Rorug02G0074300

Holliday junction DNA helicase ruvB N-terminus

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
5898826 .. 5901414
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0074300.1

Sequence Viewer

Length: 1404 bp
ATGGTAGGCAGCGACTTAACCGTTGCTCTCCAAAGGTTGAAGAGGGAAGAATGCAAGCGCACAAAGCACGACCCCCATTTCTCCAATTGGAAGGTTCTTGTTGGGCCCTGTGATTGGGAGGACTTTTCGGTGGGGAAGGAAGGAGCTGAAAGGTACAGAGTTCAAAACCTGCCTAGGAACGAGAGCCCAGGAGTGTATGAACTTGGGGTTGCTGTTTTGCGCGGTGGTACTGGTTTAGGCCGTGGGATTGAAGCGGATAAAATAGTCCCGGTTTATCTTGGACAGGCTGATAGTGTGAGGACCAGGCTCCAGCAGTATGGCCGGACAGGGGCTCATTTGGGCAAGTGCTGCTGCTCAGTTGGGATTCCGAGTGAGCGAATCCGAAAGGGGCCTGGATTGTTTGAGGAGATGCTGGCAAGAGGCTACCCCATTGTGTATAGATGGGCTCCTATGGGAACCAAAAGTGAGGCCCTGAAAACAGAAAGTCAGCTGCTTAACACATTTGATTATGCATGGAACACAAGCATCAATGGTGCACGGCGCCCTGATGATGTCCTTCAGAAACTCAAGAAAATTTCCTCAAAACCTACCCGATTTACTAATATTGTCCAGCGGCTTCTACCTTTCAGACAGAAGCAAGTCGGTATTAGAATTAACTCCAGCAAACTGGTTTCAACAGAGGACAAGTTCAGTGACTATGCTGATAGGGAGAGCCGGACTCTCATAGCCCAGGTTTTCAAGTTTGGCAGATCACAGCCTAGGTTAGTTTTGGATAGAAGTGGGATTACTCAGGAAAATACTATAATTTGTGGGGTGGCTGTAGGGGATGGGTCCATCTGTAGAAAGGAACCAGTTCAAGGAAGAAAGAGGTGTGCTGAACACAAAGGGATGAGGATTACAGGGTCGATTACAGTTAGGATATCAAATAGCAATATTGATTCAAAATGCAGTGTTATCAGCAACAGAGAATTTGTTTCGTATGAAAGTGGGATTACTCAGGAGAACACTGAAATTTGTGGGGTGGCTGGAGGTGATGGGTCTATATGTAGAACACCACCAGTTCAAGGAAGAAAGAGGTGTGCTGAGCACAAAGGGATGAGGATTAAAGGGTCAATTACAGTTAGGATATCAGATAAGAATGTGGACTCAAAGTGCAGTGTTCTCAGCAACAAAGAGCTTGATAGTCATGATGCATCAAATGTGAAATATGAACCGGTACAGCTTCCACCAGTTCATGTTTGTGAGAGCTCTACATCGATATGTGGATTCATCTTGGCCGATGGCTCTCCTTGTAGAACAGAACCAATTCAAGGAAGAAAAAGGTGTGATGAGCACAAAGGGAGAAGGATTCAGAAATGCAACTCCAAGTCAGTGAAAGAAGAGAAGGTCGAAATATGTGCATGA

Protein Analysis

467

Amino Acids

51.86

Weight (kDa)

