Rorug06G0480400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000072
Physical Location & Seq
Forward (+)
60207296 .. 60211917
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0480400.1

Sequence Viewer

Length: 1884 bp
ATGGCTCCTCGGAGGTTGGTGGTCCTCCTCCTAATTTACTCCGTCCTACTCAATTTTTGTGGCGCGTTTGCTTCAACCGCCGATGATCAACGCCGTCCGATGATCCTTCCTCTCCATCTCTCCTCCCCCGACGACCACCGGCGAGCCTTCGACGGTCGGCGTCTCCAGAGATCGGAGCCGAACGCGCACATGAGGCTCCACGATGATCTCCTTACCAACGGGTACTACACGACGCGGCTGTGGATTGGAACACCGCCTCAGATGTTCGCTCTGATTGTGGATACGGGGAGTACTGTCACTTATGTGCCTTGCTCTGACTGTGAAGCCTGCGGTAACCATCAGGACCCTAGGTTTCAACCCGATTTATCTAGCACGTACCAACCTGTAAAGTGTAATATCAATTGCAACTGTGACGATAAAGGAAACCAATGCACTTATGAGAGGCGCTATGCTGAGCAGAGCTCCAGCAGTGGTGTGCTTGGTGAGGATGTCATTTCTTTTGGCAATGAGAGTGCACTTGTGCCCCAGCGTGCTGTTTTTGGTTGCGAGAATATTGAAACCGGTGATCTTTACAGCCAACGTGCCGATGGCATAATGGGCTTGGGCCGTGGTCAGCTTAGCGTCATGGACCAGCTTGTTGATAAGGGTGTTATTAGTGATTCATTTTCATTGTGTTATGGAGGAATGGGTGTAGGTGGGGGTGCTATGGTTCTAGGTGGGATTAAATCCCCCCCGGATATGGTATTTACCCATTCTGATCCCTTTCGCAGTCCATATTACAATATTGAACTGAAGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTAAACCCGAAGGTGTTTGATGAAAAGCATGGAACTGTCTTGGATAGTGGAACGACATATGCATACTTTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTATTATGAAGGAAACTCATTTCCTCAAACAAGTCCATGGTCCTGACCCAAATTATAAAGATATCTGTTTTTCAGGTGCTGGAAGGGATGTCACCCAACTATCAAAAGTTTTTCCACAGGTTGATATGATATTCAGCAAGGGACAGAAATTTTCACTGTCTCCCGAGAACTATTTGTTTCCGCATACGAAGGTTAGCGGGGCTTATTGCTTGGGAATTTTTGAAAATGGGGATTCAACCACTCTTTTAGGAGGAATTCTTGTACGTAATACCCTTGTGACATACGATCGAGCAGACAATAAGATTGGTTTTTGGAAAACCAATTGTTCTGAACTATGGAAGAGTTTAAATCATGAGAATGCTCAGGCCCCATCTTCTAACGACTGGAATATGAGTGGAGGGATTGCTCCTGACATCGCCCCAGCTGGATTGCCTCAAACTGATCTTCCAGGTGAACTTCAAATAGGGCAGATAAGTTTCGATATGATGCTCAACATCAGCAACTCTATGAAACCCAACTTCACAGAACTCGCAGAGTCTATTGCCCATGAGCTGGAAGTTGATATTTCTCAGGTTCACTTGAGGAACTACACTATTTCAGGAAATGATTTACTCATTAAGTGGACTATCGTACCTGATGAATCTGCCAATAGCTTTACTACTACCAAAGCAATGAACATAATTCGGCGCTTAAGGGAACATCAGATGCAGCTTCCCCATAAATTTGGGAGTTATCAGCTGGTCAAATTGAAAGTTGAACCTCAAATAAAGCGGTCATGGTGGGAGCAACATTCTTGGATGGTGGCAGTTGGAGTTTCAGTTGCCTCGGTTCTTGGACTATTAGCATTAGGGACATGGTTGGTTTGGAGATACAGATCGCGACAGGGCATGACTTATGAGCCTGTTGATGGTGTTGTTGGTGTGGTTGTTGCAGAGCAAGAACTTCAGCCCCTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

627

Amino Acids

69.74

Weight (kDa)

5.95

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 76 - 240 1.3e-36 Xylanase inhibitor N-terminal
Asp PF00026 76 - 412 5.4e-34 Eukaryotic aspartyl protease
TAXi_C PF14541 260 - 412 7e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AccB7I CCANNNNNTGG 1 cut(s) 1477
