ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 32 - 155 | 2.3e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 218, 388 |
| AfaI | GTAC | 2 cut(s) | 157, 477 |
| AgsI | TTSAA | 3 cut(s) | 53, 71, 398 |
| AjnI | CCWGG | 1 cut(s) | 83 |
| AluBI | AGCT | 2 cut(s) | 451, 482 |
| AluI | AGCT | 2 cut(s) | 451, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| AoxI | GGCC | 3 cut(s) | 228, 313, 503 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| AseI | ATTAAT | 1 cut(s) | 167 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 1 cut(s) | 302 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 227 |
| BccI | CCATC | 2 cut(s) | 92, 330 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BciT130I | CCWGG | 1 cut(s) | 85 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 511 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 85 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 1 cut(s) | 515 |
| BmrFI | CCNGG | 1 cut(s) | 85 |
| BmsI | GCATC | 2 cut(s) | 283, 358 |
| BsaJI | CCNNGG | 2 cut(s) | 83, 509 |
| Bse1I | ACTGG | 3 cut(s) | 9, 61, 194 |
| Bse3DI | GCAATG | 2 cut(s) | 20, 183 |
| BseBI | CCWGG | 1 cut(s) | 85 |
| BseDI | CCNNGG | 2 cut(s) | 83, 509 |
| BseGI | GGATG | 3 cut(s) | 128, 341, 373 |
| BseMI | GCAATG | 2 cut(s) | 20, 183 |
| BseNI | ACTGG | 3 cut(s) | 9, 61, 194 |
| BseRI | GAGGAG | 1 cut(s) | 372 |
| BseXI | GCAGC | 1 cut(s) | 227 |
| BseYI | CCCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| BshFI | GGCC | 3 cut(s) | 230, 315, 505 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsmI | GAATGC | 2 cut(s) | 260, 325 |
| BsnI | GGCC | 3 cut(s) | 230, 315, 505 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp143I | GATC | 1 cut(s) | 458 |
| BspACI | CCGC | 2 cut(s) | 218, 388 |
| BspANI | GGCC | 3 cut(s) | 230, 315, 505 |
| BspLI | GGNNCC | 1 cut(s) | 515 |
| BsrDI | GCAATG | 2 cut(s) | 20, 183 |
| BsrI | ACTGG | 3 cut(s) | 9, 61, 194 |
| BssECI | CCNNGG | 2 cut(s) | 83, 509 |
| BssMI | GATC | 1 cut(s) | 458 |
| BssT1I | CCWWGG | 1 cut(s) | 509 |
| Bst2UI | CCWGG | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 1 cut(s) | 66 |
| BstC8I | GCNNGC | 2 cut(s) | 240, 453 |
| BstF5I | GGATG | 3 cut(s) | 128, 341, 373 |
| BstKTI | GATC | 1 cut(s) | 461 |
| BstMBI | GATC | 1 cut(s) | 458 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 221, 461, 511 |
| BstNI | CCWGG | 1 cut(s) | 85 |
| BstNSI | RCATGY | 2 cut(s) | 242, 419 |
| BstSCI | CCNGG | 1 cut(s) | 83 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 1 cut(s) | 227 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BsuRI | GGCC | 3 cut(s) | 230, 315, 505 |
| BtsCI | GGATG | 3 cut(s) | 128, 341, 373 |
| Cac8I | GCNNGC | 2 cut(s) | 240, 453 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| Csp6I | GTAC | 2 cut(s) | 156, 476 |
| CviAII | CATG | 4 cut(s) | 38, 239, 416, 518 |
| CviQI | GTAC | 2 cut(s) | 156, 476 |
| DpnI | GATC | 1 cut(s) | 460 |
| DpnII | GATC | 1 cut(s) | 458 |
| Eco130I | CCWWGG | 1 cut(s) | 509 |
| EcoO109I | RGGNCCY | 1 cut(s) | 503 |
| EcoRII | CCWGG | 1 cut(s) | 83 |
| EcoT14I | CCWWGG | 1 cut(s) | 509 |
| EcoT22I | ATGCAT | 1 cut(s) | 244 |
| ErhI | CCWWGG | 1 cut(s) | 509 |
| FaeI | CATG | 4 cut(s) | 41, 242, 419, 521 |
| FaiI | YATR | 8 cut(s) | 39, 212, 240, 288, 386, 417, 485, 519 |
