Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 352, 451 |
| AccII | CGCG | 1 cut(s) | 599 |
| AciI | CCGC | 4 cut(s) | 222, 386, 473, 597 |
| AclI | AACGTT | 1 cut(s) | 55 |
| AclWI | GGATC | 4 cut(s) | 415, 428, 554, 595 |
| AcoI | YGGCCR | 2 cut(s) | 371, 501 |
| AfaI | GTAC | 4 cut(s) | 63, 184, 226, 317 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 25, 26, 442, 513, 563, 580 |
| AgsI | TTSAA | 2 cut(s) | 92, 245 |
| AluBI | AGCT | 6 cut(s) | 8, 140, 269, 281, 512, 536 |
| AluI | AGCT | 6 cut(s) | 8, 140, 269, 281, 512, 536 |
| Alw26I | GTCTC | 1 cut(s) | 589 |
| AlwI | GGATC | 4 cut(s) | 415, 428, 554, 595 |
| AoxI | GGCC | 2 cut(s) | 371, 501 |
| ApeKI | GCWGC | 1 cut(s) | 527 |
| AsuHPI | GGTGA | 1 cut(s) | 8 |
| AsuII | TTCGAA | 1 cut(s) | 607 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 174, 207 |
| BalI | TGGCCA | 2 cut(s) | 373, 503 |
| BamHI | GGATCC | 1 cut(s) | 420 |
| BanI | GGYRCC | 2 cut(s) | 352, 451 |
| BbvI | GCAGC | 1 cut(s) | 514 |
| BccI | CCATC | 2 cut(s) | 329, 502 |
| BcoDI | GTCTC | 1 cut(s) | 589 |
| BfaI | CTAG | 3 cut(s) | 146, 249, 357 |
| BisI | GCNGC | 2 cut(s) | 386, 528 |
| BlsI | GCNGC | 2 cut(s) | 387, 529 |
| BmiI | GGNNCC | 3 cut(s) | 354, 422, 453 |
| Bpu14I | TTCGAA | 1 cut(s) | 607 |
| BsaBI | GATNNNNATC | 1 cut(s) | 293 |
| BsaI | GGTCTC | 1 cut(s) | 589 |
| BsaJI | CCNNGG | 1 cut(s) | 562 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 25, 26, 442, 513, 563, 580 |
| Bse8I | GATNNNNATC | 1 cut(s) | 293 |
| BseDI | CCNNGG | 1 cut(s) | 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 293 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 25, 26, 442, 513, 563, 580 |
| BseMII | CTCAG | 3 cut(s) | 165, 296, 600 |
| BseXI | GCAGC | 1 cut(s) | 514 |
| BseYI | CCCAGC | 2 cut(s) | 512, 574 |
| BsgI | GTGCAG | 1 cut(s) | 385 |
| Bsh1236I | CGCG | 1 cut(s) | 599 |
| Bsh1285I | CGRYCG | 1 cut(s) | 645 |
| BshFI | GGCC | 2 cut(s) | 373, 503 |
| BshNI | GGYRCC | 2 cut(s) | 352, 451 |
| BsiEI | CGRYCG | 1 cut(s) | 645 |
| BsiSI | CCGG | 1 cut(s) | 544 |
| BslFI | GGGAC | 1 cut(s) | 557 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 25, 26, 442, 513, 563, 580 |
| BsmAI | GTCTC | 1 cut(s) | 589 |
| BsmFI | GGGAC | 1 cut(s) | 557 |
| BsmI | GAATGC | 1 cut(s) | 260 |
| BsnI | GGCC | 2 cut(s) | 373, 503 |
| Bso31I | GGTCTC | 1 cut(s) | 589 |
| Bsp119I | TTCGAA | 1 cut(s) | 607 |
| Bsp143I | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| BspACI | CCGC | 4 cut(s) | 222, 386, 473, 597 |
| BspANI | GGCC | 2 cut(s) | 373, 503 |
| BspCNI | CTCAG | 3 cut(s) | 166, 295, 599 |
| BspFNI | CGCG | 1 cut(s) | 599 |
| BspLI | GGNNCC | 3 cut(s) | 354, 422, 453 |
| BspPI | GGATC | 4 cut(s) | 415, 428, 554, 595 |
| BspT104I | TTCGAA | 1 cut(s) | 607 |
| BspT107I | GGYRCC | 2 cut(s) | 352, 451 |