AccII CGCG 4 cut(s) 65, 185, 235, 1804
AciI CCGC 7 cut(s) 78, 235, 254, 330, 1106, 1122, 1696
AclWI GGATC 2 cut(s) 97, 752
AcsI RAATTY 4 cut(s) 1073, 1140, 1179, 1646
AcuI CTGAAG 2 cut(s) 812, 1853
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 5 cut(s) 224, 292, 377, 1188, 1557
AfiI CCNNNNNNNGG 4 cut(s) 172, 739, 1477, 1832
AflII CTTAAG 1 cut(s) 1615
AflIII ACRYGT 1 cut(s) 802
AgeI ACCGGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 1372
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 8 cut(s) 462, 616, 634, 1349, 1477, 1578, 1636, 1663
AluI AGCT 8 cut(s) 462, 616, 634, 1349, 1477, 1578, 1636, 1663
Alw21I GWGCWC 2 cut(s) 464, 517
Alw26I GTCTC 2 cut(s) 167, 1089
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 2 cut(s) 97, 752
AlwNI CAGNNNCTG 1 cut(s) 1004
Ama87I CYCGRG 1 cut(s) 1088
AoxI GGCC 2 cut(s) 604, 1290
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 1 cut(s) 1633
ApoI RAATTY 4 cut(s) 1073, 1140, 1179, 1646
AsiGI ACCGGT 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 4 cut(s) 65, 187, 447, 1614
AspS9I GGNCC 6 cut(s) 22, 343, 604, 628, 965, 1291
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 4 cut(s) 494, 575, 1009, 1388
AvaI CYCGRG 1 cut(s) 1088
AvaII GGWCC 4 cut(s) 22, 343, 628, 965
AvrII CCTAGG 1 cut(s) 347
BaeGI GKGCMC 2 cut(s) 517, 525
BaeI ACNNNNGTAYC 2 cut(s) 1539, 1572
BanII GRGCYC 1 cut(s) 464
Bbv12I GWGCWC 2 cut(s) 464, 517
BbvI GCAGC 1 cut(s) 1645
BccI CCATC 6 cut(s) 123, 345, 581, 1303, 1717, 1826
BceAI ACGGC 2 cut(s) 78, 591
BciT130I CCWGG 1 cut(s) 1374
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 2 cut(s) 167, 1089
BfaI CTAG 3 cut(s) 348, 369, 713
BfoI RGCGCY 2 cut(s) 448, 1615
BfrI CTTAAG 1 cut(s) 1615
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 236, 1634
BlnI CCTAGG 1 cut(s) 347
BlpI GCTNAGC 2 cut(s) 453, 617
BlsI GCNGC 2 cut(s) 237, 1635
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 734, 1374
Bme18I GGWCC 4 cut(s) 22, 343, 628, 965
BmeT110I CYCGRG 1 cut(s) 1088
BmgT120I GGNCC 6 cut(s) 22, 343, 604, 628, 965, 1291
BmiI GGNNCC 5 cut(s) 6, 177, 197, 345, 1293
BmrFI CCNGG 2 cut(s) 734, 1374
BmsI GCATC 4 cut(s) 892, 913, 1401, 1620
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 2 cut(s) 149, 448
Bpu10I CCTNAGC 1 cut(s) 1287
Bpu1102I GCTNAGC 2 cut(s) 453, 617
BpuEI CTTGAG 1 cut(s) 1525
BpuMI CCSGG 1 cut(s) 734
BsaAI YACGTR 2 cut(s) 375, 1190
BsaBI GATNNNNATC 1 cut(s) 1798
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 6 cut(s) 8, 347, 607, 732, 961, 1749
BsaWI WCCGGW 1 cut(s) 560
BsaXI ACNNNNNCTCC 2 cut(s) 1728, 1758
