Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 215 - 336 | 2e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 51 |
| Acc65I | GGTACC | 1 cut(s) | 944 |
| AccB1I | GGYRCC | 1 cut(s) | 944 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 721 |
| AccI | GTMKAC | 1 cut(s) | 843 |
| AccII | CGCG | 1 cut(s) | 70 |
| AciI | CCGC | 1 cut(s) | 942 |
| AcoI | YGGCCR | 1 cut(s) | 712 |
| AcsI | RAATTY | 6 cut(s) | 114, 184, 401, 442, 478, 871 |
| AcuI | CTGAAG | 1 cut(s) | 915 |
| AfaI | GTAC | 4 cut(s) | 607, 635, 904, 946 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 176, 496, 626, 721, 745, 746 |
| AjnI | CCWGG | 1 cut(s) | 608 |
| AluBI | AGCT | 7 cut(s) | 427, 463, 536, 656, 860, 989, 1001 |
| AluI | AGCT | 7 cut(s) | 427, 463, 536, 656, 860, 989, 1001 |
| Alw21I | GWGCWC | 1 cut(s) | 148 |
| Alw26I | GTCTC | 3 cut(s) | 246, 278, 1034 |
| AoxI | GGCC | 2 cut(s) | 712, 1049 |
| ApeKI | GCWGC | 2 cut(s) | 424, 563 |
| ApoI | RAATTY | 6 cut(s) | 114, 184, 401, 442, 478, 871 |
| AseI | ATTAAT | 1 cut(s) | 719 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 9, 304 |
| Asp718I | GGTACC | 1 cut(s) | 944 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AspS9I | GGNCC | 1 cut(s) | 1049 |
| AsuHPI | GGTGA | 1 cut(s) | 728 |
| AsuII | TTCGAA | 1 cut(s) | 288 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 894, 927 |
| BalI | TGGCCA | 1 cut(s) | 714 |
| BanI | GGYRCC | 1 cut(s) | 944 |
| Bbv12I | GWGCWC | 1 cut(s) | 148 |
| BbvI | GCAGC | 2 cut(s) | 436, 550 |
| BccI | CCATC | 7 cut(s) | 26, 81, 134, 167, 174, 273, 644 |
| BceAI | ACGGC | 1 cut(s) | 73 |
| BciT130I | CCWGG | 1 cut(s) | 610 |
| BcoDI | GTCTC | 3 cut(s) | 246, 278, 1034 |
| BfaI | CTAG | 2 cut(s) | 866, 1026 |
| BfmI | CTRYAG | 2 cut(s) | 27, 322 |
| BfuAI | ACCTGC | 1 cut(s) | 51 |
| BisI | GCNGC | 2 cut(s) | 425, 564 |
| BlsI | GCNGC | 2 cut(s) | 426, 565 |
| Bme1390I | CCNGG | 1 cut(s) | 610 |
| BmgT120I | GGNCC | 1 cut(s) | 1049 |
| BmiI | GGNNCC | 1 cut(s) | 946 |
| BmrFI | CCNGG | 1 cut(s) | 610 |
| BmsI | GCATC | 3 cut(s) | 26, 48, 81 |
| Bpu14I | TTCGAA | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 2 cut(s) | 454, 490 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 135, 165 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 176, 496, 626, 721, 745, 746 |
| BseBI | CCWGG | 1 cut(s) | 610 |
| BseDI | CCNNGG | 2 cut(s) | 454, 490 |
| BseGI | GGATG | 2 cut(s) | 41, 185 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 176, 496, 626, 721, 745, 746 |
| BseMII | CTCAG | 2 cut(s) | 289, 540 |
| BseRI | GAGGAG | 2 cut(s) | 193, 566 |
| BseXI | GCAGC | 2 cut(s) | 436, 550 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| Bsh1236I | CGCG | 1 cut(s) | 70 |
