ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 109 | 1.6e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 85 |
| AclWI | GGATC | 1 cut(s) | 210 |
| AfaI | GTAC | 2 cut(s) | 119, 225 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 2 cut(s) | 98, 344 |
| AluI | AGCT | 2 cut(s) | 98, 344 |
| Alw26I | GTCTC | 2 cut(s) | 196, 271 |
| AlwI | GGATC | 1 cut(s) | 210 |
| ApeKI | GCWGC | 1 cut(s) | 80 |
| AspLEI | GCGC | 1 cut(s) | 307 |
| AspS9I | GGNCC | 1 cut(s) | 365 |
| AsuHPI | GGTGA | 1 cut(s) | 170 |
| AvaII | GGWCC | 1 cut(s) | 365 |
| BbvI | GCAGC | 1 cut(s) | 67 |
| BccI | CCATC | 2 cut(s) | 31, 192 |
| BcoDI | GTCTC | 2 cut(s) | 196, 271 |
| BfaI | CTAG | 1 cut(s) | 227 |
| BfmI | CTRYAG | 1 cut(s) | 121 |
| BfuAI | ACCTGC | 1 cut(s) | 85 |
| BglII | AGATCT | 1 cut(s) | 320 |
| BisI | GCNGC | 1 cut(s) | 81 |
| BlsI | GCNGC | 1 cut(s) | 82 |
| BmcAI | AGTACT | 2 cut(s) | 119, 225 |
| Bme18I | GGWCC | 1 cut(s) | 365 |
| BmgT120I | GGNCC | 1 cut(s) | 365 |
| BmiI | GGNNCC | 1 cut(s) | 377 |
| BmsI | GCATC | 3 cut(s) | 151, 220, 382 |
| BsaI | GGTCTC | 1 cut(s) | 271 |
| BsaJI | CCNNGG | 1 cut(s) | 371 |
| Bse118I | RCCGGY | 1 cut(s) | 61 |
| BseDI | CCNNGG | 1 cut(s) | 371 |
| BseGI | GGATG | 1 cut(s) | 203 |
| BseRI | GAGGAG | 1 cut(s) | 234 |
| BseXI | GCAGC | 1 cut(s) | 67 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| BsiSI | CCGG | 1 cut(s) | 62 |
| BsmAI | GTCTC | 2 cut(s) | 196, 271 |
| Bso31I | GGTCTC | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 202, 320 |
| BspLI | GGNNCC | 1 cut(s) | 377 |
| BspMI | ACCTGC | 1 cut(s) | 85 |
| BspPI | GGATC | 1 cut(s) | 210 |
| BspTNI | GGTCTC | 1 cut(s) | 271 |
| BsrFI | RCCGGY | 1 cut(s) | 61 |
| BssAI | RCCGGY | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 371 |
| BssMI | GATC | 2 cut(s) | 202, 320 |
| BssT1I | CCWWGG | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 2 cut(s) | 33, 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 342 |
| BstDEI | CTNAG | 1 cut(s) | 206 |
| BstF5I | GGATG | 1 cut(s) | 203 |
| BstHHI | GCGC | 1 cut(s) | 307 |
| BstKTI | GATC | 2 cut(s) | 205, 323 |
| BstMAI | GTCTC | 2 cut(s) | 196, 271 |
| BstMBI | GATC | 2 cut(s) | 202, 320 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| BstSFI | CTRYAG | 1 cut(s) | 121 |
| BstV1I | GCAGC | 1 cut(s) | 67 |
| BstX2I | RGATCY | 2 cut(s) | 202, 320 |
| BstYI | RGATCY | 2 cut(s) | 202, 320 |
| BtsCI | GGATG | 1 cut(s) | 203 |
| BtsI | GCAGTG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 1 cut(s) | 15 |
| BveI | ACCTGC | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 342 |
| CfoI | GCGC | 1 cut(s) | 307 |
| Cfr10I | RCCGGY | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 1 cut(s) | 365 |
| Csp6I | GTAC | 2 cut(s) | 118, 224 |
| CviAII | CATG | 3 cut(s) | 107, 262, 380 |
| CviJI | RGCY | 4 cut(s) | 65, 98, 344, 376 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 98, 344, 376 |
| CviQI | GTAC | 2 cut(s) | 118, 224 |
| DdeI | CTNAG | 1 cut(s) | 206 |
| DpnI | GATC | 2 cut(s) | 204, 322 |
| DpnII | GATC | 2 cut(s) | 202, 320 |
| Eco130I | CCWWGG | 1 cut(s) | 371 |
| Eco31I | GGTCTC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 1 cut(s) | 365 |
| EcoO109I | RGGNCCY | 1 cut(s) | 365 |
| EcoT14I | CCWWGG | 1 cut(s) | 371 |
| ErhI | CCWWGG | 1 cut(s) | 371 |
| FaeI | CATG | 3 cut(s) | 110, 265, 383 |
| FaiI | YATR | 5 cut(s) | 108, 156, 263, 347, 381 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 310, 342 |
