Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 59 - 181 | 1e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 158 |
| AccIII | TCCGGA | 1 cut(s) | 583 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AfaI | GTAC | 2 cut(s) | 5, 363 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 278, 570 |
| AgsI | TTSAA | 3 cut(s) | 46, 100, 105 |
| AjnI | CCWGG | 2 cut(s) | 157, 271 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 237, 269 |
| AleI | CACNNNNGTG | 1 cut(s) | 336 |
| AluBI | AGCT | 1 cut(s) | 426 |
| AluI | AGCT | 1 cut(s) | 426 |
| AlwI | GGATC | 1 cut(s) | 201 |
| Aor13HI | TCCGGA | 1 cut(s) | 583 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 318, 350 |
| AspLEI | GCGC | 1 cut(s) | 523 |
| BbvCI | CCTCAGC | 1 cut(s) | 422 |
| BccI | CCATC | 2 cut(s) | 176, 304 |
| BciT130I | CCWGG | 2 cut(s) | 159, 273 |
| BclI | TGATCA | 2 cut(s) | 165, 238 |
| BfaI | CTAG | 2 cut(s) | 14, 288 |
| Bme1390I | CCNGG | 2 cut(s) | 159, 273 |
| BmiI | GGNNCC | 1 cut(s) | 582 |
| BmrFI | CCNGG | 2 cut(s) | 159, 273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 422 |
| BpuEI | CTTGAG | 1 cut(s) | 484 |
| BsaJI | CCNNGG | 2 cut(s) | 157, 272 |
| BsaWI | WCCGGW | 1 cut(s) | 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 426, 456 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 278, 570 |
| BseAI | TCCGGA | 1 cut(s) | 583 |
| BseBI | CCWGG | 2 cut(s) | 159, 273 |
| BseDI | CCNNGG | 2 cut(s) | 157, 272 |
| BseGI | GGATG | 2 cut(s) | 241, 451 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 278, 570 |
| BseMII | CTCAG | 2 cut(s) | 436, 441 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BslFI | GGGAC | 1 cut(s) | 98 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 278, 570 |
| BsmFI | GGGAC | 1 cut(s) | 98 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| Bsp13I | TCCGGA | 1 cut(s) | 583 |
| Bsp1407I | TGTACA | 1 cut(s) | 361 |
| Bsp143I | GATC | 3 cut(s) | 165, 193, 238 |
| BspCNI | CTCAG | 2 cut(s) | 435, 440 |
| BspEI | TCCGGA | 1 cut(s) | 583 |
| BspLI | GGNNCC | 1 cut(s) | 582 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BsrGI | TGTACA | 1 cut(s) | 361 |
| BssECI | CCNNGG | 2 cut(s) | 157, 272 |
| BssMI | GATC | 3 cut(s) | 165, 193, 238 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 273 |
| Bst4CI | ACNGT | 1 cut(s) | 42 |
| BstAUI | TGTACA | 1 cut(s) | 361 |
| BstDEI | CTNAG | 4 cut(s) | 422, 427, 464, 593 |
| BstF5I | GGATG | 2 cut(s) | 241, 451 |
| BstHHI | GCGC | 1 cut(s) | 523 |
| BstKTI | GATC | 3 cut(s) | 168, 196, 241 |
| BstMBI | GATC | 3 cut(s) | 165, 193, 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 539 |
| BstNI | CCWGG | 2 cut(s) | 159, 273 |
| BstSCI | CCNGG | 2 cut(s) | 157, 271 |
| BtsCI | GGATG | 2 cut(s) | 241, 451 |
| CfoI | GCGC | 1 cut(s) | 523 |
| Csp6I | GTAC | 2 cut(s) | 4, 362 |
| CviAII | CATG | 2 cut(s) | 359, 599 |
| CviJI | RGCY | 6 cut(s) | 28, 156, 314, 426, 533, 592 |
| CviKI_1 | RGCY | 6 cut(s) | 28, 156, 314, 426, 533, 592 |
| CviQI | GTAC | 2 cut(s) | 4, 362 |
| DdeI | CTNAG | 4 cut(s) | 422, 427, 464, 593 |
| DpnI | GATC | 3 cut(s) | 167, 195, 240 |
| DpnII | GATC | 3 cut(s) | 165, 193, 238 |
| EcoRI | GAATTC | 1 cut(s) | 100 |
| EcoRII | CCWGG | 2 cut(s) | 157, 271 |
| FaeI | CATG | 2 cut(s) | 362, 602 |
| FaiI | YATR | 9 cut(s) | 63, 164, 297, 360, 528, 540, 551, 561, 600 |