| Bsh1285I | CGRYCG | 1 cut(s) | 847 |
| BshFI | GGCC | 2 cut(s) | 714, 1051 |
| BshNI | GGYRCC | 1 cut(s) | 944 |
| BsiEI | CGRYCG | 1 cut(s) | 847 |
| BsiHKAI | GWGCWC | 1 cut(s) | 148 |
| BsiSI | CCGG | 1 cut(s) | 1052 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 176, 496, 626, 721, 745, 746 |
| BsmAI | GTCTC | 3 cut(s) | 246, 278, 1034 |
| BsnI | GGCC | 2 cut(s) | 714, 1051 |
| Bsp119I | TTCGAA | 1 cut(s) | 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 148 |
| Bsp143I | GATC | 3 cut(s) | 19, 157, 314 |
| Bsp19I | CCATGG | 2 cut(s) | 454, 490 |
| BspACI | CCGC | 1 cut(s) | 942 |
| BspANI | GGCC | 2 cut(s) | 714, 1051 |
| BspCNI | CTCAG | 2 cut(s) | 288, 541 |
| BspFNI | CGCG | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 946 |
| BspMI | ACCTGC | 1 cut(s) | 51 |
| BspT104I | TTCGAA | 1 cut(s) | 288 |
| BspT107I | GGYRCC | 1 cut(s) | 944 |
| BssECI | CCNNGG | 2 cut(s) | 454, 490 |
| BssMI | GATC | 3 cut(s) | 19, 157, 314 |
| BssT1I | CCWWGG | 2 cut(s) | 454, 490 |
| Bst2UI | CCWGG | 1 cut(s) | 610 |
| Bst4CI | ACNGT | 1 cut(s) | 848 |
| Bst6I | CTCTTC | 3 cut(s) | 348, 673, 891 |
| BstBI | TTCGAA | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 3 cut(s) | 862, 936, 940 |
| BstDEI | CTNAG | 3 cut(s) | 275, 549, 1002 |
| BstDSI | CCRYGG | 2 cut(s) | 454, 490 |
| BstF5I | GGATG | 2 cut(s) | 41, 185 |
| BstFNI | CGCG | 1 cut(s) | 70 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstKTI | GATC | 3 cut(s) | 22, 160, 317 |
| BstMAI | GTCTC | 3 cut(s) | 246, 278, 1034 |
| BstMBI | GATC | 3 cut(s) | 19, 157, 314 |
| BstMCI | CGRYCG | 1 cut(s) | 847 |
| BstNI | CCWGG | 1 cut(s) | 610 |
| BstNSI | RCATGY | 1 cut(s) | 938 |
| BstSCI | CCNGG | 1 cut(s) | 608 |
| BstSFI | CTRYAG | 2 cut(s) | 27, 322 |
| BstUI | CGCG | 1 cut(s) | 70 |
| BstV1I | GCAGC | 2 cut(s) | 436, 550 |
| BsuRI | GGCC | 2 cut(s) | 714, 1051 |
| BtgI | CCRYGG | 2 cut(s) | 454, 490 |
| BtsCI | GGATG | 2 cut(s) | 41, 185 |
| BtsIMutI | CAGTG | 1 cut(s) | 782 |
| BveI | ACCTGC | 1 cut(s) | 51 |
| Cac8I | GCNNGC | 3 cut(s) | 862, 936, 940 |
| CfoI | GCGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 1 cut(s) | 1049 |
| CseI | GACGC | 1 cut(s) | 76 |
| CsiI | ACCWGGT | 1 cut(s) | 608 |
| Csp6I | GTAC | 4 cut(s) | 606, 634, 903, 945 |
| CviAII | CATG | 7 cut(s) | 215, 455, 491, 931, 935, 982, 992 |
| CviQI | GTAC | 4 cut(s) | 606, 634, 903, 945 |
| DdeI | CTNAG | 3 cut(s) | 275, 549, 1002 |
| DpnI | GATC | 3 cut(s) | 21, 159, 316 |
| DpnII | GATC | 3 cut(s) | 19, 157, 314 |
| EaeI | YGGCCR | 1 cut(s) | 712 |
| Eam1104I | CTCTTC | 3 cut(s) | 348, 673, 891 |
| EarI | CTCTTC | 3 cut(s) | 348, 673, 891 |
| Eco130I | CCWWGG | 2 cut(s) | 454, 490 |