| FatI | CATG | 3 cut(s) | 106, 261, 379 |
| Fnu4HI | GCNGC | 1 cut(s) | 81 |
| FokI | GGATG | 1 cut(s) | 210 |
| Fsp4HI | GCNGC | 1 cut(s) | 81 |
| FspBI | CTAG | 1 cut(s) | 227 |
| GlaI | GCGC | 1 cut(s) | 306 |
| GluI | GCNGC | 1 cut(s) | 81 |
| HapII | CCGG | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 307 |
| Hin1II | CATG | 3 cut(s) | 110, 265, 383 |
| Hin6I | GCGC | 1 cut(s) | 305 |
| HinP1I | GCGC | 1 cut(s) | 305 |
| HpaII | CCGG | 1 cut(s) | 62 |
| HphI | GGTGA | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 1 cut(s) | 195 |
| HpyAV | CCTTC | 1 cut(s) | 356 |
| HpyCH4III | ACNGT | 2 cut(s) | 33, 122 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 83, 233, 340, 354 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| HpyF3I | CTNAG | 1 cut(s) | 206 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 3 cut(s) | 110, 265, 383 |
| HspAI | GCGC | 1 cut(s) | 305 |
| KroI | GCCGGC | 1 cut(s) | 61 |
| KroNI | GCCGGC | 1 cut(s) | 63 |
| Kzo9I | GATC | 2 cut(s) | 202, 320 |
| LmnI | GCTCC | 1 cut(s) | 381 |
| LpnPI | CCDG | 3 cut(s) | 75, 90, 180 |
| Lsp1109I | GCAGC | 1 cut(s) | 67 |
| LweI | GCATC | 3 cut(s) | 151, 220, 382 |
| MaeI | CTAG | 1 cut(s) | 227 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MalI | GATC | 2 cut(s) | 204, 322 |
| MboI | GATC | 2 cut(s) | 202, 320 |
| MboII | GAAGA | 2 cut(s) | 286, 295 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MflI | RGATCY | 2 cut(s) | 202, 320 |
| MluCI | AATT | 4 cut(s) | 84, 128, 311, 387 |
| MnlI | CCTC | 4 cut(s) | 66, 82, 212, 378 |
| MroNI | GCCGGC | 1 cut(s) | 61 |
| MseI | TTAA | 4 cut(s) | 72, 113, 177, 386 |
| MspI | CCGG | 1 cut(s) | 62 |
| MunI | CAATTG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| NaeI | GCCGGC | 1 cut(s) | 63 |
| NdeII | GATC | 2 cut(s) | 202, 320 |
| NgoMIV | GCCGGC | 1 cut(s) | 61 |
| NlaIII | CATG | 3 cut(s) | 110, 265, 383 |
| NlaIV | GGNNCC | 1 cut(s) | 377 |
| PdiI | GCCGGC | 1 cut(s) | 63 |
| PflFI | GACNNNGTC | 1 cut(s) | 263 |
| PkrI | GCNGC | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 1 cut(s) | 365 |
| Psp5II | RGGWCCY | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 1 cut(s) | 377 |
| PspPI | GGNCC | 1 cut(s) | 365 |
| PspPPI | RGGWCCY | 1 cut(s) | 365 |
| PsuI | RGATCY | 2 cut(s) | 202, 320 |
| PsyI | GACNNNGTC | 1 cut(s) | 263 |
| RsaI | GTAC | 2 cut(s) | 119, 225 |
| RsaNI | GTAC | 2 cut(s) | 118, 224 |
| SaqAI | TTAA | 4 cut(s) | 72, 113, 177, 386 |
| SatI | GCNGC | 1 cut(s) | 81 |
| Sau3AI | GATC | 2 cut(s) | 202, 320 |
| Sau96I | GGNCC | 1 cut(s) | 365 |
| ScaI | AGTACT | 2 cut(s) | 119, 225 |
| SetI | ASST | 5 cut(s) | 79, 100, 147, 346, 370 |
| SfaNI | GCATC | 3 cut(s) | 151, 220, 382 |
| SfcI | CTRYAG | 1 cut(s) | 121 |
| SinI | GGWCC | 1 cut(s) | 365 |
| Sse9I | AATT | 4 cut(s) | 84, 128, 311, 387 |
| SspMI | CTAG | 1 cut(s) | 227 |
| StyI | CCWWGG | 1 cut(s) | 371 |
| TaaI | ACNGT | 2 cut(s) | 33, 122 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TasI | AATT | 4 cut(s) | 84, 128, 311, 387 |
| TatI | WGTACW | 2 cut(s) | 117, 223 |
| Tru1I | TTAA | 4 cut(s) | 72, 113, 177, 386 |
| Tru9I | TTAA | 4 cut(s) | 72, 113, 177, 386 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TseI | GCWGC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 1 cut(s) | 375 |
| TspRI | CASTG | 1 cut(s) | 15 |
| Tth111I | GACNNNGTC | 1 cut(s) | 263 |
| VpaK11BI | GGWCC | 1 cut(s) | 365 |
| XspI | CTAG | 1 cut(s) | 227 |
| ZrmI | AGTACT | 2 cut(s) | 119, 225 |