Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CPDase | PF07823 | 22 - 182 | 2.2e-09 | Cyclic phosphodiesterase-like protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 355 |
| AccIII | TCCGGA | 1 cut(s) | 126 |
| AciI | CCGC | 2 cut(s) | 65, 173 |
| AclWI | GGATC | 1 cut(s) | 414 |
| AcsI | RAATTY | 2 cut(s) | 134, 278 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 472, 506 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 130, 492 |
| AgeI | ACCGGT | 1 cut(s) | 57 |
| AgsI | TTSAA | 1 cut(s) | 190 |
| AluBI | AGCT | 2 cut(s) | 393, 480 |
| AluI | AGCT | 2 cut(s) | 393, 480 |
| Alw26I | GTCTC | 1 cut(s) | 263 |
| AlwI | GGATC | 1 cut(s) | 414 |
| Aor13HI | TCCGGA | 1 cut(s) | 126 |
| AoxI | GGCC | 4 cut(s) | 72, 120, 143, 201 |
| ApeKI | GCWGC | 1 cut(s) | 350 |
| ApoI | RAATTY | 2 cut(s) | 134, 278 |
| AsiGI | ACCGGT | 1 cut(s) | 57 |
| AspLEI | GCGC | 1 cut(s) | 355 |
| AspS9I | GGNCC | 3 cut(s) | 72, 121, 143 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 475 |
| AsuII | TTCGAA | 1 cut(s) | 519 |
| AxyI | CCTNAGG | 1 cut(s) | 147 |
| BanII | GRGCYC | 2 cut(s) | 159, 179 |
| BbvI | GCAGC | 1 cut(s) | 337 |
| BccI | CCATC | 2 cut(s) | 83, 541 |
| BcoDI | GTCTC | 1 cut(s) | 263 |
| BfaI | CTAG | 2 cut(s) | 273, 580 |
| BisI | GCNGC | 1 cut(s) | 351 |
| BlsI | GCNGC | 1 cut(s) | 352 |
| BmgT120I | GGNCC | 3 cut(s) | 72, 121, 143 |
| BmiI | GGNNCC | 1 cut(s) | 178 |
| Bpu14I | TTCGAA | 1 cut(s) | 519 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BsaWI | WCCGGW | 3 cut(s) | 57, 82, 126 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 130, 492 |
| Bse118I | RCCGGY | 1 cut(s) | 57 |
| Bse1I | ACTGG | 1 cut(s) | 343 |
| Bse21I | CCTNAGG | 1 cut(s) | 147 |
| BseAI | TCCGGA | 1 cut(s) | 126 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 130, 492 |
| BseMII | CTCAG | 2 cut(s) | 138, 210 |
| BseNI | ACTGG | 1 cut(s) | 343 |
| BseXI | GCAGC | 1 cut(s) | 337 |
| Bsh1236I | CGCG | 1 cut(s) | 355 |
| BshFI | GGCC | 4 cut(s) | 74, 122, 145, 203 |
| BshTI | ACCGGT | 1 cut(s) | 57 |
| BsiSI | CCGG | 3 cut(s) | 58, 83, 127 |
| BslFI | GGGAC | 1 cut(s) | 477 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 130, 492 |
| BsmAI | GTCTC | 1 cut(s) | 263 |
| BsmFI | GGGAC | 1 cut(s) | 477 |
| BsmI | GAATGC | 1 cut(s) | 563 |
| BsnI | GGCC | 4 cut(s) | 74, 122, 145, 203 |
| Bsp119I | TTCGAA | 1 cut(s) | 519 |
| Bsp1286I | GDGCHC | 2 cut(s) | 159, 179 |
| Bsp13I | TCCGGA | 1 cut(s) | 126 |
| Bsp1407I | TGTACA | 1 cut(s) | 504 |
| Bsp143I | GATC | 4 cut(s) | 43, 259, 316, 406 |
| BspACI | CCGC | 2 cut(s) | 65, 173 |
| BspANI | GGCC | 4 cut(s) | 74, 122, 145, 203 |
| BspCNI | CTCAG | 2 cut(s) | 139, 209 |
| BspEI | TCCGGA | 1 cut(s) | 126 |
| BspFNI | CGCG | 1 cut(s) | 355 |
| BspLI | GGNNCC | 1 cut(s) | 178 |
| BspPI | GGATC | 1 cut(s) | 414 |
| BspT104I | TTCGAA | 1 cut(s) | 519 |
| BsrFI | RCCGGY | 1 cut(s) | 57 |
| BsrGI | TGTACA | 1 cut(s) | 504 |
| BsrI | ACTGG | 1 cut(s) | 343 |
