FvH4_5g25821

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000072
Physical Location & Seq
Reverse (-)
17326109 .. 17327891
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25821.t1

Sequence Viewer

Length: 1314 bp
ATGTTCAAGAGGATTCACGAGCGACTCGACCAACATTTGCAGGGATGGCAGTCGAGGCGGCTCTCCAAGGCTGGAAAAACAATATTAATAAAGGCTATTGCGCAGGCTATTCCCTCTTACACCATGTCAGTTTTAAAGTTATCAAAAGAATTTTGTCGTACTTATCAATCGAAGGTAGCTAATTATTGGTGGGGATCTGGTGGGAAGAAAAATGCACTACTAGCAAAAACTGTTTGGAGGATCGTAATGCAGCTGGACTCTCTAGCCAATAGGATTTTACAAGCTAAGTATGTTCATGGTGGAGACTGGGCAGCGACACCAATTGGACCAAAACTATCTTTCATTTGGAGAAGCTTGGTGTGGGGGAAAGAGCTTTTATGTGCTGTAACTCCACGGTTTATGGATAGCAACACTAGAGTGAGTATTCTGATGACGAGTCCAGGTATGTGGGATGTAAATTTTATTCAAACTCACTTCCTTCCTGTGGATGTGGATAAAATTTTGTCCATTCCAGTATGTGAAAAGAGTGGAAGTGATGTAGCTATTTGGCCCTACACAAATGATGGATATTACACTGTGAAATCTGGTTACTGGTTGGCAATGGAGTTAAAACAGGTGGGAAAGAGCACGAGCAGTAGTGGCAATGGAGTATTATCTGGGGTCTCTCAGTCCCAAACAAAGTCAAGCTTTTTCTTTGGAGAGCTTGTCATGCCTTCTTGCTTTGTCTTGAGCATTTGTTTAAACGAAAAGTGTGCTCTTCAGATATTTGTGTCTTTTAGTGATCTCTTACATAGAGTGGCTATAGAGGGCACGAATAAAGAATTGGAGTTTTTTGGATTAGTTTGTTGGTGGAACTGGGAGTGTAGGAATGATACTATGCATGGTAAGGAGGAACTGAAGCTTGATAACTTGTCCATCGGTGTCATTAATACTTCTAGTTCTCTATTGTATTTTGATTGGGCTATGGATAAGTTAAATGGAAGAGTGGGAGTAGGAGCTGTGGTGTTGAACCTAGAACATGGCCTTCTAGGTGCCTTATCAATACCACTTCCTCTTTCTCAAAATCCAAAAGCCACTGAAGCACTTGCTTTGTGGACTCGTGGTTGGGACTTCAGCGAGATAGGAGGCGTTCTTGATGCAATGAGGTTGATTATGACTGATTTTGAGATAGTTTCGTGGAGGCATGTGAAGAAACGTTTTAATGTAGTAGCACATGAACTAGCTAGAAGGGCTTTGTCATTAACAGAAGGTTGGCTTTGCAAGGAGCAAGGGCCTAAATGGCTCTTTCAGTTAATTGCTGGTAGTAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

438

Amino Acids

49.2

Weight (kDa)

