Rorug03G0129800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000072
Physical Location & Seq
Reverse (-)
10520607 .. 10523264
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0129800.1

Sequence Viewer

Length: 984 bp
ATGGCGAACGACAAGTCGGTCATGGCCGTCATCCGAGCCGCGCGCCCATCTTTCCGCAACCAAAACGACAAGGTCGCCTTTGCCGTTCACGCTTCCTTCGCCGCCTCCGGCTACGAGTTAATCGCCGCCGGCCGCCCTGCTTTTTCCGAAAACGCCCTCTCCTCTTCCGCAACTGAGGAAGTGGGTATTGAGAAATGGAACGAGCTGGAGAACGAGTACGCGTTCGTGTATTTGAACCCGGAAAAGGGTTCGAAGAAGGTTCTGGTGAAGTGTCTTGTGATTGATGGAACATTGAGTGTAGATGCTCTGGCTGATGGGGCTTCTCAGAACGTTCACTGTGAATTTAATGTTGGTGATTATGTGCAAGAAAATGAGGGCAGTAATTACTCATCACAGTTTAAGAACTTGGACACCCTAGTGAAGAATCTCAACGCTCAAGTTTTGTCGAAATTGGAGGGGTCTTCCACACCCAAGCCAACAAGGGAAACTGGCAGTTCAGACTTGACTAATATATCAGCAAATGAGCCTGGGCATGGTGCTGGATCTCCAGGAGTTGGATATCGACCTGGGCCTGGTGCTGGAAGGTATCCAGGTGGTGGTGATGATCTTTATCCTGGGGCTGGCGCTGGAATGTATCCTAGGTATCCAGTGGGTGGTAGCGATCTTTATCCTGGACCTGGTGCTGGAATGCCTTCTAGGGGTGCTTTTGACGATGGAAGCATGTTTGTTGGACCCAATGATCGTAGATTTGGGGACGTTGGACAACCTGGGTTTCCGGGGTTTCCTGGAGGACTACCGGGTATTCGTGATCCTCGGTTTGGTGCTGAAAGACCAGATGGTGTTCCTCCAGGTGCTCGCTTTGATCCATATGGGCCGCCTGGGCTTCCTGATTTTGATCCAGATTTTGCAAGGCGCCCACAGGGGCCAGGAAGCAGGATCCACCCTGACTTGGAGCAACCCGGGAGTGGTTCGGACTATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

327

Amino Acids

34.32

Weight (kDa)

