ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 11 - 70 | 4.5e-08 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 89 |
| AfeI | AGCGCT | 1 cut(s) | 13 |
| AgsI | TTSAA | 1 cut(s) | 44 |
| AhlI | ACTAGT | 1 cut(s) | 23 |
| AluBI | AGCT | 1 cut(s) | 141 |
| AluI | AGCT | 1 cut(s) | 141 |
| Ama87I | CYCGRG | 1 cut(s) | 104 |
| Aor51HI | AGCGCT | 1 cut(s) | 13 |
| ApeKI | GCWGC | 2 cut(s) | 191, 206 |
| AspLEI | GCGC | 1 cut(s) | 14 |
| AspS9I | GGNCC | 1 cut(s) | 254 |
| AvaI | CYCGRG | 1 cut(s) | 104 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| BbvI | GCAGC | 2 cut(s) | 203, 218 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 180, 214 |
| BclI | TGATCA | 1 cut(s) | 72 |
| BcuI | ACTAGT | 1 cut(s) | 23 |
| BfaI | CTAG | 2 cut(s) | 24, 278 |
| BfoI | RGCGCY | 1 cut(s) | 15 |
| BisI | GCNGC | 2 cut(s) | 192, 207 |
| BlsI | GCNGC | 2 cut(s) | 193, 208 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmeT110I | CYCGRG | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 1 cut(s) | 254 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseXI | GCAGC | 2 cut(s) | 203, 218 |
| BseYI | CCCAGC | 2 cut(s) | 14, 240 |
| BsgI | GTGCAG | 1 cut(s) | 210 |
| BsiHKCI | CYCGRG | 1 cut(s) | 104 |
| BsoBI | CYCGRG | 1 cut(s) | 104 |
| Bsp143I | GATC | 1 cut(s) | 72 |
| BspACI | CCGC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BssMI | GATC | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 1 cut(s) | 258 |
| BstH2I | RGCGCY | 1 cut(s) | 15 |
| BstHHI | GCGC | 1 cut(s) | 14 |
| BstKTI | GATC | 1 cut(s) | 75 |
| BstMBI | GATC | 1 cut(s) | 72 |
| BstNSI | RCATGY | 1 cut(s) | 296 |
| BstV1I | GCAGC | 2 cut(s) | 203, 218 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 14 |
| Cfr13I | GGNCC | 1 cut(s) | 254 |
| CviAII | CATG | 1 cut(s) | 293 |
| CviJI | RGCY | 3 cut(s) | 141, 194, 240 |
| CviKI_1 | RGCY | 3 cut(s) | 141, 194, 240 |
| DdeI | CTNAG | 1 cut(s) | 258 |
| DpnI | GATC | 1 cut(s) | 74 |
| DpnII | GATC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| Eco47III | AGCGCT | 1 cut(s) | 13 |
| Eco88I | CYCGRG | 1 cut(s) | 104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 254 |
| FaeI | CATG | 1 cut(s) | 296 |
| FaiI | YATR | 4 cut(s) | 30, 211, 225, 294 |
| FatI | CATG | 1 cut(s) | 292 |
| FbaI | TGATCA | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 2 cut(s) | 192, 207 |
| Fsp4HI | GCNGC | 2 cut(s) | 192, 207 |
| FspBI | CTAG | 2 cut(s) | 24, 278 |
| GlaI | GCGC | 1 cut(s) | 13 |
| GluI | GCNGC | 2 cut(s) | 192, 207 |
| GsaI | CCCAGC | 2 cut(s) | 18, 244 |
| HaeII | RGCGCY | 1 cut(s) | 15 |
| HhaI | GCGC | 1 cut(s) | 14 |
| Hin1II | CATG | 1 cut(s) | 296 |
| Hin6I | GCGC | 1 cut(s) | 12 |
| HinP1I | GCGC | 1 cut(s) | 12 |
| HinfI | GANTC | 4 cut(s) | 50, 100, 287, 301 |
| Hpy188I | TCNGA | 1 cut(s) | 69 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 106 |
| HpyCH4IV | ACGT | 1 cut(s) | 213 |
| HpyCH4V | TGCA | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 258 |
| HpySE526I | ACGT | 1 cut(s) | 213 |
| Hsp92II | CATG | 1 cut(s) | 296 |
| HspAI | GCGC | 1 cut(s) | 12 |
| Ksp22I | TGATCA | 1 cut(s) | 72 |
| Kzo9I | GATC | 1 cut(s) | 72 |
| LpnPI | CCDG | 3 cut(s) | 132, 226, 270 |
| Lsp1109I | GCAGC | 2 cut(s) | 203, 218 |
| MaeI | CTAG | 2 cut(s) | 24, 278 |
| MaeII | ACGT | 1 cut(s) | 213 |
| MaeIII | GTNAC | 1 cut(s) | 295 |
| MalI | GATC | 1 cut(s) | 74 |
| MboI | GATC | 1 cut(s) | 72 |
| MluCI | AATT | 1 cut(s) | 44 |
| MnlI | CCTC | 2 cut(s) | 183, 277 |
| MseI | TTAA | 3 cut(s) | 219, 270, 310 |
| NdeII | GATC | 1 cut(s) | 72 |
| NlaIII | CATG | 1 cut(s) | 296 |
| NspI | RCATGY | 1 cut(s) | 296 |
| PaeR7I | CTCGAG | 1 cut(s) | 104 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 296 |
| PfeI | GAWTC | 4 cut(s) | 50, 100, 287, 301 |
| PkrI | GCNGC | 2 cut(s) | 193, 208 |
| PpuMI | RGGWCCY | 1 cut(s) | 254 |
| Psp5II | RGGWCCY | 1 cut(s) | 254 |
| PspFI | CCCAGC | 2 cut(s) | 14, 240 |
| PspPI | GGNCC | 1 cut(s) | 254 |
| PspPPI | RGGWCCY | 1 cut(s) | 254 |
| SaqAI | TTAA | 3 cut(s) | 219, 270, 310 |
| SatI | GCNGC | 2 cut(s) | 192, 207 |
| Sau3AI | GATC | 1 cut(s) | 72 |
| Sau96I | GGNCC | 1 cut(s) | 254 |
| SetI | ASST | 4 cut(s) | 35, 143, 216, 259 |
| Sfr274I | CTCGAG | 1 cut(s) | 104 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SlaI | CTCGAG | 1 cut(s) | 104 |
| SmlI | CTYRAG | 1 cut(s) | 104 |
| SmoI | CTYRAG | 1 cut(s) | 104 |
| SpeI | ACTAGT | 1 cut(s) | 23 |
| Sse9I | AATT | 1 cut(s) | 44 |
| SsiI | CCGC | 1 cut(s) | 89 |
| SspI | AATATT | 1 cut(s) | 274 |
| SspMI | CTAG | 2 cut(s) | 24, 278 |
| TaiI | ACGT | 1 cut(s) | 216 |
| TaqI | TCGA | 2 cut(s) | 105, 200 |
| TasI | AATT | 1 cut(s) | 44 |
| TfiI | GAWTC | 4 cut(s) | 50, 100, 287, 301 |
| Tru1I | TTAA | 3 cut(s) | 219, 270, 310 |
| Tru9I | TTAA | 3 cut(s) | 219, 270, 310 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 2 cut(s) | 191, 206 |
| TspRI | CASTG | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 296 |
| XhoI | CTCGAG | 1 cut(s) | 104 |
| XspI | CTAG | 2 cut(s) | 24, 278 |