Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 172, 668 |
| AccI | GTMKAC | 2 cut(s) | 310, 421 |
| AciI | CCGC | 2 cut(s) | 518, 543 |
| AclWI | GGATC | 1 cut(s) | 718 |
| AcoI | YGGCCR | 1 cut(s) | 21 |
| AcsI | RAATTY | 2 cut(s) | 353, 404 |
| AcuI | CTGAAG | 2 cut(s) | 759, 951 |
| AfaI | GTAC | 3 cut(s) | 341, 823, 936 |
| AfeI | AGCGCT | 1 cut(s) | 876 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 434 |
| AflIII | ACRYGT | 1 cut(s) | 753 |
| AgsI | TTSAA | 5 cut(s) | 276, 347, 389, 467, 499 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 754 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 1 cut(s) | 665 |
| AluI | AGCT | 1 cut(s) | 665 |
| Alw21I | GWGCWC | 2 cut(s) | 52, 121 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| Alw44I | GTGCAC | 1 cut(s) | 117 |
| AlwI | GGATC | 1 cut(s) | 718 |
| Aor51HI | AGCGCT | 1 cut(s) | 876 |
| AoxI | GGCC | 2 cut(s) | 21, 627 |
| ApaLI | GTGCAC | 1 cut(s) | 117 |
| ApeKI | GCWGC | 3 cut(s) | 123, 455, 644 |
| ApoI | RAATTY | 2 cut(s) | 353, 404 |
| AspLEI | GCGC | 2 cut(s) | 856, 877 |
| AspS9I | GGNCC | 1 cut(s) | 914 |
| AsuHPI | GGTGA | 2 cut(s) | 587, 733 |
| AvaII | GGWCC | 1 cut(s) | 914 |
| BaeGI | GKGCMC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 753 |
| Bbv12I | GWGCWC | 2 cut(s) | 52, 121 |
| BbvI | GCAGC | 3 cut(s) | 110, 442, 631 |
| BccI | CCATC | 3 cut(s) | 119, 506, 905 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BclI | TGATCA | 1 cut(s) | 300 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BfaI | CTAG | 1 cut(s) | 834 |
| BfoI | RGCGCY | 1 cut(s) | 878 |
| BfuAI | ACCTGC | 2 cut(s) | 172, 668 |
| BisI | GCNGC | 3 cut(s) | 124, 456, 645 |
| BlsI | GCNGC | 3 cut(s) | 125, 457, 646 |
| BmcAI | AGTACT | 2 cut(s) | 341, 936 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 914 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 754 |
| BmgT120I | GGNCC | 1 cut(s) | 914 |
| BmiI | GGNNCC | 2 cut(s) | 135, 235 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 2 cut(s) | 573, 700 |
| BpiI | GAAGAC | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 2 cut(s) | 624, 810 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 434 |
| Bse118I | RCCGGY | 1 cut(s) | 23 |
| Bse3DI | GCAATG | 1 cut(s) | 561 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseDI | CCNNGG | 2 cut(s) | 624, 810 |
| BseGI | GGATG | 2 cut(s) | 715, 916 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BseMI | GCAATG | 1 cut(s) | 561 |
| BseMII | CTCAG | 2 cut(s) | 273, 380 |
| BseRI | GAGGAG | 1 cut(s) | 799 |
| BseSI | GKGCMC | 1 cut(s) | 121 |
| BseXI | GCAGC | 3 cut(s) | 110, 442, 631 |
| BshFI | GGCC | 2 cut(s) | 23, 629 |
| BsiHKAI | GWGCWC | 2 cut(s) | 52, 121 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsmI | GAATGC | 1 cut(s) | 609 |
| BsnI | GGCC | 2 cut(s) | 23, 629 |
| Bsp1286I | GDGCHC | 2 cut(s) | 52, 121 |
| Bsp143I | GATC | 2 cut(s) | 300, 723 |
| BspACI | CCGC | 2 cut(s) | 518, 543 |
| BspANI | GGCC | 2 cut(s) | 23, 629 |
| BspCNI | CTCAG | 2 cut(s) | 274, 379 |
| BspHI | TCATGA | 1 cut(s) | 55 |
| BspLI | GGNNCC | 2 cut(s) | 135, 235 |
| BspMI | ACCTGC | 2 cut(s) | 172, 668 |
| BspPI | GGATC | 1 cut(s) | 718 |
| BsrDI | GCAATG | 1 cut(s) | 561 |
| BsrFI | RCCGGY | 1 cut(s) | 23 |
| BssAI | RCCGGY | 1 cut(s) | 23 |
| BssECI | CCNNGG | 2 cut(s) | 624, 810 |