| FaqI | GGGAC | 1 cut(s) | 98 |
| FatI | CATG | 2 cut(s) | 358, 598 |
| FbaI | TGATCA | 2 cut(s) | 165, 238 |
| FokI | GGATG | 2 cut(s) | 248, 458 |
| FspBI | CTAG | 2 cut(s) | 14, 288 |
| GlaI | GCGC | 1 cut(s) | 522 |
| HapII | CCGG | 1 cut(s) | 584 |
| HhaI | GCGC | 1 cut(s) | 523 |
| Hin1II | CATG | 2 cut(s) | 362, 602 |
| Hin6I | GCGC | 1 cut(s) | 521 |
| HinP1I | GCGC | 1 cut(s) | 521 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HinfI | GANTC | 2 cut(s) | 110, 555 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| HpaII | CCGG | 1 cut(s) | 584 |
| Hpy166II | GTNNAC | 3 cut(s) | 121, 354, 394 |
| Hpy188I | TCNGA | 2 cut(s) | 198, 430 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 242, 501, 584 |
| Hpy8I | GTNNAC | 3 cut(s) | 121, 354, 394 |
| HpyAV | CCTTC | 3 cut(s) | 85, 127, 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 1 cut(s) | 410 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 539 |
| HpyF3I | CTNAG | 4 cut(s) | 422, 427, 464, 593 |
| Hsp92II | CATG | 2 cut(s) | 362, 602 |
| HspAI | GCGC | 1 cut(s) | 521 |
| Kpn2I | TCCGGA | 1 cut(s) | 583 |
| Ksp22I | TGATCA | 2 cut(s) | 165, 238 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 165, 193, 238 |
| LmnI | GCTCC | 1 cut(s) | 434 |
| LpnPI | CCDG | 9 cut(s) | 36, 144, 171, 258, 285, 329, 333, 350, 597 |
| MaeI | CTAG | 2 cut(s) | 14, 288 |
| MaeIII | GTNAC | 1 cut(s) | 620 |
| MalI | GATC | 3 cut(s) | 167, 195, 240 |
| MboI | GATC | 3 cut(s) | 165, 193, 238 |
| MluCI | AATT | 1 cut(s) | 100 |
| MlyI | GAGTC | 1 cut(s) | 119 |
| MmeI | TCCRAC | 1 cut(s) | 56 |
| MnlI | CCTC | 5 cut(s) | 51, 59, 119, 179, 431 |
| MroI | TCCGGA | 1 cut(s) | 583 |
| MseI | TTAA | 1 cut(s) | 393 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 2 cut(s) | 159, 273 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 2 cut(s) | 159, 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 539 |
| NdeII | GATC | 3 cut(s) | 165, 193, 238 |
| NlaIII | CATG | 2 cut(s) | 362, 602 |
| NlaIV | GGNNCC | 1 cut(s) | 582 |
| OliI | CACNNNNGTG | 1 cut(s) | 336 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 555 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 158 |
| PleI | GAGTC | 1 cut(s) | 118 |
| PpsI | GAGTC | 1 cut(s) | 118 |
| Psp6I | CCWGG | 2 cut(s) | 157, 271 |
| PspGI | CCWGG | 2 cut(s) | 157, 271 |
| PspN4I | GGNNCC | 1 cut(s) | 582 |
| RsaI | GTAC | 2 cut(s) | 5, 363 |
| RsaNI | GTAC | 2 cut(s) | 4, 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| SaqAI | TTAA | 1 cut(s) | 393 |
| Sau3AI | GATC | 3 cut(s) | 165, 193, 238 |
| SchI | GAGTC | 1 cut(s) | 119 |
| ScrFI | CCNGG | 2 cut(s) | 159, 273 |
| SetI | ASST | 7 cut(s) | 62, 130, 274, 369, 423, 428, 566 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| SmlI | CTYRAG | 1 cut(s) | 499 |
| SmoI | CTYRAG | 1 cut(s) | 499 |
| Sse9I | AATT | 1 cut(s) | 100 |
| SspMI | CTAG | 2 cut(s) | 14, 288 |
| StyD4I | CCNGG | 2 cut(s) | 157, 271 |
| TaaI | ACNGT | 1 cut(s) | 42 |
| TasI | AATT | 1 cut(s) | 100 |
| TatI | WGTACW | 1 cut(s) | 361 |
| TfiI | GAWTC | 1 cut(s) | 555 |
| Tru1I | TTAA | 1 cut(s) | 393 |
| Tru9I | TTAA | 1 cut(s) | 393 |
| TspDTI | ATGAA | 1 cut(s) | 392 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 158 |
| XapI | RAATTY | 1 cut(s) | 100 |
| XbaI | TCTAGA | 1 cut(s) | 13 |
| XspI | CTAG | 2 cut(s) | 14, 288 |