| Eco32I | GATATC | 2 cut(s) | 229, 835 |
| Eco57I | CTGAAG | 1 cut(s) | 915 |
| EcoRI | GAATTC | 1 cut(s) | 871 |
| EcoRII | CCWGG | 1 cut(s) | 608 |
| EcoRV | GATATC | 2 cut(s) | 229, 835 |
| EcoT14I | CCWWGG | 2 cut(s) | 454, 490 |
| EcoT22I | ATGCAT | 2 cut(s) | 41, 936 |
| ErhI | CCWWGG | 2 cut(s) | 454, 490 |
| FaeI | CATG | 7 cut(s) | 218, 458, 494, 934, 938, 985, 995 |
| FatI | CATG | 7 cut(s) | 214, 454, 490, 930, 934, 981, 991 |
| FblI | GTMKAC | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 2 cut(s) | 425, 564 |
| FokI | GGATG | 2 cut(s) | 48, 192 |
| Fsp4HI | GCNGC | 2 cut(s) | 425, 564 |
| FspBI | CTAG | 2 cut(s) | 866, 1026 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GluI | GCNGC | 2 cut(s) | 425, 564 |
| HaeIII | GGCC | 2 cut(s) | 714, 1051 |
| HapII | CCGG | 1 cut(s) | 1052 |
| HgaI | GACGC | 1 cut(s) | 76 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1II | CATG | 7 cut(s) | 218, 458, 494, 934, 938, 985, 995 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HincII | GTYRAC | 3 cut(s) | 66, 615, 844 |
| HindII | GTYRAC | 3 cut(s) | 66, 615, 844 |
| HinfI | GANTC | 4 cut(s) | 91, 121, 356, 925 |
| HpaII | CCGG | 1 cut(s) | 1052 |
| HphI | GGTGA | 1 cut(s) | 728 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 615, 844 |
| Hpy188I | TCNGA | 4 cut(s) | 278, 649, 702, 895 |
| Hpy188III | TCNNGA | 5 cut(s) | 137, 430, 466, 830, 922 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 615, 844 |
| HpyAV | CCTTC | 3 cut(s) | 111, 624, 1040 |
| HpyCH4III | ACNGT | 1 cut(s) | 848 |
| HpyCH4IV | ACGT | 1 cut(s) | 503 |
| HpyCH4V | TGCA | 6 cut(s) | 39, 507, 566, 623, 692, 934 |
| HpyF3I | CTNAG | 3 cut(s) | 275, 549, 1002 |
| HpySE526I | ACGT | 1 cut(s) | 503 |
| Hsp92II | CATG | 7 cut(s) | 218, 458, 494, 934, 938, 985, 995 |
| HspAI | GCGC | 1 cut(s) | 70 |
| KpnI | GGTACC | 1 cut(s) | 948 |
| Kzo9I | GATC | 3 cut(s) | 19, 157, 314 |
| LmnI | GCTCC | 5 cut(s) | 143, 171, 364, 653, 725 |
| Lsp1109I | GCAGC | 2 cut(s) | 436, 550 |
| LweI | GCATC | 3 cut(s) | 26, 48, 81 |
| MabI | ACCWGGT | 1 cut(s) | 608 |
| MaeI | CTAG | 2 cut(s) | 866, 1026 |
| MaeII | ACGT | 1 cut(s) | 503 |
| MaeIII | GTNAC | 4 cut(s) | 53, 499, 749, 977 |
| MalI | GATC | 3 cut(s) | 21, 159, 316 |
| MboI | GATC | 3 cut(s) | 19, 157, 314 |
| MboII | GAAGA | 5 cut(s) | 125, 270, 365, 690, 908 |
| MfeI | CAATTG | 1 cut(s) | 624 |
| MhlI | GDGCHC | 1 cut(s) | 148 |
| MlsI | TGGCCA | 1 cut(s) | 714 |
| MluNI | TGGCCA | 1 cut(s) | 714 |
| MlyI | GAGTC | 3 cut(s) | 130, 365, 919 |
| MnlI | CCTC | 8 cut(s) | 214, 255, 259, 544, 674, 837, 892, 1036 |
| Mox20I | TGGCCA | 1 cut(s) | 714 |
| Mph1103I | ATGCAT | 2 cut(s) | 41, 936 |
| MroXI | GAANNNNTTC | 2 cut(s) | 9, 304 |
