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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 213 |
| AcuI | CTGAAG | 2 cut(s) | 141, 339 |
| AfaI | GTAC | 1 cut(s) | 183 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 348 |
| AflIII | ACRYGT | 2 cut(s) | 184, 254 |
| AgeI | ACCGGT | 1 cut(s) | 341 |
| AgsI | TTSAA | 3 cut(s) | 94, 146, 153 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 255 |
| AjiI | CACGTC | 2 cut(s) | 255, 291 |
| AluBI | AGCT | 2 cut(s) | 11, 317 |
| AluI | AGCT | 2 cut(s) | 11, 317 |
| Alw26I | GTCTC | 1 cut(s) | 175 |
| AoxI | GGCC | 3 cut(s) | 84, 275, 308 |
| ApeKI | GCWGC | 3 cut(s) | 25, 116, 209 |
| AsiGI | ACCGGT | 1 cut(s) | 341 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 141 |
| AspLEI | GCGC | 1 cut(s) | 214 |
| AspS9I | GGNCC | 1 cut(s) | 351 |
| AsuII | TTCGAA | 1 cut(s) | 190 |
| AvaII | GGWCC | 1 cut(s) | 351 |
| BbvI | GCAGC | 3 cut(s) | 12, 103, 196 |
| BccI | CCATC | 1 cut(s) | 302 |
| BcoDI | GTCTC | 1 cut(s) | 175 |
| BfaI | CTAG | 2 cut(s) | 267, 330 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 283 |
| BglII | AGATCT | 1 cut(s) | 160 |
| BisI | GCNGC | 3 cut(s) | 26, 117, 210 |
| BlsI | GCNGC | 3 cut(s) | 27, 118, 211 |
| Bme18I | GGWCC | 1 cut(s) | 351 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 255 |
| BmgBI | CACGTC | 2 cut(s) | 255, 291 |
| BmgT120I | GGNCC | 1 cut(s) | 351 |
| BmiI | GGNNCC | 1 cut(s) | 353 |
| Bpu14I | TTCGAA | 1 cut(s) | 190 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaWI | WCCGGW | 1 cut(s) | 341 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 74, 104 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 348 |
| Bse118I | RCCGGY | 1 cut(s) | 341 |
| Bse1I | ACTGG | 1 cut(s) | 202 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BseMII | CTCAG | 1 cut(s) | 165 |
| BseNI | ACTGG | 1 cut(s) | 202 |
| BseXI | GCAGC | 3 cut(s) | 12, 103, 196 |
| BseYI | CCCAGC | 1 cut(s) | 30 |
| BshFI | GGCC | 3 cut(s) | 86, 277, 310 |
| BshTI | ACCGGT | 1 cut(s) | 341 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiSI | CCGG | 1 cut(s) | 342 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BsmAI | GTCTC | 1 cut(s) | 175 |
| BsnI | GGCC | 3 cut(s) | 86, 277, 310 |
| Bsp119I | TTCGAA | 1 cut(s) | 190 |
| Bsp1407I | TGTACA | 1 cut(s) | 181 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| BspANI | GGCC | 3 cut(s) | 86, 277, 310 |
| BspCNI | CTCAG | 1 cut(s) | 166 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspLI | GGNNCC | 1 cut(s) | 353 |
| BspT104I | TTCGAA | 1 cut(s) | 190 |
| BsrFI | RCCGGY | 1 cut(s) | 341 |
| BsrGI | TGTACA | 1 cut(s) | 181 |
| BsrI | ACTGG | 1 cut(s) | 202 |
| BssAI | RCCGGY | 1 cut(s) | 341 |
| BssMI | GATC | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 1 cut(s) | 360 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstAUI | TGTACA | 1 cut(s) | 181 |
| BstBI | TTCGAA | 1 cut(s) | 190 |
| BstDEI | CTNAG | 1 cut(s) | 174 |
| BstHHI | GCGC | 1 cut(s) | 214 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMAI | GTCTC | 1 cut(s) | 175 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 31, 283 |
| BstNSI | RCATGY | 1 cut(s) | 188 |
| BstV1I | GCAGC | 3 cut(s) | 12, 103, 196 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuRI | GGCC | 3 cut(s) | 86, 277, 310 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtrI | CACGTC | 2 cut(s) | 255, 291 |
| BtsIMutI | CAGTG | 1 cut(s) | 113 |
| CfoI | GCGC | 1 cut(s) | 214 |
| Cfr10I | RCCGGY | 1 cut(s) | 341 |
| Cfr13I | GGNCC | 1 cut(s) | 351 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| Csp6I | GTAC | 1 cut(s) | 182 |
| CspAI | ACCGGT | 1 cut(s) | 341 |
| CviAII | CATG | 3 cut(s) | 42, 185, 217 |
| CviJI | RGCY | 9 cut(s) | 11, 25, 86, 237, 266, 277, 286, 310, 317 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 25, 86, 237, 266, 277, 286, 310, 317 |
| CviQI | GTAC | 1 cut(s) | 182 |
