Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 16 - 111 | 4.5e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 59 |
| AccII | CGCG | 1 cut(s) | 327 |
| AciI | CCGC | 2 cut(s) | 59, 95 |
| AfaI | GTAC | 2 cut(s) | 88, 300 |
| AgsI | TTSAA | 1 cut(s) | 334 |
| AoxI | GGCC | 1 cut(s) | 265 |
| AseI | ATTAAT | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 1 cut(s) | 220 |
| BccI | CCATC | 2 cut(s) | 47, 65 |
| BfaI | CTAG | 3 cut(s) | 66, 114, 302 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| BmcAI | AGTACT | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 237 |
| Bse1I | ACTGG | 1 cut(s) | 94 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseDI | CCNNGG | 1 cut(s) | 237 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseNI | ACTGG | 1 cut(s) | 94 |
| BsgI | GTGCAG | 1 cut(s) | 150 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 267 |
| BsnI | GGCC | 1 cut(s) | 267 |
| Bsp143I | GATC | 2 cut(s) | 136, 214 |
| Bsp19I | CCATGG | 1 cut(s) | 237 |
| BspACI | CCGC | 2 cut(s) | 59, 95 |
| BspANI | GGCC | 1 cut(s) | 267 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BsrBI | CCGCTC | 1 cut(s) | 59 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrI | ACTGG | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 237 |
| BssMI | GATC | 2 cut(s) | 136, 214 |
| BssT1I | CCWWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstKTI | GATC | 2 cut(s) | 139, 217 |
| BstMBI | GATC | 2 cut(s) | 136, 214 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BsuRI | GGCC | 1 cut(s) | 267 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| CseI | GACGC | 1 cut(s) | 266 |
| Csp6I | GTAC | 2 cut(s) | 87, 299 |
| CviAII | CATG | 2 cut(s) | 110, 238 |
| CviJI | RGCY | 3 cut(s) | 65, 98, 267 |
| CviKI_1 | RGCY | 3 cut(s) | 65, 98, 267 |
| CviQI | GTAC | 2 cut(s) | 87, 299 |
| DpnI | GATC | 2 cut(s) | 138, 216 |
| DpnII | GATC | 2 cut(s) | 136, 214 |
| Eco130I | CCWWGG | 1 cut(s) | 237 |
| Eco147I | AGGCCT | 1 cut(s) | 267 |
| EcoT14I | CCWWGG | 1 cut(s) | 237 |
| ErhI | CCWWGG | 1 cut(s) | 237 |
| FaeI | CATG | 2 cut(s) | 113, 241 |
| FaiI | YATR | 6 cut(s) | 111, 183, 239, 254, 279, 308 |
| FatI | CATG | 2 cut(s) | 109, 237 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| FokI | GGATG | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| FspBI | CTAG | 3 cut(s) | 66, 114, 302 |
| GluI | GCNGC | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 267 |
| HgaI | GACGC | 1 cut(s) | 266 |
| Hin1II | CATG | 2 cut(s) | 113, 241 |
| HinfI | GANTC | 2 cut(s) | 5, 242 |
| HphI | GGTGA | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 3 cut(s) | 39, 104, 175 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4V | TGCA | 4 cut(s) | 131, 185, 226, 296 |
| Hsp92II | CATG | 2 cut(s) | 113, 241 |
| Kzo9I | GATC | 2 cut(s) | 136, 214 |
| LmnI | GCTCC | 2 cut(s) | 56, 316 |
| LpnPI | CCDG | 2 cut(s) | 39, 75 |
| MaeI | CTAG | 3 cut(s) | 66, 114, 302 |
| MaeIII | GTNAC | 1 cut(s) | 271 |
| MalI | GATC | 2 cut(s) | 138, 216 |
| MbiI | CCGCTC | 1 cut(s) | 59 |
| MboI | GATC | 2 cut(s) | 136, 214 |
| MluCI | AATT | 5 cut(s) | 41, 46, 119, 123, 329 |
| MnlI | CCTC | 1 cut(s) | 73 |
| MseI | TTAA | 4 cut(s) | 44, 122, 158, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 311 |
| MvnI | CGCG | 1 cut(s) | 327 |
| NcoI | CCATGG | 1 cut(s) | 237 |
| NdeII | GATC | 2 cut(s) | 136, 214 |
| NlaIII | CATG | 2 cut(s) | 113, 241 |
| PceI | AGGCCT | 1 cut(s) | 267 |
| PfeI | GAWTC | 2 cut(s) | 5, 242 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| PshBI | ATTAAT | 1 cut(s) | 122 |
| RsaI | GTAC | 2 cut(s) | 88, 300 |
| RsaNI | GTAC | 2 cut(s) | 87, 299 |
| RseI | CAYNNNNRTG | 1 cut(s) | 311 |
| SaqAI | TTAA | 4 cut(s) | 44, 122, 158, 167 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 2 cut(s) | 136, 214 |
| ScaI | AGTACT | 1 cut(s) | 300 |
| SetI | ASST | 2 cut(s) | 28, 84 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 311 |
| Sse9I | AATT | 5 cut(s) | 41, 46, 119, 123, 329 |
| SseBI | AGGCCT | 1 cut(s) | 267 |
| SsiI | CCGC | 2 cut(s) | 59, 95 |
| SspMI | CTAG | 3 cut(s) | 66, 114, 302 |
| StuI | AGGCCT | 1 cut(s) | 267 |
| StyI | CCWWGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 5 cut(s) | 41, 46, 119, 123, 329 |
| TatI | WGTACW | 1 cut(s) | 298 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 2 cut(s) | 5, 242 |
| Tru1I | TTAA | 4 cut(s) | 44, 122, 158, 167 |
| Tru9I | TTAA | 4 cut(s) | 44, 122, 158, 167 |
| TspDTI | ATGAA | 1 cut(s) | 203 |
| VspI | ATTAAT | 1 cut(s) | 122 |
| XspI | CTAG | 3 cut(s) | 66, 114, 302 |
| ZrmI | AGTACT | 1 cut(s) | 300 |