4.9

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI31_Prot_N PF11566 15 - 153 1.9e-24 PI31 proteasome regulator N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 912
AccB7I CCANNNNNTGG 3 cut(s) 554, 596, 653
AccII CGCG 3 cut(s) 41, 43, 221
AciI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 875
AclI AACGTT 1 cut(s) 330
AclWI GGATC 6 cut(s) 550, 803, 857, 890, 931, 944
AcoI YGGCCR 2 cut(s) 24, 130
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 913
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 856
AlwI GGATC 6 cut(s) 550, 803, 857, 890, 931, 944
Ama87I CYCGRG 1 cut(s) 959
AoxI GGCC 5 cut(s) 24, 130, 569, 872, 923
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 691
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 4 cut(s) 43, 45, 626, 915
AspS9I GGNCC 5 cut(s) 569, 674, 731, 872, 923
AsuC2I CCSGG 5 cut(s) 239, 777, 798, 960, 961
AsuHPI GGTGA 3 cut(s) 277, 365, 611
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 2 cut(s) 674, 731
AvrII CCTAGG 1 cut(s) 638
BamHI GGATCC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 912
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 856
BccI CCATC 5 cut(s) 55, 278, 308, 707, 830
BceAI ACGGC 2 cut(s) 11, 68
BciVI GTATCC 3 cut(s) 597, 645, 654
BcnI CCSGG 5 cut(s) 239, 777, 798, 960, 961
BfaI CTAG 4 cut(s) 416, 639, 696, 982
BfoI RGCGCY 2 cut(s) 627, 916
BfuI GTATCC 3 cut(s) 597, 645, 654
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 5 cut(s) 39, 102, 126, 133, 875
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 5 cut(s) 40, 103, 127, 134, 876
Bme18I GGWCC 2 cut(s) 674, 731
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 5 cut(s) 569, 674, 731, 872, 923
BmiI GGNNCC 4 cut(s) 733, 914, 924, 938
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 4 cut(s) 227, 531, 807, 831
Bpu14I TTCGAA 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 5 cut(s) 239, 777, 798, 960, 961
BsaBI GATNNNNATC 3 cut(s) 609, 666, 894
BsaHI GRCGYC 1 cut(s) 913
BsaJI CCNNGG 9 cut(s) 527, 566, 614, 638, 767, 776, 812, 878, 959
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 200, 230
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 493, 647
Bse8I GATNNNNATC 3 cut(s) 609, 666, 894
BseDI CCNNGG 9 cut(s) 527, 566, 614, 638, 767, 776, 812, 878, 959
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 3 cut(s) 609, 666, 894
BseMII CTCAG 2 cut(s) 165, 338
BseNI ACTGG 2 cut(s) 493, 647
BsePI GCGCGC 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 151
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 3 cut(s) 41, 43, 221
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 5 cut(s) 26, 132, 571, 874, 925
BshNI GGYRCC 1 cut(s) 912
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 856
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 6 cut(s) 108, 129, 239, 776, 797, 960
BslFI GGGAC 1 cut(s) 767
BsmFI GGGAC 1 cut(s) 767
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 5 cut(s) 26, 132, 571, 874, 925
BsoBI CYCGRG 1 cut(s) 959
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 856
Bsp143I GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
BspACI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 875
BspANI GGCC 5 cut(s) 26, 132, 571, 874, 925
BspCNI CTCAG 2 cut(s) 166, 337
BspFNI CGCG 3 cut(s) 41, 43, 221
BspLI GGNNCC 4 cut(s) 733, 914, 924, 938
BspPI GGATC 6 cut(s) 550, 803, 857, 890, 931, 944
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 493, 647
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 9 cut(s) 527, 566, 614, 638, 767, 776, 812, 878, 959
BssHII GCGCGC 1 cut(s) 41
BssMI GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
BssNI GRCGYC 1 cut(s) 913
BssT1I CCWWGG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 338, 396
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 913
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 43, 130, 622, 856
BstDEI CTNAG 2 cut(s) 174, 324
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 3 cut(s) 41, 43, 221
BstH2I RGCGCY 2 cut(s) 627, 916
BstHHI GCGC 4 cut(s) 43, 45, 626, 915
BstKTI GATC 8 cut(s) 545, 607, 664, 742, 811, 865, 898, 939
BstMBI GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 880
BstNSI RCATGY 1 cut(s) 724
BstUI CGCG 3 cut(s) 41, 43, 221
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 542, 936
BstYI RGATCY 2 cut(s) 542, 936
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 3 cut(s) 597, 645, 654
BsuRI GGCC 5 cut(s) 26, 132, 571, 874, 925
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 334, 654
Cac8I GCNNGC 4 cut(s) 43, 130, 622, 856
CfoI GCGC 4 cut(s) 43, 45, 626, 915
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 569, 674, 731, 872, 923
Cfr9I CCCGGG 1 cut(s) 959
CsiI ACCWGGT 1 cut(s) 676
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 22, 533, 721
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 174, 324
DinI GGCGCC 1 cut(s) 914
DpnI GATC 8 cut(s) 544, 606, 663, 741, 810, 864, 897, 938
