Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 95 - 216 | 1e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 100, 431, 497 |
| AclWI | GGATC | 1 cut(s) | 331 |
| AcsI | RAATTY | 1 cut(s) | 644 |
| AfaI | GTAC | 2 cut(s) | 275, 391 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 266, 469 |
| AgsI | TTSAA | 2 cut(s) | 554, 604 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AluBI | AGCT | 4 cut(s) | 176, 358, 368, 641 |
| AluI | AGCT | 4 cut(s) | 176, 358, 368, 641 |
| Alw26I | GTCTC | 1 cut(s) | 520 |
| AlwI | GGATC | 1 cut(s) | 331 |
| Ama87I | CYCGRG | 1 cut(s) | 609 |
| AoxI | GGCC | 1 cut(s) | 689 |
| ApeKI | GCWGC | 2 cut(s) | 59, 223 |
| ApoI | RAATTY | 1 cut(s) | 644 |
| AseI | ATTAAT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 671 |
| AspS9I | GGNCC | 1 cut(s) | 689 |
| AsuC2I | CCSGG | 2 cut(s) | 610, 611 |
| AsuHPI | GGTGA | 3 cut(s) | 203, 589, 724 |
| AvaI | CYCGRG | 1 cut(s) | 609 |
| BbvI | GCAGC | 2 cut(s) | 46, 210 |
| BccI | CCATC | 3 cut(s) | 67, 132, 284 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BcnI | CCSGG | 2 cut(s) | 610, 611 |
| BcoDI | GTCTC | 1 cut(s) | 520 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 697 |
| BisI | GCNGC | 3 cut(s) | 60, 101, 224 |
| BlsI | GCNGC | 3 cut(s) | 61, 102, 225 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 610, 611 |
| BmeT110I | CYCGRG | 1 cut(s) | 609 |
| BmgT120I | GGNCC | 1 cut(s) | 689 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 3 cut(s) | 156, 610, 611 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| BpuMI | CCSGG | 2 cut(s) | 610, 611 |
| BsaJI | CCNNGG | 2 cut(s) | 608, 609 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 382, 412, 728 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 266, 469 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 2 cut(s) | 608, 609 |
| BseGI | GGATG | 2 cut(s) | 5, 114 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 266, 469 |
| BseXI | GCAGC | 2 cut(s) | 46, 210 |
| BseYI | CCCAGC | 1 cut(s) | 533 |
| BsgI | GTGCAG | 2 cut(s) | 315, 472 |
| BshFI | GGCC | 1 cut(s) | 691 |
| BsiHKCI | CYCGRG | 1 cut(s) | 609 |
| BsiSI | CCGG | 1 cut(s) | 610 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 266, 469 |
| BsmAI | GTCTC | 1 cut(s) | 520 |
| BsmI | GAATGC | 1 cut(s) | 620 |
| BsnI | GGCC | 1 cut(s) | 691 |
| BsoBI | CYCGRG | 1 cut(s) | 609 |
| Bsp1407I | TGTACA | 1 cut(s) | 273 |
| Bsp143I | GATC | 1 cut(s) | 336 |
| BspACI | CCGC | 3 cut(s) | 100, 431, 497 |
| BspANI | GGCC | 1 cut(s) | 691 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspPI | GGATC | 1 cut(s) | 331 |
| BsrGI | TGTACA | 1 cut(s) | 273 |
| BssECI | CCNNGG | 2 cut(s) | 608, 609 |
| BssMI | GATC | 1 cut(s) | 336 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst6I | CTCTTC | 2 cut(s) | 313, 552 |
| BstAUI | TGTACA | 1 cut(s) | 273 |
| BstDEI | CTNAG | 1 cut(s) | 547 |
| BstF5I | GGATG | 2 cut(s) | 5, 114 |
| BstKTI | GATC | 1 cut(s) | 339 |
| BstMAI | GTCTC | 1 cut(s) | 520 |
| BstMBI | GATC | 1 cut(s) | 336 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 428, 697 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstSCI | CCNGG | 3 cut(s) | 154, 608, 609 |
| BstV1I | GCAGC | 2 cut(s) | 46, 210 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 691 |
| BtsCI | GGATG | 2 cut(s) | 5, 114 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 1 cut(s) | 689 |
| Cfr9I | CCCGGG | 1 cut(s) | 609 |
| CseI | GACGC | 1 cut(s) | 491 |
| Csp6I | GTAC | 2 cut(s) | 274, 390 |
| CviAII | CATG | 6 cut(s) | 14, 131, 261, 326, 632, 686 |
| CviQI | GTAC | 2 cut(s) | 274, 390 |
| DdeI | CTNAG | 1 cut(s) | 547 |
| DpnI | GATC | 1 cut(s) | 338 |
| DpnII | GATC | 1 cut(s) | 336 |
| Eam1104I | CTCTTC | 2 cut(s) | 313, 552 |
| EarI | CTCTTC | 2 cut(s) | 313, 552 |
| Eco88I | CYCGRG | 1 cut(s) | 609 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| FaeI | CATG | 6 cut(s) | 17, 134, 264, 329, 635, 689 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 342, 374 |
