Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 69 - 142 | 8.8e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 140, 476, 479, 482 |
| AclWI | GGATC | 1 cut(s) | 312 |
| AcsI | RAATTY | 1 cut(s) | 411 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AdeI | CACNNNGTG | 1 cut(s) | 515 |
| AfaI | GTAC | 1 cut(s) | 144 |
| AgsI | TTSAA | 1 cut(s) | 443 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 339 |
| AjnI | CCWGG | 1 cut(s) | 511 |
| AluBI | AGCT | 2 cut(s) | 487, 552 |
| AluI | AGCT | 2 cut(s) | 487, 552 |
| Alw26I | GTCTC | 2 cut(s) | 38, 326 |
| AlwI | GGATC | 1 cut(s) | 312 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 518 |
| AoxI | GGCC | 1 cut(s) | 164 |
| ApeKI | GCWGC | 3 cut(s) | 218, 484, 518 |
| ApoI | RAATTY | 1 cut(s) | 411 |
| AseI | ATTAAT | 1 cut(s) | 363 |
| AspLEI | GCGC | 2 cut(s) | 329, 498 |
| AsuC2I | CCSGG | 1 cut(s) | 254 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 239, 268, 501 |
| BbvI | GCAGC | 3 cut(s) | 205, 496, 505 |
| BccI | CCATC | 5 cut(s) | 35, 232, 265, 277, 306 |
| BceAI | ACGGC | 2 cut(s) | 179, 509 |
| BciT130I | CCWGG | 1 cut(s) | 513 |
| BcnI | CCSGG | 1 cut(s) | 254 |
| BcoDI | GTCTC | 2 cut(s) | 38, 326 |
| BfaI | CTAG | 2 cut(s) | 66, 170 |
| BfoI | RGCGCY | 2 cut(s) | 330, 499 |
| BisI | GCNGC | 5 cut(s) | 219, 479, 482, 485, 519 |
| BlsI | GCNGC | 5 cut(s) | 220, 480, 483, 486, 520 |
| Bme1390I | CCNGG | 2 cut(s) | 254, 513 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 339 |
| BmrFI | CCNGG | 2 cut(s) | 254, 513 |
| BmsI | GCATC | 2 cut(s) | 52, 166 |
| BpuMI | CCSGG | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 222 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 35, 65 |
| BseBI | CCWGG | 1 cut(s) | 513 |
| BseDI | CCNNGG | 2 cut(s) | 161, 222 |
| BseGI | GGATG | 4 cut(s) | 67, 91, 157, 317 |
| BseMII | CTCAG | 3 cut(s) | 83, 363, 515 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseXI | GCAGC | 3 cut(s) | 205, 496, 505 |
| BshFI | GGCC | 1 cut(s) | 166 |
| BsiSI | CCGG | 1 cut(s) | 254 |
| BslFI | GGGAC | 1 cut(s) | 210 |
| BsmAI | GTCTC | 2 cut(s) | 38, 326 |
| BsmFI | GGGAC | 1 cut(s) | 210 |
| BsnI | GGCC | 1 cut(s) | 166 |
| Bsp143I | GATC | 1 cut(s) | 304 |
| Bsp19I | CCATGG | 1 cut(s) | 222 |
| BspACI | CCGC | 4 cut(s) | 140, 476, 479, 482 |
| BspANI | GGCC | 1 cut(s) | 166 |
| BspCNI | CTCAG | 3 cut(s) | 84, 364, 516 |
| BspPI | GGATC | 1 cut(s) | 312 |
| BssECI | CCNNGG | 2 cut(s) | 161, 222 |
| BssMI | GATC | 1 cut(s) | 304 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst2UI | CCWGG | 1 cut(s) | 513 |
| Bst4CI | ACNGT | 4 cut(s) | 49, 58, 82, 201 |
| BstDEI | CTNAG | 3 cut(s) | 92, 372, 524 |
| BstDSI | CCRYGG | 2 cut(s) | 161, 222 |