| DdeI | CTNAG | 1 cut(s) | 174 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| DriI | GACNNNNNGTC | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco147I | AGGCCT | 2 cut(s) | 86, 310 |
| Eco47I | GGWCC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 2 cut(s) | 141, 339 |
| FaeI | CATG | 3 cut(s) | 45, 188, 220 |
| FaiI | YATR | 4 cut(s) | 43, 186, 218, 338 |
| FatI | CATG | 3 cut(s) | 41, 184, 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 26, 117, 210 |
| Fsp4HI | GCNGC | 3 cut(s) | 26, 117, 210 |
| FspBI | CTAG | 2 cut(s) | 267, 330 |
| FspI | TGCGCA | 1 cut(s) | 213 |
| GlaI | GCGC | 1 cut(s) | 213 |
| GluI | GCNGC | 3 cut(s) | 26, 117, 210 |
| GsaI | CCCAGC | 1 cut(s) | 34 |
| HaeIII | GGCC | 3 cut(s) | 86, 277, 310 |
| HapII | CCGG | 1 cut(s) | 342 |
| HhaI | GCGC | 1 cut(s) | 214 |
| Hin1II | CATG | 3 cut(s) | 45, 188, 220 |
| Hin6I | GCGC | 1 cut(s) | 212 |
| HinP1I | GCGC | 1 cut(s) | 212 |
| HinfI | GANTC | 2 cut(s) | 94, 142 |
| HpaII | CCGG | 1 cut(s) | 342 |
| Hpy166II | GTNNAC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 175 |
| Hpy8I | GTNNAC | 1 cut(s) | 17 |
| Hpy99I | CGWCG | 1 cut(s) | 256 |
| HpyAV | CCTTC | 4 cut(s) | 67, 116, 186, 288 |
| HpyCH4III | ACNGT | 1 cut(s) | 360 |
| HpyCH4IV | ACGT | 3 cut(s) | 155, 254, 290 |
| HpyCH4V | TGCA | 1 cut(s) | 225 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 31, 283 |
| HpyF3I | CTNAG | 1 cut(s) | 174 |
| HpySE526I | ACGT | 3 cut(s) | 155, 254, 290 |
| Hsp92II | CATG | 3 cut(s) | 45, 188, 220 |
| HspAI | GCGC | 1 cut(s) | 212 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LpnPI | CCDG | 4 cut(s) | 44, 183, 251, 355 |
| Lsp1109I | GCAGC | 3 cut(s) | 12, 103, 196 |
| MaeI | CTAG | 2 cut(s) | 267, 330 |
| MaeII | ACGT | 3 cut(s) | 155, 254, 290 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MboII | GAAGA | 2 cut(s) | 149, 332 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MluCI | AATT | 3 cut(s) | 48, 66, 129 |
| MnlI | CCTC | 2 cut(s) | 76, 263 |
| MroXI | GAANNNNTTC | 1 cut(s) | 141 |
| MseI | TTAA | 2 cut(s) | 69, 165 |
| MspI | CCGG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 31, 283 |
| NdeII | GATC | 1 cut(s) | 160 |
| NlaIII | CATG | 3 cut(s) | 45, 188, 220 |
| NlaIV | GGNNCC | 1 cut(s) | 353 |
| NsbI | TGCGCA | 1 cut(s) | 213 |
| NspI | RCATGY | 1 cut(s) | 188 |
| NspV | TTCGAA | 1 cut(s) | 190 |
| PceI | AGGCCT | 2 cut(s) | 86, 310 |
| PciI | ACATGT | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 141 |
| PfeI | GAWTC | 2 cut(s) | 94, 142 |
| PinAI | ACCGGT | 1 cut(s) | 341 |
| PkrI | GCNGC | 3 cut(s) | 27, 118, 211 |
| PscI | ACATGT | 1 cut(s) | 184 |
| PspFI | CCCAGC | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 1 cut(s) | 353 |
| PspPI | GGNCC | 1 cut(s) | 351 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 183 |
| RsaNI | GTAC | 1 cut(s) | 182 |
| SaqAI | TTAA | 2 cut(s) | 69, 165 |
| SatI | GCNGC | 3 cut(s) | 26, 117, 210 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| Sau96I | GGNCC | 1 cut(s) | 351 |
| SetI | ASST | 6 cut(s) | 13, 158, 257, 274, 293, 319 |
| SfuI | TTCGAA | 1 cut(s) | 190 |
| SinI | GGWCC | 1 cut(s) | 351 |
| Sse9I | AATT | 3 cut(s) | 48, 66, 129 |
| SseBI | AGGCCT | 2 cut(s) | 86, 310 |
| SspMI | CTAG | 2 cut(s) | 267, 330 |
| StuI | AGGCCT | 2 cut(s) | 86, 310 |
| TaaI | ACNGT | 1 cut(s) | 360 |
| TaiI | ACGT | 3 cut(s) | 158, 257, 293 |
| TaqI | TCGA | 3 cut(s) | 190, 259, 297 |
| TasI | AATT | 3 cut(s) | 48, 66, 129 |
| TatI | WGTACW | 1 cut(s) | 181 |
| TfiI | GAWTC | 2 cut(s) | 94, 142 |
| Tru1I | TTAA | 2 cut(s) | 69, 165 |
| Tru9I | TTAA | 2 cut(s) | 69, 165 |
| TscAI | CASTG | 1 cut(s) | 113 |
| TseI | GCWGC | 3 cut(s) | 25, 116, 209 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 1 cut(s) | 351 |
| XceI | RCATGY | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 141 |
| XspI | CTAG | 2 cut(s) | 267, 330 |