| FatI | CATG | 4 cut(s) | 37, 238, 415, 517 |
| FauI | CCCGC | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FokI | GGATG | 3 cut(s) | 135, 348, 380 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GluI | GCNGC | 1 cut(s) | 216 |
| GsaI | CCCAGC | 1 cut(s) | 137 |
| HaeIII | GGCC | 3 cut(s) | 230, 315, 505 |
| Hin1II | CATG | 4 cut(s) | 41, 242, 419, 521 |
| HincII | GTYRAC | 2 cut(s) | 62, 109 |
| HindII | GTYRAC | 2 cut(s) | 62, 109 |
| HphI | GGTGA | 1 cut(s) | 302 |
| Hpy166II | GTNNAC | 2 cut(s) | 62, 109 |
| Hpy188III | TCNNGA | 1 cut(s) | 333 |
| Hpy8I | GTNNAC | 2 cut(s) | 62, 109 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 25, 104, 176, 242, 296, 371, 492 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 221, 461, 511 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92II | CATG | 4 cut(s) | 41, 242, 419, 521 |
| Kzo9I | GATC | 1 cut(s) | 458 |
| LmnI | GCTCC | 2 cut(s) | 434, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 227 |
| LweI | GCATC | 2 cut(s) | 283, 358 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 1 cut(s) | 460 |
| MboI | GATC | 1 cut(s) | 458 |
| MboII | GAAGA | 1 cut(s) | 433 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 2 cut(s) | 164, 525 |
| MmeI | TCCRAC | 1 cut(s) | 456 |
| MnlI | CCTC | 4 cut(s) | 23, 214, 350, 516 |
| Mph1103I | ATGCAT | 1 cut(s) | 244 |
| MseI | TTAA | 6 cut(s) | 116, 149, 167, 204, 300, 524 |
| MslI | CAYNNNNRTG | 1 cut(s) | 42 |
| MspA1I | CMGCKG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 1 cut(s) | 85 |
| Mva1269I | GAATGC | 2 cut(s) | 260, 325 |
| MvaI | CCWGG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 221, 461, 511 |
| NdeII | GATC | 1 cut(s) | 458 |
| NlaIII | CATG | 4 cut(s) | 41, 242, 419, 521 |
| NlaIV | GGNNCC | 1 cut(s) | 515 |
| NsiI | ATGCAT | 1 cut(s) | 244 |
| NspI | RCATGY | 2 cut(s) | 242, 419 |
| PaeI | GCATGC | 1 cut(s) | 242 |
| PctI | GAATGC | 2 cut(s) | 260, 325 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| PshBI | ATTAAT | 1 cut(s) | 167 |
| Psp6I | CCWGG | 1 cut(s) | 83 |
| PspFI | CCCAGC | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 515 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| RsaI | GTAC | 2 cut(s) | 157, 477 |
| RsaNI | GTAC | 2 cut(s) | 156, 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 42 |
| SaqAI | TTAA | 6 cut(s) | 116, 149, 167, 204, 300, 524 |
| SatI | GCNGC | 1 cut(s) | 216 |
| Sau3AI | GATC | 1 cut(s) | 458 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| ScrFI | CCNGG | 1 cut(s) | 85 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SetI | ASST | 4 cut(s) | 114, 163, 453, 484 |
| SfaNI | GCATC | 2 cut(s) | 283, 358 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 42 |
| SphI | GCATGC | 1 cut(s) | 242 |
| Sse9I | AATT | 2 cut(s) | 164, 525 |
| SsiI | CCGC | 2 cut(s) | 218, 388 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 1 cut(s) | 83 |
| StyI | CCWWGG | 1 cut(s) | 509 |
| TaaI | ACNGT | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TasI | AATT | 2 cut(s) | 164, 525 |
| Tru1I | TTAA | 6 cut(s) | 116, 149, 167, 204, 300, 524 |
| Tru9I | TTAA | 6 cut(s) | 116, 149, 167, 204, 300, 524 |
| TseI | GCWGC | 1 cut(s) | 215 |
| VspI | ATTAAT | 1 cut(s) | 167 |
| XceI | RCATGY | 2 cut(s) | 242, 419 |
| XspI | CTAG | 1 cut(s) | 327 |
| Zsp2I | ATGCAT | 1 cut(s) | 244 |