Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 78 - 199 | 7.6e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 287 |
| AciI | CCGC | 1 cut(s) | 483 |
| AcsI | RAATTY | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 507 |
| AfaI | GTAC | 3 cut(s) | 192, 304, 709 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 215 |
| AgsI | TTSAA | 4 cut(s) | 124, 335, 401, 512 |
| AluBI | AGCT | 2 cut(s) | 7, 608 |
| AluI | AGCT | 2 cut(s) | 7, 608 |
| Ama87I | CYCGRG | 1 cut(s) | 603 |
| AoxI | GGCC | 1 cut(s) | 638 |
| ApeKI | GCWGC | 3 cut(s) | 4, 202, 575 |
| ApoI | RAATTY | 1 cut(s) | 106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 119 |
| AspA2I | CCTAGG | 1 cut(s) | 209 |
| AspS9I | GGNCC | 1 cut(s) | 638 |
| AsuHPI | GGTGA | 1 cut(s) | 241 |
| AvaI | CYCGRG | 1 cut(s) | 603 |
| AvrII | CCTAGG | 1 cut(s) | 209 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 182, 215 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 700, 732 |
| BbsI | GAAGAC | 1 cut(s) | 339 |
| BbvI | GCAGC | 3 cut(s) | 16, 214, 562 |
| BccI | CCATC | 2 cut(s) | 233, 629 |
| BfaI | CTAG | 3 cut(s) | 147, 210, 261 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 646 |
| BisI | GCNGC | 4 cut(s) | 5, 203, 483, 576 |
| BlnI | CCTAGG | 1 cut(s) | 209 |
| BlsI | GCNGC | 4 cut(s) | 6, 204, 484, 577 |
| BmcAI | AGTACT | 1 cut(s) | 709 |
| BmeT110I | CYCGRG | 1 cut(s) | 603 |
| BmgT120I | GGNCC | 1 cut(s) | 638 |
| BpiI | GAAGAC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 3 cut(s) | 209, 465, 766 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 483, 513 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 215 |
| Bse118I | RCCGGY | 1 cut(s) | 683 |
| Bse1I | ACTGG | 2 cut(s) | 38, 783 |
| BseDI | CCNNGG | 3 cut(s) | 209, 465, 766 |
| BseGI | GGATG | 2 cut(s) | 298, 640 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BseNI | ACTGG | 2 cut(s) | 38, 783 |
| BseXI | GCAGC | 3 cut(s) | 16, 214, 562 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| BsgI | GTGCAG | 1 cut(s) | 95 |
| BshFI | GGCC | 1 cut(s) | 640 |
| BsiHKCI | CYCGRG | 1 cut(s) | 603 |
| BsiSI | CCGG | 1 cut(s) | 684 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BsnI | GGCC | 1 cut(s) | 640 |
| BsoBI | CYCGRG | 1 cut(s) | 603 |
| Bsp19I | CCATGG | 1 cut(s) | 766 |
| BspACI | CCGC | 1 cut(s) | 483 |
| BspANI | GGCC | 1 cut(s) | 640 |
| BsrFI | RCCGGY | 1 cut(s) | 683 |
| BsrI | ACTGG | 2 cut(s) | 38, 783 |
| BssAI | RCCGGY | 1 cut(s) | 683 |
| BssECI | CCNNGG | 3 cut(s) | 209, 465, 766 |
| BssT1I | CCWWGG | 3 cut(s) | 209, 465, 766 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 236 |
| Bst6I | CTCTTC | 1 cut(s) | 110 |
| BstDSI | CCRYGG | 1 cut(s) | 766 |
| BstF5I | GGATG | 2 cut(s) | 298, 640 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 581, 646 |
| BstNSI | RCATGY | 1 cut(s) | 371 |
| BstV1I | GCAGC | 3 cut(s) | 16, 214, 562 |
| BstV2I | GAAGAC | 1 cut(s) | 339 |
| BsuRI | GGCC | 1 cut(s) | 640 |
| BtgI | CCRYGG | 1 cut(s) | 766 |
| BtsCI | GGATG | 2 cut(s) | 298, 640 |
| Cfr10I | RCCGGY | 1 cut(s) | 683 |
| Cfr13I | GGNCC | 1 cut(s) | 638 |
| Csp6I | GTAC | 3 cut(s) | 191, 303, 708 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 360, 395 |
| CviAII | CATG | 8 cut(s) | 38, 299, 368, 551, 581, 596, 652, 767 |
| CviQI | GTAC | 3 cut(s) | 191, 303, 708 |
| Eam1104I | CTCTTC | 1 cut(s) | 110 |
| EarI | CTCTTC | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 3 cut(s) | 209, 465, 766 |
| Eco57I | CTGAAG | 1 cut(s) | 507 |
| Eco88I | CYCGRG | 1 cut(s) | 603 |
| EcoT14I | CCWWGG | 3 cut(s) | 209, 465, 766 |
| ErhI | CCWWGG | 3 cut(s) | 209, 465, 766 |
| FaeI | CATG | 8 cut(s) | 41, 302, 371, 554, 584, 599, 655, 770 |