| BssMI | GATC | 2 cut(s) | 300, 723 |
| BssNAI | GTATAC | 1 cut(s) | 422 |
| BssT1I | CCWWGG | 1 cut(s) | 624 |
| Bst1107I | GTATAC | 1 cut(s) | 422 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 842 |
| Bst6I | CTCTTC | 3 cut(s) | 277, 330, 735 |
| BstC8I | GCNNGC | 2 cut(s) | 121, 588 |
| BstDEI | CTNAG | 3 cut(s) | 282, 366, 966 |
| BstF5I | GGATG | 2 cut(s) | 715, 916 |
| BstH2I | RGCGCY | 1 cut(s) | 878 |
| BstHHI | GCGC | 2 cut(s) | 856, 877 |
| BstKTI | GATC | 2 cut(s) | 303, 726 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 2 cut(s) | 300, 723 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 896 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 757 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSLI | GKGCMC | 1 cut(s) | 121 |
| BstV1I | GCAGC | 3 cut(s) | 110, 442, 631 |
| BstV2I | GAAGAC | 1 cut(s) | 753 |
| BstZ17I | GTATAC | 1 cut(s) | 422 |
| BsuRI | GGCC | 2 cut(s) | 23, 629 |
| BtsCI | GGATG | 2 cut(s) | 715, 916 |
| BtsIMutI | CAGTG | 1 cut(s) | 630 |
| BveI | ACCTGC | 2 cut(s) | 172, 668 |
| Cac8I | GCNNGC | 2 cut(s) | 121, 588 |
| CciI | TCATGA | 1 cut(s) | 55 |
| CfoI | GCGC | 2 cut(s) | 856, 877 |
| Cfr10I | RCCGGY | 1 cut(s) | 23 |
| Cfr13I | GGNCC | 1 cut(s) | 914 |
| Csp6I | GTAC | 3 cut(s) | 340, 822, 935 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 140, 175 |
| CviAII | CATG | 4 cut(s) | 56, 130, 304, 754 |
| CviQI | GTAC | 3 cut(s) | 340, 822, 935 |
| DdeI | CTNAG | 3 cut(s) | 282, 366, 966 |
| DpnI | GATC | 2 cut(s) | 302, 725 |
| DpnII | GATC | 2 cut(s) | 300, 723 |
| DraI | TTTAAA | 1 cut(s) | 528 |
| DriI | GACNNNNNGTC | 1 cut(s) | 754 |
| EaeI | YGGCCR | 1 cut(s) | 21 |
| Eam1104I | CTCTTC | 3 cut(s) | 277, 330, 735 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 754 |
| EarI | CTCTTC | 3 cut(s) | 277, 330, 735 |
| Eco130I | CCWWGG | 1 cut(s) | 624 |
| Eco47I | GGWCC | 1 cut(s) | 914 |
| Eco47III | AGCGCT | 1 cut(s) | 876 |
| Eco57I | CTGAAG | 2 cut(s) | 759, 951 |
| EcoRI | GAATTC | 1 cut(s) | 404 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT14I | CCWWGG | 1 cut(s) | 624 |
| EcoT22I | ATGCAT | 1 cut(s) | 715 |
| ErhI | CCWWGG | 1 cut(s) | 624 |
| FaeI | CATG | 4 cut(s) | 59, 133, 307, 757 |
| FatI | CATG | 4 cut(s) | 55, 129, 303, 753 |
| FbaI | TGATCA | 1 cut(s) | 300 |
| FblI | GTMKAC | 2 cut(s) | 310, 421 |
| Fnu4HI | GCNGC | 3 cut(s) | 124, 456, 645 |
| FokI | GGATG | 2 cut(s) | 722, 923 |
| Fsp4HI | GCNGC | 3 cut(s) | 124, 456, 645 |
| FspBI | CTAG | 1 cut(s) | 834 |
| GlaI | GCGC | 2 cut(s) | 855, 876 |
| GluI | GCNGC | 3 cut(s) | 124, 456, 645 |
| HaeII | RGCGCY | 1 cut(s) | 878 |
| HaeIII | GGCC | 2 cut(s) | 23, 629 |
| HapII | CCGG | 1 cut(s) | 24 |
| HhaI | GCGC | 2 cut(s) | 856, 877 |
| Hin1II | CATG | 4 cut(s) | 59, 133, 307, 757 |
| Hin6I | GCGC | 2 cut(s) | 854, 875 |
| HinP1I | GCGC | 2 cut(s) | 854, 875 |
| HincII | GTYRAC | 2 cut(s) | 79, 311 |
| HindII | GTYRAC | 2 cut(s) | 79, 311 |
| HindIII | AAGCTT | 1 cut(s) | 663 |
| HpaI | GTTAAC | 1 cut(s) | 79 |
| HpaII | CCGG | 1 cut(s) | 24 |
| HphI | GGTGA | 2 cut(s) | 587, 733 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 119, 311, 422, 618 |
| Hpy188I | TCNGA | 3 cut(s) | 283, 931, 946 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 834 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 119, 311, 422, 618 |
