Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 11 - 96 | 2.5e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 294 |
| AciI | CCGC | 1 cut(s) | 174 |
| AcsI | RAATTY | 1 cut(s) | 80 |
| AcuI | CTGAAG | 1 cut(s) | 252 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AluBI | AGCT | 2 cut(s) | 55, 137 |
| AluI | AGCT | 2 cut(s) | 55, 137 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| Alw26I | GTCTC | 2 cut(s) | 196, 212 |
| Aor13HI | TCCGGA | 1 cut(s) | 294 |
| ApoI | RAATTY | 1 cut(s) | 80 |
| AxyI | CCTNAGG | 1 cut(s) | 212 |
| BanII | GRGCYC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BccI | CCATC | 1 cut(s) | 173 |
| BcoDI | GTCTC | 2 cut(s) | 196, 212 |
| BfaI | CTAG | 4 cut(s) | 89, 131, 146, 322 |
| BisI | GCNGC | 1 cut(s) | 174 |
| BlsI | GCNGC | 1 cut(s) | 175 |
| Bsa29I | ATCGAT | 1 cut(s) | 244 |
| BsaWI | WCCGGW | 1 cut(s) | 294 |
| Bse21I | CCTNAGG | 1 cut(s) | 212 |
| BseAI | TCCGGA | 1 cut(s) | 294 |
| BseCI | ATCGAT | 1 cut(s) | 244 |
| BseMII | CTCAG | 2 cut(s) | 42, 186 |
| Bsh1285I | CGRYCG | 1 cut(s) | 248 |
| BshVI | ATCGAT | 1 cut(s) | 244 |
| BsiEI | CGRYCG | 1 cut(s) | 248 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiSI | CCGG | 1 cut(s) | 295 |
| BsmAI | GTCTC | 2 cut(s) | 196, 212 |
| BsmBI | CGTCTC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| Bsp13I | TCCGGA | 1 cut(s) | 294 |
| Bsp143I | GATC | 2 cut(s) | 111, 245 |
| BspACI | CCGC | 1 cut(s) | 174 |
| BspCNI | CTCAG | 2 cut(s) | 43, 187 |
| BspDI | ATCGAT | 1 cut(s) | 244 |
| BspEI | TCCGGA | 1 cut(s) | 294 |
| BssMI | GATC | 2 cut(s) | 111, 245 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 51, 195, 212 |
| BstKTI | GATC | 2 cut(s) | 114, 248 |
| BstMAI | GTCTC | 2 cut(s) | 196, 212 |
| BstMBI | GATC | 2 cut(s) | 111, 245 |
| BstMCI | CGRYCG | 1 cut(s) | 248 |
| BstNSI | RCATGY | 1 cut(s) | 30 |
| Bsu15I | ATCGAT | 1 cut(s) | 244 |
| Bsu36I | CCTNAGG | 1 cut(s) | 212 |
| BsuTUI | ATCGAT | 1 cut(s) | 244 |
| ClaI | ATCGAT | 1 cut(s) | 244 |
| CviAII | CATG | 1 cut(s) | 27 |
| CviJI | RGCY | 3 cut(s) | 55, 137, 269 |
| CviKI_1 | RGCY | 3 cut(s) | 55, 137, 269 |
| DdeI | CTNAG | 3 cut(s) | 51, 195, 212 |
| DpnI | GATC | 2 cut(s) | 113, 247 |
| DpnII | GATC | 2 cut(s) | 111, 245 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Ecl136II | GAGCTC | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 1 cut(s) | 57 |
| Eco32I | GATATC | 1 cut(s) | 34 |
| Eco53kI | GAGCTC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 1 cut(s) | 252 |
| Eco81I | CCTNAGG | 1 cut(s) | 212 |
| EcoICRI | GAGCTC | 1 cut(s) | 55 |
| EcoRV | GATATC | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 1 cut(s) | 57 |