9.15

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 1031
AciI CCGC 1 cut(s) 58
AclI AACGTT 1 cut(s) 1195
AclWI GGATC 2 cut(s) 202, 248
AcsI RAATTY 3 cut(s) 149, 457, 498
AcuI CTGAAG 4 cut(s) 743, 917, 1096, 1098
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 3 cut(s) 7, 467, 1009
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AleI CACNNNNGTG 1 cut(s) 416
Alw21I GWGCWC 2 cut(s) 629, 757
Alw26I GTCTC 2 cut(s) 297, 667
AlwI GGATC 2 cut(s) 202, 248
AoxI GGCC 3 cut(s) 548, 1021, 1271
ApeKI GCWGC 2 cut(s) 250, 311
ApoI RAATTY 3 cut(s) 149, 457, 498
AseI ATTAAT 2 cut(s) 86, 927
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 326, 549, 1271
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 812
BanI GGYRCC 1 cut(s) 1031
BauI CACGAG 3 cut(s) 17, 628, 1098
Bbv12I GWGCWC 2 cut(s) 629, 757
BbvI GCAGC 2 cut(s) 262, 323
BccI CCATC 3 cut(s) 39, 557, 923
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 297, 667
BfaI CTAG 8 cut(s) 221, 263, 414, 936, 1013, 1028, 1220, 1224
BfmI CTRYAG 1 cut(s) 801
BglI GCCNNNNNGGC 1 cut(s) 1279
BisI GCNGC 3 cut(s) 59, 251, 312
BlsI GCNGC 3 cut(s) 60, 252, 313
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 326, 549, 1271
BmiI GGNNCC 1 cut(s) 1033
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 2 cut(s) 316, 865
BmsI GCATC 1 cut(s) 1126
BmuI ACTGGG 2 cut(s) 316, 865
BpuEI CTTGAG 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 66, 392
BsaXI ACNNNNNCTCC 4 cut(s) 690, 720, 987, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 4 cut(s) 311, 512, 596, 860
Bse3DI GCAATG 3 cut(s) 606, 649, 1146
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 66, 392
BseGI GGATG 3 cut(s) 50, 457, 493
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 3 cut(s) 606, 649, 1146
BseMII CTCAG 1 cut(s) 680
BseNI ACTGG 4 cut(s) 311, 512, 596, 860
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 2 cut(s) 262, 323
BshFI GGCC 3 cut(s) 550, 1023, 1273
BshNI GGYRCC 1 cut(s) 1031
BsiHKAI GWGCWC 2 cut(s) 629, 757
BslFI GGGAC 2 cut(s) 655, 1121
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 297, 667
BsmFI GGGAC 2 cut(s) 655, 1121
BsnI GGCC 3 cut(s) 550, 1023, 1273
Bso31I GGTCTC 1 cut(s) 667
Bsp1286I GDGCHC 3 cut(s) 629, 757, 812
Bsp143I GATC 3 cut(s) 194, 240, 781
BspACI CCGC 1 cut(s) 58
BspANI GGCC 3 cut(s) 550, 1023, 1273
BspCNI CTCAG 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 1033
BspPI GGATC 2 cut(s) 202, 248
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 1031
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 3 cut(s) 606, 649, 1146
BsrI ACTGG 4 cut(s) 311, 512, 596, 860
BssECI CCNNGG 2 cut(s) 66, 392
BssMI GATC 3 cut(s) 194, 240, 781
BssSI CACGAG 3 cut(s) 17, 628, 1098
BssT1I CCWWGG 1 cut(s) 66
Bst2BI CACGAG 3 cut(s) 17, 628, 1098
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 232, 396, 577
Bst6I CTCTTC 2 cut(s) 762, 976
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 285, 666
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 3 cut(s) 50, 457, 493
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 3 cut(s) 197, 243, 784
BstMAI GTCTC 2 cut(s) 297, 667
BstMBI GATC 3 cut(s) 194, 240, 781
BstMWI GCNNNNNNNGC 8 cut(s) 46, 55, 221, 639, 709, 1079, 1229, 1279
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 1187
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 812
BstV1I GCAGC 2 cut(s) 262, 323
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 3 cut(s) 550, 1023, 1273
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 3 cut(s) 50, 457, 493
BtsIMutI CAGTG 2 cut(s) 573, 1074
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 326, 549, 1271
Csp6I GTAC 1 cut(s) 159
CviAII CATG 7 cut(s) 124, 296, 709, 881, 1019, 1184, 1214
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 285, 666
DpnI GATC 3 cut(s) 196, 242, 783
DpnII GATC 3 cut(s) 194, 240, 781
DraI TTTAAA 2 cut(s) 135, 741
Eam1104I CTCTTC 2 cut(s) 762, 976
EarI CTCTTC 2 cut(s) 762, 976
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 4 cut(s) 743, 917, 1096, 1098