| BssAI | RCCGGY | 1 cut(s) | 57 |
| BssMI | GATC | 4 cut(s) | 43, 259, 316, 406 |
| Bst4CI | ACNGT | 2 cut(s) | 112, 169 |
| Bst6I | CTCTTC | 3 cut(s) | 191, 414, 443 |
| BstAUI | TGTACA | 1 cut(s) | 504 |
| BstBI | TTCGAA | 1 cut(s) | 519 |
| BstC8I | GCNNGC | 1 cut(s) | 175 |
| BstDEI | CTNAG | 2 cut(s) | 147, 196 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 128 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstFNI | CGCG | 1 cut(s) | 355 |
| BstHHI | GCGC | 1 cut(s) | 355 |
| BstKTI | GATC | 4 cut(s) | 46, 262, 319, 409 |
| BstMAI | GTCTC | 1 cut(s) | 263 |
| BstMBI | GATC | 4 cut(s) | 43, 259, 316, 406 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 71 |
| BstNSI | RCATGY | 1 cut(s) | 228 |
| BstUI | CGCG | 1 cut(s) | 355 |
| BstV1I | GCAGC | 1 cut(s) | 337 |
| BstX2I | RGATCY | 1 cut(s) | 406 |
| BstYI | RGATCY | 1 cut(s) | 406 |
| Bsu36I | CCTNAGG | 1 cut(s) | 147 |
| BsuRI | GGCC | 4 cut(s) | 74, 122, 145, 203 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 355 |
| Cfr10I | RCCGGY | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 3 cut(s) | 72, 121, 143 |
| Csp6I | GTAC | 2 cut(s) | 471, 505 |
| CspAI | ACCGGT | 1 cut(s) | 57 |
| CviAII | CATG | 1 cut(s) | 225 |
| CviJI | RGCY | 9 cut(s) | 74, 122, 145, 157, 177, 203, 350, 393, 480 |
| CviKI_1 | RGCY | 9 cut(s) | 74, 122, 145, 157, 177, 203, 350, 393, 480 |
| CviQI | GTAC | 2 cut(s) | 471, 505 |
| DdeI | CTNAG | 2 cut(s) | 147, 196 |
| DpnI | GATC | 4 cut(s) | 45, 261, 318, 408 |
| DpnII | GATC | 4 cut(s) | 43, 259, 316, 406 |
| Eam1104I | CTCTTC | 3 cut(s) | 191, 414, 443 |
| EarI | CTCTTC | 3 cut(s) | 191, 414, 443 |
| Eco24I | GRGCYC | 2 cut(s) | 159, 179 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| Eco81I | CCTNAGG | 1 cut(s) | 147 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoT38I | GRGCYC | 2 cut(s) | 159, 179 |
| FaeI | CATG | 1 cut(s) | 228 |
| FaiI | YATR | 7 cut(s) | 70, 226, 246, 359, 380, 402, 488 |
| FaqI | GGGAC | 1 cut(s) | 477 |
| FatI | CATG | 1 cut(s) | 224 |
| FauI | CCCGC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 1 cut(s) | 351 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 2 cut(s) | 159, 179 |
| Fsp4HI | GCNGC | 1 cut(s) | 351 |
| FspBI | CTAG | 2 cut(s) | 273, 580 |
| GlaI | GCGC | 1 cut(s) | 354 |
| GluI | GCNGC | 1 cut(s) | 351 |
| HaeIII | GGCC | 4 cut(s) | 74, 122, 145, 203 |
| HapII | CCGG | 3 cut(s) | 58, 83, 127 |
| HhaI | GCGC | 1 cut(s) | 355 |
| Hin1II | CATG | 1 cut(s) | 228 |
| Hin6I | GCGC | 1 cut(s) | 353 |
| HinP1I | GCGC | 1 cut(s) | 353 |
| HincII | GTYRAC | 2 cut(s) | 327, 514 |
| HindII | GTYRAC | 2 cut(s) | 327, 514 |
| HinfI | GANTC | 1 cut(s) | 342 |
| HpaI | GTTAAC | 1 cut(s) | 514 |
| HpaII | CCGG | 3 cut(s) | 58, 83, 127 |
| HphI | GGTGA | 2 cut(s) | 157, 475 |
| Hpy166II | GTNNAC | 2 cut(s) | 327, 514 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 48, 199, 312, 556 |
| Hpy188III | TCNNGA | 1 cut(s) | 127 |