| Esp3I | CGTCTC | 1 cut(s) | 196 |
| FaeI | CATG | 1 cut(s) | 30 |
| FaiI | YATR | 2 cut(s) | 28, 171 |
| FatI | CATG | 1 cut(s) | 26 |
| Fnu4HI | GCNGC | 1 cut(s) | 174 |
| FriOI | GRGCYC | 1 cut(s) | 57 |
| Fsp4HI | GCNGC | 1 cut(s) | 174 |
| FspBI | CTAG | 4 cut(s) | 89, 131, 146, 322 |
| GluI | GCNGC | 1 cut(s) | 174 |
| HapII | CCGG | 1 cut(s) | 295 |
| Hin1II | CATG | 1 cut(s) | 30 |
| HinfI | GANTC | 2 cut(s) | 119, 205 |
| HpaII | CCGG | 1 cut(s) | 295 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 4 cut(s) | 111, 124, 196, 232 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 131, 295 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 1 cut(s) | 258 |
| HpyF3I | CTNAG | 3 cut(s) | 51, 195, 212 |
| Hsp92II | CATG | 1 cut(s) | 30 |
| Kpn2I | TCCGGA | 1 cut(s) | 294 |
| Kzo9I | GATC | 2 cut(s) | 111, 245 |
| LmnI | GCTCC | 1 cut(s) | 5 |
| LpnPI | CCDG | 2 cut(s) | 57, 308 |
| MaeI | CTAG | 4 cut(s) | 89, 131, 146, 322 |
| MaeIII | GTNAC | 1 cut(s) | 308 |
| MalI | GATC | 2 cut(s) | 113, 247 |
| MboI | GATC | 2 cut(s) | 111, 245 |
| MboII | GAAGA | 2 cut(s) | 94, 170 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MluCI | AATT | 2 cut(s) | 80, 218 |
| MlyI | GAGTC | 2 cut(s) | 128, 214 |
| MnlI | CCTC | 3 cut(s) | 16, 117, 154 |
| MroI | TCCGGA | 1 cut(s) | 294 |
| MseI | TTAA | 2 cut(s) | 201, 222 |
| MspI | CCGG | 1 cut(s) | 295 |
| NdeII | GATC | 2 cut(s) | 111, 245 |
| NlaIII | CATG | 1 cut(s) | 30 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NspI | RCATGY | 1 cut(s) | 30 |
| PkrI | GCNGC | 1 cut(s) | 175 |
| Ple19I | CGATCG | 1 cut(s) | 248 |
| PleI | GAGTC | 2 cut(s) | 127, 213 |
| PpsI | GAGTC | 2 cut(s) | 127, 213 |
| Psp124BI | GAGCTC | 1 cut(s) | 57 |
| PvuI | CGATCG | 1 cut(s) | 248 |
| SacI | GAGCTC | 1 cut(s) | 57 |
| SaqAI | TTAA | 2 cut(s) | 201, 222 |
| SatI | GCNGC | 1 cut(s) | 174 |
| Sau3AI | GATC | 2 cut(s) | 111, 245 |
| SchI | GAGTC | 2 cut(s) | 128, 214 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SetI | ASST | 4 cut(s) | 57, 76, 139, 267 |
| Sse9I | AATT | 2 cut(s) | 80, 218 |
| SsiI | CCGC | 1 cut(s) | 174 |
| SspMI | CTAG | 4 cut(s) | 89, 131, 146, 322 |
| SstI | GAGCTC | 1 cut(s) | 57 |
| TaqI | TCGA | 2 cut(s) | 244, 275 |
| TaqII | GACCGA | 1 cut(s) | 28 |
| TasI | AATT | 2 cut(s) | 80, 218 |
| TauI | GCSGC | 1 cut(s) | 176 |
| Tru1I | TTAA | 2 cut(s) | 201, 222 |
| Tru9I | TTAA | 2 cut(s) | 201, 222 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 1 cut(s) | 277 |
| XapI | RAATTY | 1 cut(s) | 80 |
| XbaI | TCTAGA | 2 cut(s) | 88, 130 |
| XceI | RCATGY | 1 cut(s) | 30 |
| XspI | CTAG | 4 cut(s) | 89, 131, 146, 322 |