| BstEII | GGTNACC | 1 cut(s) | 507 |
| BstF5I | GGATG | 4 cut(s) | 67, 91, 157, 317 |
| BstH2I | RGCGCY | 2 cut(s) | 330, 499 |
| BstHHI | GCGC | 2 cut(s) | 329, 498 |
| BstKTI | GATC | 1 cut(s) | 307 |
| BstMAI | GTCTC | 2 cut(s) | 38, 326 |
| BstMBI | GATC | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 163, 484, 493 |
| BstNI | CCWGG | 1 cut(s) | 513 |
| BstPI | GGTNACC | 1 cut(s) | 507 |
| BstSCI | CCNGG | 2 cut(s) | 252, 511 |
| BstV1I | GCAGC | 3 cut(s) | 205, 496, 505 |
| BsuRI | GGCC | 1 cut(s) | 166 |
| BtgI | CCRYGG | 2 cut(s) | 161, 222 |
| BtsCI | GGATG | 4 cut(s) | 67, 91, 157, 317 |
| BtsIMutI | CAGTG | 4 cut(s) | 63, 87, 196, 206 |
| CaiI | CAGNNNCTG | 1 cut(s) | 518 |
| CfoI | GCGC | 2 cut(s) | 329, 498 |
| CseI | GACGC | 1 cut(s) | 435 |
| CsiI | ACCWGGT | 1 cut(s) | 511 |
| Csp6I | GTAC | 1 cut(s) | 143 |
| CviAII | CATG | 2 cut(s) | 223, 301 |
| CviJI | RGCY | 6 cut(s) | 166, 218, 247, 487, 539, 552 |
| CviKI_1 | RGCY | 6 cut(s) | 166, 218, 247, 487, 539, 552 |
| CviQI | GTAC | 1 cut(s) | 143 |
| DdeI | CTNAG | 3 cut(s) | 92, 372, 524 |
| DpnI | GATC | 1 cut(s) | 306 |
| DpnII | GATC | 1 cut(s) | 304 |
| DraIII | CACNNNGTG | 1 cut(s) | 515 |
| DriI | GACNNNNNGTC | 1 cut(s) | 339 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco91I | GGTNACC | 1 cut(s) | 507 |
| EcoO65I | GGTNACC | 1 cut(s) | 507 |
| EcoRI | GAATTC | 1 cut(s) | 411 |
| EcoRII | CCWGG | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 2 cut(s) | 226, 304 |
| FaiI | YATR | 8 cut(s) | 115, 179, 181, 183, 224, 302, 434, 464 |
| FaqI | GGGAC | 1 cut(s) | 210 |
| FatI | CATG | 2 cut(s) | 222, 300 |
| Fnu4HI | GCNGC | 5 cut(s) | 219, 479, 482, 485, 519 |
| FokI | GGATG | 4 cut(s) | 74, 98, 144, 324 |
| Fsp4HI | GCNGC | 5 cut(s) | 219, 479, 482, 485, 519 |
| FspBI | CTAG | 2 cut(s) | 66, 170 |
| GlaI | GCGC | 2 cut(s) | 328, 497 |
| GluI | GCNGC | 5 cut(s) | 219, 479, 482, 485, 519 |
| HaeII | RGCGCY | 2 cut(s) | 330, 499 |
| HaeIII | GGCC | 1 cut(s) | 166 |
| HapII | CCGG | 1 cut(s) | 254 |
| HgaI | GACGC | 1 cut(s) | 435 |
| HhaI | GCGC | 2 cut(s) | 329, 498 |
| Hin1II | CATG | 2 cut(s) | 226, 304 |
| Hin6I | GCGC | 2 cut(s) | 327, 496 |
| HinP1I | GCGC | 2 cut(s) | 327, 496 |
| HincII | GTYRAC | 2 cut(s) | 54, 78 |
| HindII | GTYRAC | 2 cut(s) | 54, 78 |
| HinfI | GANTC | 1 cut(s) | 528 |
| HpaII | CCGG | 1 cut(s) | 254 |
| HphI | GGTGA | 4 cut(s) | 16, 239, 268, 501 |
| Hpy166II | GTNNAC | 2 cut(s) | 54, 78 |
| Hpy188I | TCNGA | 1 cut(s) | 548 |
| Hpy188III | TCNNGA | 3 cut(s) | 152, 170, 344 |
| Hpy8I | GTNNAC | 2 cut(s) | 54, 78 |
| Hpy99I | CGWCG | 2 cut(s) | 451, 495 |
| HpyAV | CCTTC | 3 cut(s) | 64, 121, 386 |
| HpyCH4III | ACNGT | 4 cut(s) | 49, 58, 82, 201 |