| FatI | CATG | 8 cut(s) | 37, 298, 367, 550, 580, 595, 651, 766 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 203, 483, 576 |
| FokI | GGATG | 2 cut(s) | 305, 647 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 203, 483, 576 |
| FspBI | CTAG | 3 cut(s) | 147, 210, 261 |
| GluI | GCNGC | 4 cut(s) | 5, 203, 483, 576 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 640 |
| HapII | CCGG | 1 cut(s) | 684 |
| Hin1II | CATG | 8 cut(s) | 41, 302, 371, 554, 584, 599, 655, 770 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HpaII | CCGG | 1 cut(s) | 684 |
| HphI | GGTGA | 1 cut(s) | 241 |
| Hpy166II | GTNNAC | 1 cut(s) | 232 |
| Hpy188I | TCNGA | 2 cut(s) | 82, 433 |
| Hpy188III | TCNNGA | 1 cut(s) | 560 |
| Hpy8I | GTNNAC | 1 cut(s) | 232 |
| Hpy99I | CGWCG | 1 cut(s) | 561 |
| HpyAV | CCTTC | 2 cut(s) | 180, 482 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 236 |
| HpyCH4IV | ACGT | 2 cut(s) | 305, 417 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 76, 281, 371, 584 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 581, 646 |
| HpySE526I | ACGT | 2 cut(s) | 305, 417 |
| Hsp92II | CATG | 8 cut(s) | 41, 302, 371, 554, 584, 599, 655, 770 |
| LpnPI | CCDG | 5 cut(s) | 19, 167, 303, 654, 697 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 214, 562 |
| MaeI | CTAG | 3 cut(s) | 147, 210, 261 |
| MaeII | ACGT | 2 cut(s) | 305, 417 |
| MaeIII | GTNAC | 1 cut(s) | 654 |
| MboII | GAAGA | 5 cut(s) | 127, 339, 705, 708, 717 |
| MfeI | CAATTG | 1 cut(s) | 341 |
| MluCI | AATT | 9 cut(s) | 49, 106, 222, 282, 328, 341, 362, 372, 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 119 |
| MseI | TTAA | 6 cut(s) | 29, 225, 249, 375, 410, 787 |
| MslI | CAYNNNNRTG | 1 cut(s) | 765 |
| MspA1I | CMGCKG | 1 cut(s) | 485 |
| MspI | CCGG | 1 cut(s) | 684 |
| MunI | CAATTG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 581, 646 |
| NcoI | CCATGG | 1 cut(s) | 766 |
| NlaIII | CATG | 8 cut(s) | 41, 302, 371, 554, 584, 599, 655, 770 |
| NmuCI | GTSAC | 1 cut(s) | 654 |
| NspI | RCATGY | 1 cut(s) | 371 |
| PdmI | GAANNNNTTC | 1 cut(s) | 119 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PkrI | GCNGC | 4 cut(s) | 6, 204, 484, 577 |
| PsiI | TTATAA | 1 cut(s) | 287 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspPI | GGNCC | 1 cut(s) | 638 |
| RsaI | GTAC | 3 cut(s) | 192, 304, 709 |
| RsaNI | GTAC | 3 cut(s) | 191, 303, 708 |
| RseI | CAYNNNNRTG | 1 cut(s) | 765 |
| SaqAI | TTAA | 6 cut(s) | 29, 225, 249, 375, 410, 787 |
| SatI | GCNGC | 4 cut(s) | 5, 203, 483, 576 |
| Sau96I | GGNCC | 1 cut(s) | 638 |
| ScaI | AGTACT | 1 cut(s) | 709 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 765 |
| Sse9I | AATT | 9 cut(s) | 49, 106, 222, 282, 328, 341, 362, 372, 618 |
| SsiI | CCGC | 1 cut(s) | 483 |
| SspMI | CTAG | 3 cut(s) | 147, 210, 261 |
| StyI | CCWWGG | 3 cut(s) | 209, 465, 766 |
| TaaI | ACNGT | 2 cut(s) | 70, 236 |
| TaiI | ACGT | 2 cut(s) | 308, 420 |
| TasI | AATT | 9 cut(s) | 49, 106, 222, 282, 328, 341, 362, 372, 618 |
| TatI | WGTACW | 1 cut(s) | 707 |
| TauI | GCSGC | 1 cut(s) | 485 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| Tru1I | TTAA | 6 cut(s) | 29, 225, 249, 375, 410, 787 |
| Tru9I | TTAA | 6 cut(s) | 29, 225, 249, 375, 410, 787 |
| TseFI | GTSAC | 1 cut(s) | 654 |
| TseI | GCWGC | 3 cut(s) | 4, 202, 575 |
| Tsp45I | GTSAC | 1 cut(s) | 654 |
| TspDTI | ATGAA | 1 cut(s) | 269 |
| TspGWI | ACGGA | 1 cut(s) | 208 |
| XapI | RAATTY | 1 cut(s) | 106 |
| XceI | RCATGY | 1 cut(s) | 371 |
| XmaJI | CCTAGG | 1 cut(s) | 209 |
| XmnI | GAANNNNTTC | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 147, 210, 261 |
| ZrmI | AGTACT | 1 cut(s) | 709 |