| Hpy99I | CGWCG | 1 cut(s) | 315 |
| HpyAV | CCTTC | 1 cut(s) | 92 |
| HpyCH4III | ACNGT | 1 cut(s) | 842 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 896 |
| HpyF3I | CTNAG | 3 cut(s) | 282, 366, 966 |
| Hsp92II | CATG | 4 cut(s) | 59, 133, 307, 757 |
| HspAI | GCGC | 2 cut(s) | 854, 875 |
| Ksp22I | TGATCA | 1 cut(s) | 300 |
| KspAI | GTTAAC | 1 cut(s) | 79 |
| Kzo9I | GATC | 2 cut(s) | 300, 723 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| Lsp1109I | GCAGC | 3 cut(s) | 110, 442, 631 |
| LweI | GCATC | 2 cut(s) | 573, 700 |
| MaeI | CTAG | 1 cut(s) | 834 |
| MaeIII | GTNAC | 1 cut(s) | 558 |
| MalI | GATC | 2 cut(s) | 302, 725 |
| MboI | GATC | 2 cut(s) | 300, 723 |
| MfeI | CAATTG | 1 cut(s) | 960 |
| MhlI | GDGCHC | 2 cut(s) | 52, 121 |
| MluCI | AATT | 4 cut(s) | 353, 404, 635, 960 |
| MmeI | TCCRAC | 2 cut(s) | 203, 681 |
| Mph1103I | ATGCAT | 1 cut(s) | 715 |
| MseI | TTAA | 6 cut(s) | 78, 371, 477, 504, 527, 539 |
| MslI | CAYNNNNRTG | 1 cut(s) | 758 |
| MspI | CCGG | 1 cut(s) | 24 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MunI | CAATTG | 1 cut(s) | 960 |
| Mva1269I | GAATGC | 1 cut(s) | 609 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 896 |
| NdeII | GATC | 2 cut(s) | 300, 723 |
| NlaIII | CATG | 4 cut(s) | 59, 133, 307, 757 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 235 |
| NsiI | ATGCAT | 1 cut(s) | 715 |
| NspI | RCATGY | 1 cut(s) | 757 |
| PagI | TCATGA | 1 cut(s) | 55 |
| PciI | ACATGT | 1 cut(s) | 753 |
| PctI | GAATGC | 1 cut(s) | 609 |
| PkrI | GCNGC | 3 cut(s) | 125, 457, 646 |
| PscI | ACATGT | 1 cut(s) | 753 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 235 |
| PspPI | GGNCC | 1 cut(s) | 914 |
| RsaI | GTAC | 3 cut(s) | 341, 823, 936 |
| RsaNI | GTAC | 3 cut(s) | 340, 822, 935 |
| RseI | CAYNNNNRTG | 1 cut(s) | 758 |
| SalI | GTCGAC | 1 cut(s) | 309 |
| SaqAI | TTAA | 6 cut(s) | 78, 371, 477, 504, 527, 539 |
| SatI | GCNGC | 3 cut(s) | 124, 456, 645 |
| Sau3AI | GATC | 2 cut(s) | 300, 723 |
| Sau96I | GGNCC | 1 cut(s) | 914 |
| ScaI | AGTACT | 2 cut(s) | 341, 936 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 2 cut(s) | 52, 121 |
| SfaNI | GCATC | 2 cut(s) | 573, 700 |
| SinI | GGWCC | 1 cut(s) | 914 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 758 |
| Sse9I | AATT | 4 cut(s) | 353, 404, 635, 960 |
| SsiI | CCGC | 2 cut(s) | 518, 543 |
| SspI | AATATT | 1 cut(s) | 651 |
| SspMI | CTAG | 1 cut(s) | 834 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| StyI | CCWWGG | 1 cut(s) | 624 |
| TaaI | ACNGT | 1 cut(s) | 842 |
| TaqI | TCGA | 1 cut(s) | 310 |
| TasI | AATT | 4 cut(s) | 353, 404, 635, 960 |
| TatI | WGTACW | 3 cut(s) | 339, 821, 934 |
| Tru1I | TTAA | 6 cut(s) | 78, 371, 477, 504, 527, 539 |
| Tru9I | TTAA | 6 cut(s) | 78, 371, 477, 504, 527, 539 |
| TscAI | CASTG | 1 cut(s) | 637 |
| TseI | GCWGC | 3 cut(s) | 123, 455, 644 |
| TspDTI | ATGAA | 4 cut(s) | 44, 241, 348, 429 |
| TspGWI | ACGGA | 2 cut(s) | 577, 716 |
| TspRI | CASTG | 1 cut(s) | 637 |
| VneI | GTGCAC | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 914 |
| XapI | RAATTY | 2 cut(s) | 353, 404 |
| XbaI | TCTAGA | 1 cut(s) | 833 |
| XceI | RCATGY | 1 cut(s) | 757 |
| XmiI | GTMKAC | 2 cut(s) | 310, 421 |
| XspI | CTAG | 1 cut(s) | 834 |
| ZrmI | AGTACT | 2 cut(s) | 341, 936 |
| Zsp2I | ATGCAT | 1 cut(s) | 715 |