| HpyCH4V | TGCA | 1 cut(s) | 185 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 163, 484, 493 |
| HpyF3I | CTNAG | 3 cut(s) | 92, 372, 524 |
| Hsp92II | CATG | 2 cut(s) | 226, 304 |
| HspAI | GCGC | 2 cut(s) | 327, 496 |
| Kzo9I | GATC | 1 cut(s) | 304 |
| LmnI | GCTCC | 1 cut(s) | 297 |
| LpnPI | CCDG | 7 cut(s) | 86, 267, 329, 498, 525, 536, 546 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 496, 505 |
| LweI | GCATC | 2 cut(s) | 52, 166 |
| MabI | ACCWGGT | 1 cut(s) | 511 |
| MaeI | CTAG | 2 cut(s) | 66, 170 |
| MaeIII | GTNAC | 2 cut(s) | 256, 507 |
| MalI | GATC | 1 cut(s) | 306 |
| MboI | GATC | 1 cut(s) | 304 |
| MluCI | AATT | 4 cut(s) | 121, 146, 337, 411 |
| MnlI | CCTC | 5 cut(s) | 34, 87, 166, 177, 187 |
| MseI | TTAA | 4 cut(s) | 363, 422, 500, 562 |
| MspI | CCGG | 1 cut(s) | 254 |
| MspR9I | CCNGG | 2 cut(s) | 254, 513 |
| MvaI | CCWGG | 1 cut(s) | 513 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 163, 484, 493 |
| NciI | CCSGG | 1 cut(s) | 254 |
| NcoI | CCATGG | 1 cut(s) | 222 |
| NdeII | GATC | 1 cut(s) | 304 |
| NlaIII | CATG | 2 cut(s) | 226, 304 |
| NmeAIII | GCCGAG | 1 cut(s) | 355 |
| NmuCI | GTSAC | 2 cut(s) | 256, 507 |
| PfeI | GAWTC | 1 cut(s) | 528 |
| PkrI | GCNGC | 5 cut(s) | 220, 480, 483, 486, 520 |
| PshBI | ATTAAT | 1 cut(s) | 363 |
| Psp6I | CCWGG | 1 cut(s) | 511 |
| PspEI | GGTNACC | 1 cut(s) | 507 |
| PspGI | CCWGG | 1 cut(s) | 511 |
| PstNI | CAGNNNCTG | 1 cut(s) | 518 |
| RsaI | GTAC | 1 cut(s) | 144 |
| RsaNI | GTAC | 1 cut(s) | 143 |
| SaqAI | TTAA | 4 cut(s) | 363, 422, 500, 562 |
| SatI | GCNGC | 5 cut(s) | 219, 479, 482, 485, 519 |
| Sau3AI | GATC | 1 cut(s) | 304 |
| ScrFI | CCNGG | 2 cut(s) | 254, 513 |
| SetI | ASST | 7 cut(s) | 75, 98, 177, 397, 489, 517, 554 |
| SexAI | ACCWGGT | 1 cut(s) | 511 |
| SfaNI | GCATC | 2 cut(s) | 52, 166 |
| Sse9I | AATT | 4 cut(s) | 121, 146, 337, 411 |
| SsiI | CCGC | 4 cut(s) | 140, 476, 479, 482 |
| SspI | AATATT | 1 cut(s) | 279 |
| SspMI | CTAG | 2 cut(s) | 66, 170 |
| StyD4I | CCNGG | 2 cut(s) | 252, 511 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 4 cut(s) | 49, 58, 82, 201 |
| TasI | AATT | 4 cut(s) | 121, 146, 337, 411 |
| TauI | GCSGC | 2 cut(s) | 481, 484 |
| TfiI | GAWTC | 1 cut(s) | 528 |
| Tru1I | TTAA | 4 cut(s) | 363, 422, 500, 562 |
| Tru9I | TTAA | 4 cut(s) | 363, 422, 500, 562 |
| TscAI | CASTG | 4 cut(s) | 63, 87, 196, 206 |
| TseFI | GTSAC | 2 cut(s) | 256, 507 |
| TseI | GCWGC | 3 cut(s) | 218, 484, 518 |
| Tsp45I | GTSAC | 2 cut(s) | 256, 507 |
| TspDTI | ATGAA | 2 cut(s) | 102, 404 |
| TspRI | CASTG | 4 cut(s) | 63, 87, 196, 206 |
| VspI | ATTAAT | 1 cut(s) | 363 |
| XapI | RAATTY | 1 cut(s) | 411 |
| XbaI | TCTAGA | 1 cut(s) | 169 |
| XspI | CTAG | 2 cut(s) | 66, 170 |