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 739, 1477, 1832
Bse118I RCCGGY 2 cut(s) 138, 560
Bse1I ACTGG 1 cut(s) 1313
Bse3DI GCAATG 2 cut(s) 511, 1602
Bse8I GATNNNNATC 1 cut(s) 1798
BseBI CCWGG 1 cut(s) 1374
BseDI CCNNGG 6 cut(s) 8, 347, 607, 732, 961, 1749
BseGI GGATG 5 cut(s) 493, 907, 928, 1018, 1728
BseJI GATNNNNATC 1 cut(s) 1798
BseLI CCNNNNNNNGG 4 cut(s) 172, 739, 1477, 1832
BseMI GCAATG 2 cut(s) 511, 1602
BseMII CTCAG 4 cut(s) 272, 444, 1301, 1508
BseNI ACTGG 1 cut(s) 1313
BseRI GAGGAG 2 cut(s) 17, 112
BseSI GKGCMC 2 cut(s) 517, 525
BseXI GCAGC 1 cut(s) 1645
BseYI CCCAGC 2 cut(s) 525, 1345
Bsh1236I CGCG 4 cut(s) 65, 185, 235, 1804
Bsh1285I CGRYCG 2 cut(s) 157, 1213
BshFI GGCC 2 cut(s) 606, 1292
BshTI ACCGGT 1 cut(s) 560
BsiEI CGRYCG 2 cut(s) 157, 1213
BsiHKAI GWGCWC 2 cut(s) 464, 517
BsiHKCI CYCGRG 1 cut(s) 1088
BsiSI CCGG 3 cut(s) 139, 561, 734
BslFI GGGAC 2 cut(s) 1080, 1789
BslI CCNNNNNNNGG 4 cut(s) 172, 739, 1477, 1832
BsmAI GTCTC 2 cut(s) 167, 1089
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 2 cut(s) 1080, 1789
BsmI GAATGC 1 cut(s) 1288
BsnI GGCC 2 cut(s) 606, 1292
BsoBI CYCGRG 1 cut(s) 1088
Bsp1286I GDGCHC 3 cut(s) 464, 517, 525
Bsp143I GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
Bsp1720I GCTNAGC 2 cut(s) 453, 617
Bsp19I CCATGG 1 cut(s) 961
Bsp68I TCGCGA 1 cut(s) 1804
BspACI CCGC 7 cut(s) 78, 235, 254, 330, 1106, 1122, 1696
BspANI GGCC 2 cut(s) 606, 1292
BspCNI CTCAG 4 cut(s) 271, 445, 1300, 1507
BspFNI CGCG 4 cut(s) 65, 185, 235, 1804
BspHI TCATGA 1 cut(s) 1276
BspLI GGNNCC 5 cut(s) 6, 177, 197, 345, 1293
BspPI GGATC 2 cut(s) 97, 752
BspTI CTTAAG 1 cut(s) 1615
BsrDI GCAATG 2 cut(s) 511, 1602
BsrFI RCCGGY 2 cut(s) 138, 560
BsrI ACTGG 1 cut(s) 1313
BssAI RCCGGY 2 cut(s) 138, 560
BssECI CCNNGG 6 cut(s) 8, 347, 607, 732, 961, 1749
BssMI GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 347, 961
Bst2UI CCWGG 1 cut(s) 1374
Bst4CI ACNGT 6 cut(s) 155, 295, 320, 410, 862, 1083
Bst6I CTCTTC 1 cut(s) 1259
BstACI GRCGYC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 1615
BstBAI YACGTR 2 cut(s) 375, 1190
BstC8I GCNNGC 3 cut(s) 144, 328, 531
BstDEI CTNAG 5 cut(s) 258, 453, 617, 1287, 1494
BstDSI CCRYGG 2 cut(s) 607, 961
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 5 cut(s) 493, 907, 928, 1018, 1728
BstFNI CGCG 4 cut(s) 65, 185, 235, 1804
BstH2I RGCGCY 2 cut(s) 448, 1615
BstHHI GCGC 4 cut(s) 65, 187, 447, 1614
BstKTI GATC 9 cut(s) 88, 105, 173, 208, 568, 760, 1213, 1369, 1802
BstMAI GTCTC 2 cut(s) 167, 1089