EcoO109I RGGNCCY 1 cut(s) 1271
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 7 cut(s) 127, 299, 712, 884, 1022, 1187, 1217
FalI AAGNNNNNCTT 4 cut(s) 671, 703, 1239, 1271
FaqI GGGAC 2 cut(s) 655, 1121
FatI CATG 7 cut(s) 123, 295, 708, 880, 1018, 1183, 1213
Fnu4HI GCNGC 3 cut(s) 59, 251, 312
FokI GGATG 3 cut(s) 57, 464, 500
Fsp4HI GCNGC 3 cut(s) 59, 251, 312
FspBI CTAG 8 cut(s) 221, 263, 414, 936, 1013, 1028, 1220, 1224
FspI TGCGCA 1 cut(s) 102
GlaI GCGC 1 cut(s) 102
GluI GCNGC 3 cut(s) 59, 251, 312
HaeIII GGCC 3 cut(s) 550, 1023, 1273
HhaI GCGC 1 cut(s) 103
Hin1II CATG 7 cut(s) 127, 299, 712, 884, 1022, 1187, 1217
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 3 cut(s) 352, 685, 899
HinfI GANTC 5 cut(s) 13, 24, 257, 436, 1096
Hpy166II GTNNAC 1 cut(s) 1095
Hpy188I TCNGA 2 cut(s) 429, 762
Hpy188III TCNNGA 4 cut(s) 7, 17, 727, 1133
Hpy8I GTNNAC 1 cut(s) 1095
HpyAV CCTTC 6 cut(s) 166, 488, 723, 1034, 1221, 1241
HpyCH4III ACNGT 3 cut(s) 232, 396, 577
HpyCH4IV ACGT 1 cut(s) 1195
HpyCH4V TGCA 6 cut(s) 40, 215, 250, 880, 1139, 1260
HpyF10VI GCNNNNNNNGC 8 cut(s) 46, 55, 221, 639, 709, 1079, 1229, 1279
HpyF3I CTNAG 2 cut(s) 285, 666
HpySE526I ACGT 1 cut(s) 1195
Hsp92II CATG 7 cut(s) 127, 299, 712, 884, 1022, 1187, 1217
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 3 cut(s) 194, 240, 781
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 2 cut(s) 995, 1264
Lsp1109I GCAGC 2 cut(s) 262, 323
LweI GCATC 1 cut(s) 1126
MaeI CTAG 8 cut(s) 221, 263, 414, 936, 1013, 1028, 1220, 1224
MaeII ACGT 1 cut(s) 1195
MaeIII GTNAC 2 cut(s) 385, 587
MalI GATC 3 cut(s) 196, 242, 783
MboI GATC 3 cut(s) 194, 240, 781
MboII GAAGA 4 cut(s) 217, 749, 993, 1201
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 3 cut(s) 629, 757, 812
MluCI AATT 7 cut(s) 149, 181, 321, 457, 498, 821, 1293
MlyI GAGTC 4 cut(s) 18, 251, 445, 1090
Mph1103I ATGCAT 1 cut(s) 882
MseI TTAA 9 cut(s) 86, 134, 608, 740, 927, 974, 1200, 1241, 1292
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 441
MssI GTTTAAAC 1 cut(s) 741
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 8 cut(s) 46, 55, 221, 639, 709, 1079, 1229, 1279
NdeII GATC 3 cut(s) 194, 240, 781
NlaIII CATG 7 cut(s) 127, 299, 712, 884, 1022, 1187, 1217
NlaIV GGNNCC 1 cut(s) 1033
NsbI TGCGCA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 1 cut(s) 1187
OliI CACNNNNGTG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 60, 252, 313
PleI GAGTC 4 cut(s) 18, 251, 444, 1090
PmeI GTTTAAAC 1 cut(s) 741
PpsI GAGTC 4 cut(s) 18, 251, 444, 1090
PshBI ATTAAT 2 cut(s) 86, 927
Psp1406I AACGTT 1 cut(s) 1195
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 1033
PspPI GGNCC 3 cut(s) 326, 549, 1271
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 9 cut(s) 86, 134, 608, 740, 927, 974, 1200, 1241, 1292
SatI GCNGC 3 cut(s) 59, 251, 312
Sau3AI GATC 3 cut(s) 194, 240, 781
Sau96I GGNCC 3 cut(s) 326, 549, 1271
SchI GAGTC 4 cut(s) 18, 251, 445, 1090
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 3 cut(s) 629, 757, 812
SfaNI GCATC 1 cut(s) 1126
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
Sse9I AATT 7 cut(s) 149, 181, 321, 457, 498, 821, 1293
SsiI CCGC 1 cut(s) 58
SspI AATATT 1 cut(s) 84
SspMI CTAG 8 cut(s) 221, 263, 414, 936, 1013, 1028, 1220, 1224
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 3 cut(s) 232, 396, 577
TaiI ACGT 1 cut(s) 1198
TaqI TCGA 3 cut(s) 27, 53, 170
TasI AATT 7 cut(s) 149, 181, 321, 457, 498, 821, 1293
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 9 cut(s) 86, 134, 608, 740, 927, 974, 1200, 1241, 1292
Tru9I TTAA 9 cut(s) 86, 134, 608, 740, 927, 974, 1200, 1241, 1292
TscAI CASTG 2 cut(s) 580, 1081
TseI GCWGC 2 cut(s) 250, 311
TspDTI ATGAA 3 cut(s) 284, 331, 1230
TspRI CASTG 2 cut(s) 580, 1081
VpaK11BI GGWCC 1 cut(s) 326
VspI ATTAAT 2 cut(s) 86, 927
XapI RAATTY 3 cut(s) 149, 457, 498
XceI RCATGY 1 cut(s) 1187
XspI CTAG 8 cut(s) 221, 263, 414, 936, 1013, 1028, 1220, 1224
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.