| FatI | CATG | 6 cut(s) | 13, 130, 260, 325, 631, 685 |
| FauI | CCCGC | 1 cut(s) | 424 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 101, 224 |
| FokI | GGATG | 1 cut(s) | 121 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 101, 224 |
| GluI | GCNGC | 3 cut(s) | 60, 101, 224 |
| GsaI | CCCAGC | 1 cut(s) | 537 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HaeIII | GGCC | 1 cut(s) | 691 |
| HapII | CCGG | 1 cut(s) | 610 |
| HgaI | GACGC | 1 cut(s) | 491 |
| Hin1II | CATG | 6 cut(s) | 17, 134, 264, 329, 635, 689 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 2 cut(s) | 301, 722 |
| HpaII | CCGG | 1 cut(s) | 610 |
| HphI | GGTGA | 3 cut(s) | 203, 589, 724 |
| Hpy166II | GTNNAC | 1 cut(s) | 274 |
| Hpy188I | TCNGA | 4 cut(s) | 341, 520, 727, 748 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 1 cut(s) | 274 |
| HpyAV | CCTTC | 4 cut(s) | 19, 260, 473, 610 |
| HpyCH4V | TGCA | 7 cut(s) | 226, 296, 479, 489, 571, 587, 618 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 428, 697 |
| HpyF3I | CTNAG | 1 cut(s) | 547 |
| Hsp92II | CATG | 6 cut(s) | 17, 134, 264, 329, 635, 689 |
| Kzo9I | GATC | 1 cut(s) | 336 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LpnPI | CCDG | 6 cut(s) | 141, 168, 480, 519, 623, 705 |
| Lsp1109I | GCAGC | 2 cut(s) | 46, 210 |
| MaeIII | GTNAC | 4 cut(s) | 91, 406, 595, 734 |
| MalI | GATC | 1 cut(s) | 338 |
| MboI | GATC | 1 cut(s) | 336 |
| MboII | GAAGA | 5 cut(s) | 119, 327, 330, 566, 569 |
| MluCI | AATT | 6 cut(s) | 77, 138, 142, 247, 644, 707 |
| MnlI | CCTC | 5 cut(s) | 196, 267, 314, 487, 532 |
| MroXI | GAANNNNTTC | 1 cut(s) | 671 |
| MseI | TTAA | 5 cut(s) | 23, 141, 198, 306, 751 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MspI | CCGG | 1 cut(s) | 610 |
| MspR9I | CCNGG | 3 cut(s) | 156, 610, 611 |
| Mva1269I | GAATGC | 1 cut(s) | 620 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 428, 697 |
| NciI | CCSGG | 2 cut(s) | 610, 611 |
| NdeII | GATC | 1 cut(s) | 336 |
| NlaIII | CATG | 6 cut(s) | 17, 134, 264, 329, 635, 689 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmuCI | GTSAC | 1 cut(s) | 595 |
| PctI | GAATGC | 1 cut(s) | 620 |
| PdmI | GAANNNNTTC | 1 cut(s) | 671 |
| PfeI | GAWTC | 2 cut(s) | 301, 722 |
| PkrI | GCNGC | 3 cut(s) | 61, 102, 225 |
| PshBI | ATTAAT | 1 cut(s) | 141 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspFI | CCCAGC | 1 cut(s) | 533 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PspPI | GGNCC | 1 cut(s) | 689 |
| RsaI | GTAC | 2 cut(s) | 275, 391 |
| RsaNI | GTAC | 2 cut(s) | 274, 390 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SaqAI | TTAA | 5 cut(s) | 23, 141, 198, 306, 751 |
| SatI | GCNGC | 3 cut(s) | 60, 101, 224 |
| Sau3AI | GATC | 1 cut(s) | 336 |
| Sau96I | GGNCC | 1 cut(s) | 689 |
| ScrFI | CCNGG | 3 cut(s) | 156, 610, 611 |
| SetI | ASST | 9 cut(s) | 178, 259, 271, 360, 370, 391, 602, 627, 643 |
| SmaI | CCCGGG | 1 cut(s) | 611 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sse9I | AATT | 6 cut(s) | 77, 138, 142, 247, 644, 707 |
| SsiI | CCGC | 3 cut(s) | 100, 431, 497 |
| StyD4I | CCNGG | 3 cut(s) | 154, 608, 609 |
| TasI | AATT | 6 cut(s) | 77, 138, 142, 247, 644, 707 |
| TatI | WGTACW | 1 cut(s) | 273 |
| TauI | GCSGC | 1 cut(s) | 103 |
| TfiI | GAWTC | 2 cut(s) | 301, 722 |
| Tru1I | TTAA | 5 cut(s) | 23, 141, 198, 306, 751 |
| Tru9I | TTAA | 5 cut(s) | 23, 141, 198, 306, 751 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TseFI | GTSAC | 1 cut(s) | 595 |
| TseI | GCWGC | 2 cut(s) | 59, 223 |
| Tsp45I | GTSAC | 1 cut(s) | 595 |
| TspDTI | ATGAA | 3 cut(s) | 119, 637, 672 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspMI | CCCGGG | 1 cut(s) | 609 |
| TspRI | CASTG | 1 cut(s) | 303 |
| VspI | ATTAAT | 1 cut(s) | 141 |
| XapI | RAATTY | 1 cut(s) | 644 |
| XmaI | CCCGGG | 1 cut(s) | 609 |
| XmnI | GAANNNNTTC | 1 cut(s) | 671 |