BstMBI GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
BstMCI CGRYCG 2 cut(s) 157, 1213
BstMWI GCNNNNNNNGC 6 cut(s) 77, 184, 193, 597, 815, 911
BstNI CCWGG 1 cut(s) 1374
BstNSI RCATGY 1 cut(s) 806
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 732, 1372
BstSLI GKGCMC 2 cut(s) 517, 525
BstSNI TACGTA 1 cut(s) 1190
BstUI CGCG 4 cut(s) 65, 185, 235, 1804
BstV1I GCAGC 1 cut(s) 1645
BstXI CCANNNNNNTGG 1 cut(s) 1649
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 606, 1292
BtgI CCRYGG 2 cut(s) 607, 961
BtgZI GCGATG 1 cut(s) 1324
BtsCI GGATG 5 cut(s) 493, 907, 928, 1018, 1728
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 475, 1079
BtuMI TCGCGA 1 cut(s) 1804
Cac8I GCNNGC 3 cut(s) 144, 328, 531
CaiI CAGNNNCTG 1 cut(s) 1004
CciI TCATGA 1 cut(s) 1276
CfoI GCGC 4 cut(s) 65, 187, 447, 1614
Cfr10I RCCGGY 2 cut(s) 138, 560
Cfr13I GGNCC 6 cut(s) 22, 343, 604, 628, 965, 1291
CseI GACGC 3 cut(s) 149, 241, 610
Csp6I GTAC 5 cut(s) 223, 291, 376, 1187, 1556
CspAI ACCGGT 1 cut(s) 560
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviQI GTAC 5 cut(s) 223, 291, 376, 1187, 1556
DdeI CTNAG 5 cut(s) 258, 453, 617, 1287, 1494
DpnI GATC 9 cut(s) 87, 104, 172, 207, 567, 759, 1212, 1368, 1801
DpnII GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
DraI TTTAAA 1 cut(s) 1272
Eam1104I CTCTTC 1 cut(s) 1259
EarI CTCTTC 1 cut(s) 1259
Ecl136II GAGCTC 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 1190
Eco130I CCWWGG 2 cut(s) 347, 961
Eco24I GRGCYC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 988
Eco47I GGWCC 4 cut(s) 22, 343, 628, 965
Eco53kI GAGCTC 1 cut(s) 462
Eco57I CTGAAG 2 cut(s) 812, 1853
Eco88I CYCGRG 1 cut(s) 1088
Eco91I GGTNACC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 462
EcoO109I RGGNCCY 2 cut(s) 343, 1291
EcoO65I GGTNACC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 1179
EcoRII CCWGG 1 cut(s) 1372
EcoRV GATATC 1 cut(s) 988
EcoT14I CCWWGG 2 cut(s) 347, 961
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 2 cut(s) 347, 961
Esp3I CGTCTC 1 cut(s) 167
FaqI GGGAC 2 cut(s) 1080, 1789
FauI CCCGC 1 cut(s) 1115
FauNDI CATATG 1 cut(s) 883
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 236, 1634
FokI GGATG 5 cut(s) 500, 914, 935, 1025, 1735
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 236, 1634
FspBI CTAG 3 cut(s) 348, 369, 713
GlaI GCGC 4 cut(s) 64, 186, 446, 1613
GluI GCNGC 2 cut(s) 236, 1634
GsaI CCCAGC 2 cut(s) 529, 1349
GsuI CTGGAG 2 cut(s) 149, 448
HaeII RGCGCY 2 cut(s) 448, 1615
HaeIII GGCC 2 cut(s) 606, 1292
HapII CCGG 3 cut(s) 139, 561, 734
