Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 114 | 1.1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 220 |
| AgsI | TTSAA | 1 cut(s) | 306 |
| AhlI | ACTAGT | 1 cut(s) | 383 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 24, 56 |
| AluBI | AGCT | 2 cut(s) | 115, 266 |
| AluI | AGCT | 2 cut(s) | 115, 266 |
| AlwI | GGATC | 1 cut(s) | 94 |
| AoxI | GGCC | 1 cut(s) | 144 |
| AseI | ATTAAT | 1 cut(s) | 206 |
| AspS9I | GGNCC | 2 cut(s) | 145, 403 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| AvaII | GGWCC | 1 cut(s) | 403 |
| BccI | CCATC | 1 cut(s) | 233 |
| BciVI | GTATCC | 1 cut(s) | 373 |
| BcuI | ACTAGT | 1 cut(s) | 383 |
| BfaI | CTAG | 2 cut(s) | 335, 384 |
| BfuI | GTATCC | 1 cut(s) | 373 |
| Bme18I | GGWCC | 1 cut(s) | 403 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 403 |
| BmsI | GCATC | 1 cut(s) | 301 |
| BsaBI | GATNNNNATC | 1 cut(s) | 98 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 24, 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bse8I | GATNNNNATC | 1 cut(s) | 98 |
| BseGI | GGATG | 4 cut(s) | 10, 23, 316, 345 |
| BseJI | GATNNNNATC | 1 cut(s) | 98 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BseRI | GAGGAG | 1 cut(s) | 78 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BsnI | GGCC | 1 cut(s) | 146 |
| Bsp143I | GATC | 3 cut(s) | 58, 99, 123 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 1 cut(s) | 409 |
| BspHI | TCATGA | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 94 |
| BssMI | GATC | 3 cut(s) | 58, 99, 123 |
| BstDEI | CTNAG | 1 cut(s) | 417 |
| BstF5I | GGATG | 4 cut(s) | 10, 23, 316, 345 |
| BstKTI | GATC | 3 cut(s) | 61, 102, 126 |
| BstMBI | GATC | 3 cut(s) | 58, 99, 123 |
| BstNSI | RCATGY | 1 cut(s) | 278 |
| BsuI | GTATCC | 1 cut(s) | 373 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtsCI | GGATG | 4 cut(s) | 10, 23, 316, 345 |
| CciI | TCATGA | 1 cut(s) | 291 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 403 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 357, 392 |
| CviAII | CATG | 3 cut(s) | 119, 275, 292 |
| CviJI | RGCY | 5 cut(s) | 115, 146, 266, 338, 397 |
| CviKI_1 | RGCY | 5 cut(s) | 115, 146, 266, 338, 397 |
| DdeI | CTNAG | 1 cut(s) | 417 |
| DpnI | GATC | 3 cut(s) | 60, 101, 125 |
| DpnII | GATC | 3 cut(s) | 58, 99, 123 |
| Eco47I | GGWCC | 1 cut(s) | 403 |
| FaeI | CATG | 3 cut(s) | 122, 278, 295 |
| FaiI | YATR | 9 cut(s) | 67, 80, 120, 198, 249, 276, 293, 300, 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 212, 244 |
| FatI | CATG | 3 cut(s) | 118, 274, 291 |
| FokI | GGATG | 4 cut(s) | 17, 30, 323, 332 |
| FspBI | CTAG | 2 cut(s) | 335, 384 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| Hin1II | CATG | 3 cut(s) | 122, 278, 295 |
| HinfI | GANTC | 4 cut(s) | 179, 185, 342, 419 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 3 cut(s) | 93, 184, 418 |
| Hpy188III | TCNNGA | 3 cut(s) | 127, 292, 359 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 2 cut(s) | 416, 424 |
| HpyCH4V | TGCA | 1 cut(s) | 274 |
| HpyF3I | CTNAG | 1 cut(s) | 417 |
| Hsp92II | CATG | 3 cut(s) | 122, 278, 295 |
| Kzo9I | GATC | 3 cut(s) | 58, 99, 123 |
| LmnI | GCTCC | 2 cut(s) | 32, 91 |
| LpnPI | CCDG | 1 cut(s) | 161 |
| LweI | GCATC | 1 cut(s) | 301 |
| MaeI | CTAG | 2 cut(s) | 335, 384 |
| MalI | GATC | 3 cut(s) | 60, 101, 125 |
| MboI | GATC | 3 cut(s) | 58, 99, 123 |
| MluCI | AATT | 4 cut(s) | 27, 140, 203, 207 |
| MlyI | GAGTC | 1 cut(s) | 428 |
| MnlI | CCTC | 2 cut(s) | 99, 186 |
| MseI | TTAA | 2 cut(s) | 206, 210 |
| NdeII | GATC | 3 cut(s) | 58, 99, 123 |
| NlaIII | CATG | 3 cut(s) | 122, 278, 295 |
| NspI | RCATGY | 1 cut(s) | 278 |
| PacI | TTAATTAA | 1 cut(s) | 210 |
| PagI | TCATGA | 1 cut(s) | 291 |
| PfeI | GAWTC | 3 cut(s) | 179, 185, 342 |
| PleI | GAGTC | 1 cut(s) | 427 |
| PpsI | GAGTC | 1 cut(s) | 427 |
| PshBI | ATTAAT | 1 cut(s) | 206 |
| PspPI | GGNCC | 2 cut(s) | 145, 403 |
| SaqAI | TTAA | 2 cut(s) | 206, 210 |
| Sau3AI | GATC | 3 cut(s) | 58, 99, 123 |
| Sau96I | GGNCC | 2 cut(s) | 145, 403 |
| SchI | GAGTC | 1 cut(s) | 428 |
| SetI | ASST | 5 cut(s) | 117, 197, 268, 408, 435 |
| SfaNI | GCATC | 1 cut(s) | 301 |
| SinI | GGWCC | 1 cut(s) | 403 |
| SpeI | ACTAGT | 1 cut(s) | 383 |
| Sse9I | AATT | 4 cut(s) | 27, 140, 203, 207 |
| SspMI | CTAG | 2 cut(s) | 335, 384 |
| TaqI | TCGA | 2 cut(s) | 98, 262 |
| TasI | AATT | 4 cut(s) | 27, 140, 203, 207 |
| TfiI | GAWTC | 3 cut(s) | 179, 185, 342 |
| Tru1I | TTAA | 2 cut(s) | 206, 210 |
| Tru9I | TTAA | 2 cut(s) | 206, 210 |
| TspDTI | ATGAA | 6 cut(s) | 26, 107, 177, 280, 308, 334 |
| TspGWI | ACGGA | 1 cut(s) | 378 |
| VpaK11BI | GGWCC | 1 cut(s) | 403 |
| VspI | ATTAAT | 1 cut(s) | 206 |
| XceI | RCATGY | 1 cut(s) | 278 |
| XspI | CTAG | 2 cut(s) | 335, 384 |