| MscI | TGGCCA | 1 cut(s) | 714 |
| MseI | TTAA | 4 cut(s) | 194, 342, 641, 719 |
| Msp20I | TGGCCA | 1 cut(s) | 714 |
| MspI | CCGG | 1 cut(s) | 1052 |
| MspR9I | CCNGG | 1 cut(s) | 610 |
| MunI | CAATTG | 1 cut(s) | 624 |
| MvaI | CCWGG | 1 cut(s) | 610 |
| MvnI | CGCG | 1 cut(s) | 70 |
| NcoI | CCATGG | 2 cut(s) | 454, 490 |
| NdeII | GATC | 3 cut(s) | 19, 157, 314 |
| NlaIII | CATG | 7 cut(s) | 218, 458, 494, 934, 938, 985, 995 |
| NlaIV | GGNNCC | 1 cut(s) | 946 |
| NmuCI | GTSAC | 1 cut(s) | 749 |
| NsiI | ATGCAT | 2 cut(s) | 41, 936 |
| NspI | RCATGY | 1 cut(s) | 938 |
| NspV | TTCGAA | 1 cut(s) | 288 |
| PaeI | GCATGC | 1 cut(s) | 938 |
| PdmI | GAANNNNTTC | 2 cut(s) | 9, 304 |
| PfeI | GAWTC | 1 cut(s) | 91 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 721 |
| PkrI | GCNGC | 2 cut(s) | 426, 565 |
| PleI | GAGTC | 3 cut(s) | 129, 364, 919 |
| PpsI | GAGTC | 3 cut(s) | 129, 364, 919 |
| PshBI | ATTAAT | 1 cut(s) | 719 |
| Psp6I | CCWGG | 1 cut(s) | 608 |
| PspGI | CCWGG | 1 cut(s) | 608 |
| PspN4I | GGNNCC | 1 cut(s) | 946 |
| PspPI | GGNCC | 1 cut(s) | 1049 |
| RsaI | GTAC | 4 cut(s) | 607, 635, 904, 946 |
| RsaNI | GTAC | 4 cut(s) | 606, 634, 903, 945 |
| SalI | GTCGAC | 1 cut(s) | 842 |
| SaqAI | TTAA | 4 cut(s) | 194, 342, 641, 719 |
| SatI | GCNGC | 2 cut(s) | 425, 564 |
| Sau3AI | GATC | 3 cut(s) | 19, 157, 314 |
| Sau96I | GGNCC | 1 cut(s) | 1049 |
| SchI | GAGTC | 3 cut(s) | 130, 365, 919 |
| ScrFI | CCNGG | 1 cut(s) | 610 |
| SduI | GDGCHC | 1 cut(s) | 148 |
| SexAI | ACCWGGT | 1 cut(s) | 608 |
| SfaNI | GCATC | 3 cut(s) | 26, 48, 81 |
| SfcI | CTRYAG | 2 cut(s) | 27, 322 |
| SfuI | TTCGAA | 1 cut(s) | 288 |
| SphI | GCATGC | 1 cut(s) | 938 |
| SsiI | CCGC | 1 cut(s) | 942 |
| SspI | AATATT | 2 cut(s) | 10, 305 |
| SspMI | CTAG | 2 cut(s) | 866, 1026 |
| StyD4I | CCNGG | 1 cut(s) | 608 |
| StyI | CCWWGG | 2 cut(s) | 454, 490 |
| TaaI | ACNGT | 1 cut(s) | 848 |
| TaiI | ACGT | 1 cut(s) | 506 |
| TaqI | TCGA | 3 cut(s) | 288, 837, 843 |
| TfiI | GAWTC | 1 cut(s) | 91 |
| Tru1I | TTAA | 4 cut(s) | 194, 342, 641, 719 |
| Tru9I | TTAA | 4 cut(s) | 194, 342, 641, 719 |
| TscAI | CASTG | 1 cut(s) | 789 |
| TseFI | GTSAC | 1 cut(s) | 749 |
| TseI | GCWGC | 2 cut(s) | 424, 563 |
| Tsp45I | GTSAC | 1 cut(s) | 749 |
| TspDTI | ATGAA | 4 cut(s) | 234, 450, 486, 1032 |
| TspRI | CASTG | 1 cut(s) | 789 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 721 |
| VspI | ATTAAT | 1 cut(s) | 719 |
| XapI | RAATTY | 6 cut(s) | 114, 184, 401, 442, 478, 871 |
| XceI | RCATGY | 1 cut(s) | 938 |
| XmiI | GTMKAC | 1 cut(s) | 843 |
| XmnI | GAANNNNTTC | 2 cut(s) | 9, 304 |
| XspI | CTAG | 2 cut(s) | 866, 1026 |
| Zsp2I | ATGCAT | 2 cut(s) | 41, 936 |