HgaI GACGC 3 cut(s) 149, 241, 610
HhaI GCGC 4 cut(s) 65, 187, 447, 1614
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 4 cut(s) 63, 185, 445, 1612
HinP1I GCGC 4 cut(s) 63, 185, 445, 1612
HinfI GANTC 4 cut(s) 659, 1157, 1460, 1565
HpaII CCGG 3 cut(s) 139, 561, 734
HphI GGTGA 4 cut(s) 494, 575, 1009, 1388
Hpy166II GTNNAC 4 cut(s) 515, 1379, 1501, 1548
Hpy188I TCNGA 9 cut(s) 12, 99, 175, 261, 273, 316, 757, 1255, 1629
Hpy188III TCNNGA 8 cut(s) 166, 341, 968, 1088, 1277, 1334, 1524, 1803
Hpy8I GTNNAC 4 cut(s) 515, 1379, 1501, 1548
Hpy99I CGWCG 3 cut(s) 134, 155, 235
HpyAV CCTTC 7 cut(s) 116, 157, 787, 829, 928, 1002, 1108
HpyCH4III ACNGT 6 cut(s) 155, 295, 320, 410, 862, 1083
HpyCH4IV ACGT 3 cut(s) 374, 580, 1189
HpyCH4V TGCA 7 cut(s) 405, 432, 515, 887, 914, 1633, 1856
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 184, 193, 597, 815, 911
HpyF3I CTNAG 5 cut(s) 258, 453, 617, 1287, 1494
HpySE526I ACGT 3 cut(s) 374, 580, 1189
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 4 cut(s) 63, 185, 445, 1612
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
LmnI GCTCC 6 cut(s) 10, 175, 201, 467, 1336, 1708
Lsp1109I GCAGC 1 cut(s) 1645
LweI GCATC 4 cut(s) 892, 913, 1401, 1620
MaeI CTAG 3 cut(s) 348, 369, 713
MaeII ACGT 3 cut(s) 374, 580, 1189
MaeIII GTNAC 5 cut(s) 295, 332, 410, 1015, 1201
MalI GATC 9 cut(s) 87, 104, 172, 207, 567, 759, 1212, 1368, 1801
MboI GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
MboII GAAGA 3 cut(s) 1276, 1290, 1361
MfeI CAATTG 2 cut(s) 400, 1246
MhlI GDGCHC 3 cut(s) 464, 517, 525
MlyI GAGTC 1 cut(s) 1469
MmeI TCCRAC 1 cut(s) 1714
Mph1103I ATGCAT 1 cut(s) 889
MseI TTAA 7 cut(s) 723, 827, 918, 1271, 1542, 1616, 1878
MslI CAYNNNNRTG 2 cut(s) 302, 1281
MspA1I CMGCKG 2 cut(s) 1349, 1663
MspCI CTTAAG 1 cut(s) 1615
MspI CCGG 3 cut(s) 139, 561, 734
MspR9I CCNGG 2 cut(s) 734, 1374
MunI CAATTG 2 cut(s) 400, 1246
Mva1269I GAATGC 1 cut(s) 1288
MvaI CCWGG 1 cut(s) 1374
MvnI CGCG 4 cut(s) 65, 185, 235, 1804
MwoI GCNNNNNNNGC 6 cut(s) 77, 184, 193, 597, 815, 911
NciI CCSGG 1 cut(s) 734
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 1 cut(s) 883
NdeII GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
NlaIV GGNNCC 5 cut(s) 6, 177, 197, 345, 1293
NmuCI GTSAC 4 cut(s) 295, 410, 1015, 1201
NruI TCGCGA 1 cut(s) 1804
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 806
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 1 cut(s) 1276
PciI ACATGT 1 cut(s) 802
PctI GAATGC 1 cut(s) 1288
PfeI GAWTC 3 cut(s) 659, 1157, 1565
PflMI CCANNNNNTGG 1 cut(s) 1477