| BspTNI | GGTCTC | 1 cut(s) | 589 |
| BssECI | CCNNGG | 1 cut(s) | 562 |
| BssMI | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| Bst4CI | ACNGT | 1 cut(s) | 128 |
| BstBI | TTCGAA | 1 cut(s) | 607 |
| BstC8I | GCNNGC | 3 cut(s) | 142, 216, 220 |
| BstDEI | CTNAG | 3 cut(s) | 174, 282, 586 |
| BstDSI | CCRYGG | 1 cut(s) | 562 |
| BstFNI | CGCG | 1 cut(s) | 599 |
| BstKTI | GATC | 6 cut(s) | 163, 423, 549, 603, 628, 645 |
| BstMAI | GTCTC | 1 cut(s) | 589 |
| BstMBI | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| BstMCI | CGRYCG | 1 cut(s) | 645 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 509, 533 |
| BstNSI | RCATGY | 1 cut(s) | 222 |
| BstUI | CGCG | 1 cut(s) | 599 |
| BstV1I | GCAGC | 1 cut(s) | 514 |
| BstX2I | RGATCY | 2 cut(s) | 420, 546 |
| BstYI | RGATCY | 2 cut(s) | 420, 546 |
| BsuRI | GGCC | 2 cut(s) | 373, 503 |
| BtgI | CCRYGG | 1 cut(s) | 562 |
| BtsI | GCAGTG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 2 cut(s) | 585, 594 |
| Cac8I | GCNNGC | 3 cut(s) | 142, 216, 220 |
| Csp6I | GTAC | 4 cut(s) | 62, 183, 225, 316 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 480, 515 |
| CviAII | CATG | 3 cut(s) | 211, 219, 272 |
| CviQI | GTAC | 4 cut(s) | 62, 183, 225, 316 |
| DdeI | CTNAG | 3 cut(s) | 174, 282, 586 |
| DpnI | GATC | 6 cut(s) | 162, 422, 548, 602, 627, 644 |
| DpnII | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| EaeI | YGGCCR | 2 cut(s) | 371, 501 |
| Eco31I | GGTCTC | 1 cut(s) | 589 |
| FaeI | CATG | 3 cut(s) | 214, 222, 275 |
| FaiI | YATR | 7 cut(s) | 156, 212, 220, 273, 303, 334, 509 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 430, 462 |
| FaqI | GGGAC | 1 cut(s) | 557 |
| FatI | CATG | 3 cut(s) | 210, 218, 271 |
| FauI | CCCGC | 1 cut(s) | 604 |
| Fnu4HI | GCNGC | 2 cut(s) | 386, 528 |
| Fsp4HI | GCNGC | 2 cut(s) | 386, 528 |
| FspBI | CTAG | 3 cut(s) | 146, 249, 357 |
| GluI | GCNGC | 2 cut(s) | 386, 528 |
| GsaI | CCCAGC | 2 cut(s) | 516, 578 |
| HaeIII | GGCC | 2 cut(s) | 373, 503 |
| HapII | CCGG | 1 cut(s) | 544 |
| Hin1II | CATG | 3 cut(s) | 214, 222, 275 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 4 cut(s) | 205, 360, 467, 482 |
| HpaII | CCGG | 1 cut(s) | 544 |
| HphI | GGTGA | 1 cut(s) | 8 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 487 |
| Hpy188III | TCNNGA | 5 cut(s) | 89, 110, 202, 424, 649 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| HpyAV | CCTTC | 4 cut(s) | 390, 511, 562, 614 |
| HpyCH4III | ACNGT | 1 cut(s) | 128 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 428, 570 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 214, 258, 402, 592 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 509, 533 |
| HpyF3I | CTNAG | 3 cut(s) | 174, 282, 586 |
| HpySE526I | ACGT | 3 cut(s) | 55, 428, 570 |
