 68 |
| XhoI | CTCGAG | 1 cut(s) | 581 |
| XspI | CTAG | 3 cut(s) | 179, 440, 768 |