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 2 cut(s) 237, 1635
Ple19I CGATCG 1 cut(s) 1213
PleI GAGTC 1 cut(s) 1468
PpsI GAGTC 1 cut(s) 1468
Ppu21I YACGTR 2 cut(s) 375, 1190
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 802
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 1372
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 2 cut(s) 525, 1345
PspGI CCWGG 1 cut(s) 1372
PspN4I GGNNCC 5 cut(s) 6, 177, 197, 345, 1293
PspPI GGNCC 6 cut(s) 22, 343, 604, 628, 965, 1291
PspPPI RGGWCCY 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 1004
PvuI CGATCG 1 cut(s) 1213
PvuII CAGCTG 2 cut(s) 1349, 1663
RruI TCGCGA 1 cut(s) 1804
RsaI GTAC 5 cut(s) 224, 292, 377, 1188, 1557
RsaNI GTAC 5 cut(s) 223, 291, 376, 1187, 1556
RseI CAYNNNNRTG 2 cut(s) 302, 1281
SacI GAGCTC 1 cut(s) 464
SaqAI TTAA 7 cut(s) 723, 827, 918, 1271, 1542, 1616, 1878
SatI GCNGC 2 cut(s) 236, 1634
Sau3AI GATC 9 cut(s) 85, 102, 170, 205, 565, 757, 1210, 1366, 1799
Sau96I GGNCC 6 cut(s) 22, 343, 604, 628, 965, 1291
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 1469
ScrFI CCNGG 2 cut(s) 734, 1374
SduI GDGCHC 3 cut(s) 464, 517, 525
SfaNI GCATC 4 cut(s) 892, 913, 1401, 1620
SgrAI CRCCGGYG 1 cut(s) 138
SinI GGWCC 4 cut(s) 22, 343, 628, 965
SmiMI CAYNNNNRTG 2 cut(s) 302, 1281
SmlI CTYRAG 2 cut(s) 1504, 1615
SmoI CTYRAG 2 cut(s) 1504, 1615
SnaBI TACGTA 1 cut(s) 1190
SsiI CCGC 7 cut(s) 78, 235, 254, 330, 1106, 1122, 1696
SspI AATATT 2 cut(s) 553, 784
SspMI CTAG 3 cut(s) 348, 369, 713
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 732, 1372
StyI CCWWGG 2 cut(s) 347, 961
TaaI ACNGT 6 cut(s) 155, 295, 320, 410, 862, 1083
TaiI ACGT 3 cut(s) 377, 583, 1192
TaqI TCGA 3 cut(s) 150, 1213, 1404
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 3 cut(s) 659, 1157, 1565
Tru1I TTAA 7 cut(s) 723, 827, 918, 1271, 1542, 1616, 1878
Tru9I TTAA 7 cut(s) 723, 827, 918, 1271, 1542, 1616, 1878
TscAI CASTG 2 cut(s) 475, 1086
TseFI GTSAC 4 cut(s) 295, 410, 1015, 1201
TseI GCWGC 1 cut(s) 1633
Tsp45I GTSAC 4 cut(s) 295, 410, 1015, 1201
TspDTI ATGAA 7 cut(s) 651, 657, 861, 947, 1448, 1578, 1613
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 475, 1086
Van91I CCANNNNNTGG 1 cut(s) 1477
Vha464I CTTAAG 1 cut(s) 1615
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 4 cut(s) 22, 343, 628, 965
XapI RAATTY 4 cut(s) 1073, 1140, 1179, 1646
XceI RCATGY 1 cut(s) 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmaJI CCTAGG 1 cut(s) 347
XspI CTAG 3 cut(s) 348, 369, 713
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.