| Hpy8I | GTNNAC | 2 cut(s) | 327, 514 |
| HpyAV | CCTTC | 2 cut(s) | 124, 575 |
| HpyCH4III | ACNGT | 2 cut(s) | 112, 169 |
| HpyCH4V | TGCA | 5 cut(s) | 55, 224, 366, 499, 561 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 71 |
| HpyF3I | CTNAG | 2 cut(s) | 147, 196 |
| Hsp92II | CATG | 1 cut(s) | 228 |
| HspAI | GCGC | 1 cut(s) | 353 |
| Kpn2I | TCCGGA | 1 cut(s) | 126 |
| KspAI | GTTAAC | 1 cut(s) | 514 |
| Kzo9I | GATC | 4 cut(s) | 43, 259, 316, 406 |
| LmnI | GCTCC | 1 cut(s) | 182 |
| LpnPI | CCDG | 8 cut(s) | 46, 71, 96, 140, 159, 317, 324, 493 |
| Lsp1109I | GCAGC | 1 cut(s) | 337 |
| MaeI | CTAG | 2 cut(s) | 273, 580 |
| MalI | GATC | 4 cut(s) | 45, 261, 318, 408 |
| MboI | GATC | 4 cut(s) | 43, 259, 316, 406 |
| MboII | GAAGA | 5 cut(s) | 178, 431, 436, 460, 533 |
| MfeI | CAATTG | 1 cut(s) | 500 |
| MflI | RGATCY | 1 cut(s) | 406 |
| MhlI | GDGCHC | 2 cut(s) | 159, 179 |
| MluCI | AATT | 3 cut(s) | 134, 278, 500 |
| MlyI | GAGTC | 1 cut(s) | 336 |
| MnlI | CCTC | 6 cut(s) | 112, 134, 142, 193, 311, 454 |
| MroI | TCCGGA | 1 cut(s) | 126 |
| MseI | TTAA | 2 cut(s) | 105, 513 |
| MspI | CCGG | 3 cut(s) | 58, 83, 127 |
| MunI | CAATTG | 1 cut(s) | 500 |
| Mva1269I | GAATGC | 1 cut(s) | 563 |
| MvnI | CGCG | 1 cut(s) | 355 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 71 |
| NdeII | GATC | 4 cut(s) | 43, 259, 316, 406 |
| NlaIII | CATG | 1 cut(s) | 228 |
| NlaIV | GGNNCC | 1 cut(s) | 178 |
| NspI | RCATGY | 1 cut(s) | 228 |
| NspV | TTCGAA | 1 cut(s) | 519 |
| PctI | GAATGC | 1 cut(s) | 563 |
| PinAI | ACCGGT | 1 cut(s) | 57 |
| PkrI | GCNGC | 1 cut(s) | 352 |
| PleI | GAGTC | 1 cut(s) | 336 |
| PpsI | GAGTC | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 1 cut(s) | 178 |
| PspPI | GGNCC | 3 cut(s) | 72, 121, 143 |
| PsuI | RGATCY | 1 cut(s) | 406 |
| RsaI | GTAC | 2 cut(s) | 472, 506 |
| RsaNI | GTAC | 2 cut(s) | 471, 505 |
| SaqAI | TTAA | 2 cut(s) | 105, 513 |
| SatI | GCNGC | 1 cut(s) | 351 |
| Sau3AI | GATC | 4 cut(s) | 43, 259, 316, 406 |
| Sau96I | GGNCC | 3 cut(s) | 72, 121, 143 |
| SchI | GAGTC | 1 cut(s) | 336 |
| SduI | GDGCHC | 2 cut(s) | 159, 179 |
| SetI | ASST | 4 cut(s) | 153, 395, 482, 567 |
| SfuI | TTCGAA | 1 cut(s) | 519 |
| SgrAI | CRCCGGYG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| Sse9I | AATT | 3 cut(s) | 134, 278, 500 |
| SsiI | CCGC | 2 cut(s) | 65, 173 |
| SspMI | CTAG | 2 cut(s) | 273, 580 |
| TaaI | ACNGT | 2 cut(s) | 112, 169 |
| TaqI | TCGA | 5 cut(s) | 153, 258, 456, 519, 568 |
| TasI | AATT | 3 cut(s) | 134, 278, 500 |
| TatI | WGTACW | 1 cut(s) | 504 |
| Tru1I | TTAA | 2 cut(s) | 105, 513 |
| Tru9I | TTAA | 2 cut(s) | 105, 513 |
| TscAI | CASTG | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 350 |
| TspDTI | ATGAA | 2 cut(s) | 205, 432 |
| TspRI | CASTG | 1 cut(s) | 31 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 128 |
| XapI | RAATTY | 2 cut(s) | 134, 278 |
| XceI | RCATGY | 1 cut(s) | 228 |
| XspI | CTAG | 2 cut(s) | 273, 580 |