| Hsp92II | CATG | 3 cut(s) | 214, 222, 275 |
| Kzo9I | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| LmnI | GCTCC | 1 cut(s) | 5 |
| LpnPI | CCDG | 5 cut(s) | 403, 437, 498, 557, 588 |
| Lsp1109I | GCAGC | 1 cut(s) | 514 |
| MaeI | CTAG | 3 cut(s) | 146, 249, 357 |
| MaeII | ACGT | 3 cut(s) | 55, 428, 570 |
| MaeIII | GTNAC | 2 cut(s) | 29, 46 |
| MalI | GATC | 6 cut(s) | 162, 422, 548, 602, 627, 644 |
| MboI | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MflI | RGATCY | 2 cut(s) | 420, 546 |
| MlsI | TGGCCA | 2 cut(s) | 373, 503 |
| MluCI | AATT | 2 cut(s) | 21, 151 |
| MluNI | TGGCCA | 2 cut(s) | 373, 503 |
| MlyI | GAGTC | 4 cut(s) | 199, 354, 461, 476 |
| MnlI | CCTC | 4 cut(s) | 117, 169, 607, 642 |
| Mox20I | TGGCCA | 2 cut(s) | 373, 503 |
| MscI | TGGCCA | 2 cut(s) | 373, 503 |
| MslI | CAYNNNNRTG | 1 cut(s) | 331 |
| Msp20I | TGGCCA | 2 cut(s) | 373, 503 |
| MspI | CCGG | 1 cut(s) | 544 |
| Mva1269I | GAATGC | 1 cut(s) | 260 |
| MvnI | CGCG | 1 cut(s) | 599 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 509, 533 |
| NdeII | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| NlaIII | CATG | 3 cut(s) | 214, 222, 275 |
| NlaIV | GGNNCC | 3 cut(s) | 354, 422, 453 |
| NmuCI | GTSAC | 1 cut(s) | 29 |
| NspI | RCATGY | 1 cut(s) | 222 |
| NspV | TTCGAA | 1 cut(s) | 607 |
| PaeI | GCATGC | 1 cut(s) | 222 |
| PctI | GAATGC | 1 cut(s) | 260 |
| PkrI | GCNGC | 2 cut(s) | 387, 529 |
| Ple19I | CGATCG | 1 cut(s) | 645 |
| PleI | GAGTC | 4 cut(s) | 199, 354, 461, 476 |
| PpsI | GAGTC | 4 cut(s) | 199, 354, 461, 476 |
| Psp1406I | AACGTT | 1 cut(s) | 55 |
| PspFI | CCCAGC | 2 cut(s) | 512, 574 |
| PspN4I | GGNNCC | 3 cut(s) | 354, 422, 453 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 45, 77 |
| PsuI | RGATCY | 2 cut(s) | 420, 546 |
| PvuI | CGATCG | 1 cut(s) | 645 |
| RsaI | GTAC | 4 cut(s) | 63, 184, 226, 317 |
| RsaNI | GTAC | 4 cut(s) | 62, 183, 225, 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 331 |
| SatI | GCNGC | 2 cut(s) | 386, 528 |
| Sau3AI | GATC | 6 cut(s) | 160, 420, 546, 600, 625, 642 |
| SchI | GAGTC | 4 cut(s) | 199, 354, 461, 476 |
| SfuI | TTCGAA | 1 cut(s) | 607 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 331 |
| SphI | GCATGC | 1 cut(s) | 222 |
| Sse9I | AATT | 2 cut(s) | 21, 151 |
| SsiI | CCGC | 4 cut(s) | 222, 386, 473, 597 |
| SspMI | CTAG | 3 cut(s) | 146, 249, 357 |
| TaaI | ACNGT | 1 cut(s) | 128 |
| TaiI | ACGT | 3 cut(s) | 58, 431, 573 |
| TaqI | TCGA | 1 cut(s) | 607 |
| TasI | AATT | 2 cut(s) | 21, 151 |
| TauI | GCSGC | 1 cut(s) | 388 |
| TscAI | CASTG | 2 cut(s) | 585, 594 |
| TseFI | GTSAC | 1 cut(s) | 29 |
| TseI | GCWGC | 1 cut(s) | 527 |
| Tsp45I | GTSAC | 1 cut(s) | 29 |
| TspRI | CASTG | 2 cut(s) | 585, 594 |
| XceI | RCATGY | 1 cut(s) | 222 |
| XspI | CTAG | 3 cut(s) | 146, 249, 357 |