DpnII GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 2 cut(s) 24, 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 638
Eco32I GATATC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 674, 731
Eco52I CGGCCG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 959
EcoRV GATATC 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 638
EgeI GGCGCC 1 cut(s) 914
EheI GGCGCC 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 3 cut(s) 25, 536, 724
FaiI YATR 8 cut(s) 23, 360, 512, 534, 722, 868, 870, 978
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 767
FatI CATG 3 cut(s) 21, 532, 720
FauNDI CATATG 1 cut(s) 868
Fnu4HI GCNGC 5 cut(s) 39, 102, 126, 133, 875
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 39, 102, 126, 133, 875
FspBI CTAG 4 cut(s) 416, 639, 696, 982
GlaI GCGC 4 cut(s) 42, 44, 625, 914
GluI GCNGC 5 cut(s) 39, 102, 126, 133, 875
GsuI CTGGAG 4 cut(s) 227, 531, 807, 831
HaeII RGCGCY 2 cut(s) 627, 916
HaeIII GGCC 5 cut(s) 26, 132, 571, 874, 925
HapII CCGG 6 cut(s) 108, 129, 239, 776, 797, 960
HhaI GCGC 4 cut(s) 43, 45, 626, 915
Hin1I GRCGYC 1 cut(s) 913
Hin1II CATG 3 cut(s) 25, 536, 724
Hin6I GCGC 4 cut(s) 41, 43, 624, 913
HinP1I GCGC 4 cut(s) 41, 43, 624, 913
HinfI GANTC 1 cut(s) 424
HpaII CCGG 6 cut(s) 108, 129, 239, 776, 797, 960
HphI GGTGA 3 cut(s) 277, 365, 611
Hpy166II GTNNAC 2 cut(s) 88, 334
Hpy188I TCNGA 5 cut(s) 35, 148, 327, 499, 973
Hpy188III TCNNGA 3 cut(s) 806, 887, 899
Hpy8I GTNNAC 2 cut(s) 88, 334
HpyAV CCTTC 4 cut(s) 106, 250, 576, 702
HpyCH4III ACNGT 2 cut(s) 338, 396
HpyCH4IV ACGT 2 cut(s) 330, 756
HpyCH4V TGCA 2 cut(s) 364, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 880
HpyF3I CTNAG 2 cut(s) 174, 324
HpySE526I ACGT 2 cut(s) 330, 756
Hsp92I GRCGYC 1 cut(s) 913
Hsp92II CATG 3 cut(s) 25, 536, 724
HspAI GCGC 4 cut(s) 41, 43, 624, 913
KasI GGCGCC 1 cut(s) 912
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
LmnI GCTCC 1 cut(s) 952
LweI GCATC 1 cut(s) 292
MabI ACCWGGT 1 cut(s) 676
MaeI CTAG 4 cut(s) 416, 639, 696, 982
MaeII ACGT 2 cut(s) 330, 756
MalI GATC 8 cut(s) 544, 606, 663, 741, 810, 864, 897, 938
MboI GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
MboII GAAGA 4 cut(s) 156, 265, 433, 453
MflI RGATCY 2 cut(s) 542, 936
MhlI GDGCHC 1 cut(s) 856
MluCI AATT 3 cut(s) 341, 382, 449
MluI ACGCGT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 913
MmeI TCCRAC 3 cut(s) 535, 709, 739
MnlI CCTC 9 cut(s) 115, 167, 169, 172, 367, 448, 782, 822, 855
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 691
MseI TTAA 3 cut(s) 119, 345, 399
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 6 cut(s) 108, 129, 239, 776, 797, 960
Mva1269I GAATGC 1 cut(s) 693
MvnI CGCG 3 cut(s) 41, 43, 221
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 317, 880
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 913
NciI CCSGG 5 cut(s) 239, 777, 798, 960, 961
NdeI CATATG 1 cut(s) 868
NdeII GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 25, 536, 724
NlaIV GGNNCC 4 cut(s) 733, 914, 924, 938
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 416
PauI GCGCGC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 693
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 691
PfeI GAWTC 1 cut(s) 424
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 3 cut(s) 554, 596, 653
PfoI TCCNGGA 3 cut(s) 547, 670, 784
PkrI GCNGC 5 cut(s) 40, 103, 127, 134, 876
PluTI GGCGCC 1 cut(s) 916
Psp1406I AACGTT 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 733, 914, 924, 938
PspPI GGNCC 5 cut(s) 569, 674, 731, 872, 923
PsuI RGATCY 2 cut(s) 542, 936
PsyI GACNNNGTC 1 cut(s) 71
PteI GCGCGC 1 cut(s) 41
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 119, 345, 399
SatI GCNGC 5 cut(s) 39, 102, 126, 133, 875
Sau3AI GATC 8 cut(s) 542, 604, 661, 739, 808, 862, 895, 936
Sau96I GGNCC 5 cut(s) 569, 674, 731, 872, 923
SduI GDGCHC 1 cut(s) 856
SexAI ACCWGGT 1 cut(s) 676
SfaNI GCATC 1 cut(s) 292
SfoI GGCGCC 1 cut(s) 914
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 2 cut(s) 674, 731
SmaI CCCGGG 1 cut(s) 961
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 3 cut(s) 341, 382, 449
SsiI CCGC 7 cut(s) 39, 55, 102, 126, 133, 168, 875
SspDI GGCGCC 1 cut(s) 912
SspMI CTAG 4 cut(s) 416, 639, 696, 982
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 2 cut(s) 338, 396
TaiI ACGT 2 cut(s) 333, 759
TaqI TCGA 3 cut(s) 251, 446, 562
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 341, 382, 449
TauI GCSGC 5 cut(s) 41, 104, 128, 135, 877
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 3 cut(s) 119, 345, 399
Tru9I TTAA 3 cut(s) 119, 345, 399
TscAI CASTG 2 cut(s) 341, 654
TspMI CCCGGG 1 cut(s) 959
TspRI CASTG 2 cut(s) 341, 654
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 3 cut(s) 554, 596, 653
VpaK11BI GGWCC 2 cut(s) 674, 731
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 724
XmaI CCCGGG 1 cut(s) 959
XmaJI CCTAGG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 691
XspI CTAG 4 cut(s) 416, 639, 696, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.