9.41

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIY_YIG_domain PF19239 27 - 186 1.5e-68 GIY-YIG domain-containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 540
AccII CGCG 1 cut(s) 222
AciI CCGC 3 cut(s) 222, 254, 613
AcoI YGGCCR 2 cut(s) 319, 1275
AcsI RAATTY 3 cut(s) 573, 968, 1011
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 541
AfaI GTAC 3 cut(s) 155, 229, 1218
AfiI CCNNNNNNNGG 5 cut(s) 114, 328, 857, 1064, 1310
AgeI ACCGGT 1 cut(s) 1213
AgsI TTSAA 9 cut(s) 40, 164, 251, 675, 739, 857, 942, 1064, 1310
AjnI CCWGG 4 cut(s) 187, 302, 391, 729
AluBI AGCT 5 cut(s) 146, 490, 1177, 1222, 1248
AluI AGCT 5 cut(s) 146, 490, 1177, 1222, 1248
Alw21I GWGCWC 4 cut(s) 538, 1089, 1250, 1335
Alw44I GTGCAC 1 cut(s) 534
AoxI GGCC 6 cut(s) 104, 238, 319, 389, 468, 1275
ApaI GGGCCC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 4 cut(s) 9, 348, 351, 490
ApoI RAATTY 3 cut(s) 573, 968, 1011
AsiGI ACCGGT 1 cut(s) 1213
Asp700I GAANNNNTTC 2 cut(s) 852, 1305
AspA2I CCTAGG 2 cut(s) 173, 758
AspLEI GCGC 3 cut(s) 60, 222, 543
AspS9I GGNCC 6 cut(s) 104, 105, 300, 389, 469, 831
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 1043
AvaII GGWCC 2 cut(s) 300, 831
AvrII CCTAGG 2 cut(s) 173, 758
BaeGI GKGCMC 2 cut(s) 108, 538
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 5 cut(s) 108, 188, 334, 448, 1250
BarI GAAGNNNNNNTAC 2 cut(s) 769, 801
Bbv12I GWGCWC 4 cut(s) 538, 1089, 1250, 1335
BbvI GCAGC 4 cut(s) 21, 335, 338, 477
BccI CCATC 5 cut(s) 435, 821, 842, 1028, 1274
BceAI ACGGC 2 cut(s) 225, 554
BcgI CGANNNNNNTGC 1 cut(s) 1379
BciT130I CCWGG 4 cut(s) 189, 304, 393, 731
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 2 cut(s) 174, 759
BfmI CTRYAG 2 cut(s) 819, 838
BfoI RGCGCY 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 5 cut(s) 10, 349, 352, 491, 614
BlnI CCTAGG 2 cut(s) 173, 758
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 5 cut(s) 11, 350, 353, 492, 615
Bme1390I CCNGG 5 cut(s) 189, 269, 304, 393, 731
Bme18I GGWCC 2 cut(s) 300, 831
BmgT120I GGNCC 6 cut(s) 104, 105, 300, 389, 469, 831
BmiI GGNNCC 8 cut(s) 106, 308, 390, 447, 457, 542, 832, 849
BmrFI CCNGG 5 cut(s) 189, 269, 304, 393, 731
BmsI GCATC 4 cut(s) 399, 534, 1180, 1202
BplI GAGNNNNNCTC 2 cut(s) 703, 735
BpmI CTGGAG 3 cut(s) 293, 643, 1047
Bpu1102I GCTNAGC 1 cut(s) 1083
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 1256
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 5 cut(s) 173, 187, 241, 729, 758
BsaWI WCCGGW 1 cut(s) 1213
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 328, 857, 1064, 1310
Bse118I RCCGGY 1 cut(s) 1213
Bse1I ACTGG 5 cut(s) 235, 672, 851, 1058, 1229
BseBI CCWGG 4 cut(s) 189, 304, 393, 731
BseCI ATCGAT 1 cut(s) 1256
BseDI CCNNGG 5 cut(s) 173, 187, 241, 729, 758
BseGI GGATG 3 cut(s) 832, 894, 1101
BseLI CCNNNNNNNGG 5 cut(s) 114, 328, 857, 1064, 1310
BseMII CTCAG 5 cut(s) 369, 803, 1010, 1074, 1177
BseNI ACTGG 5 cut(s) 235, 672, 851, 1058, 1229
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 2 cut(s) 108, 538
BseXI GCAGC 4 cut(s) 21, 335, 338, 477
BsgI GTGCAG 1 cut(s) 1174
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 6 cut(s) 106, 240, 321, 391, 470, 1277
BshNI GGYRCC 1 cut(s) 540
BshTI ACCGGT 1 cut(s) 1213
BshVI ATCGAT 1 cut(s) 1256
BsiHKAI GWGCWC 4 cut(s) 538, 1089, 1250, 1335
BsiSI CCGG 4 cut(s) 269, 322, 715, 1214
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 5 cut(s) 114, 328, 857, 1064, 1310
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 6 cut(s) 106, 240, 321, 391, 470, 1277
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 8 cut(s) 108, 188, 334, 448, 538, 1089, 1250, 1335
Bsp143I GATC 1 cut(s) 749
Bsp1720I GCTNAGC 1 cut(s) 1083
BspACI CCGC 3 cut(s) 222, 254, 613
BspANI GGCC 6 cut(s) 106, 240, 321, 391, 470, 1277
BspCNI CTCAG 5 cut(s) 368, 802, 1009, 1075, 1176
BspDI ATCGAT 1 cut(s) 1256
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 1186
BspLI GGNNCC 8 cut(s) 106, 308, 390, 447, 457, 542, 832, 849
BspMI ACCTGC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 1213
BsrI ACTGG 5 cut(s) 235, 672, 851, 1058, 1229
BssAI RCCGGY 1 cut(s) 1213
BssECI CCNNGG 5 cut(s) 173, 187, 241, 729, 758
BssMI GATC 1 cut(s) 749
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 2 cut(s) 173, 758
Bst2UI CCWGG 4 cut(s) 189, 304, 393, 731
Bst4CI ACNGT 3 cut(s) 22, 913, 1120
Bst6I CTCTTC 2 cut(s) 35, 1374
BstACI GRCGYC 1 cut(s) 541
BstAPI GCANNNNNTGC 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 56, 414
BstDEI CTNAG 5 cut(s) 355, 789, 996, 1083, 1163
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 832, 894, 1101
BstFNI CGCG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 3 cut(s) 60, 222, 543
BstKTI GATC 1 cut(s) 752
BstMBI GATC 1 cut(s) 749
BstMWI GCNNNNNNNGC 2 cut(s) 64, 348
BstNI CCWGG 4 cut(s) 189, 304, 393, 731
BstSCI CCNGG 5 cut(s) 187, 267, 302, 391, 729
BstSFI CTRYAG 2 cut(s) 819, 838
BstSLI GKGCMC 2 cut(s) 108, 538
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 4 cut(s) 21, 335, 338, 477
BstXI CCANNNNNNTGG 2 cut(s) 317, 667
Bsu15I ATCGAT 1 cut(s) 1256
BsuRI GGCC 6 cut(s) 106, 240, 321, 391, 470, 1277
BsuTUI ATCGAT 1 cut(s) 1256
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 832, 894, 1101
BtsI GCAGTG 2 cut(s) 955, 1162
BtsIMutI CAGTG 5 cut(s) 697, 955, 1005, 1162, 1377
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 56, 414
CciI TCATGA 1 cut(s) 1186
CfoI GCGC 3 cut(s) 60, 222, 543
Cfr10I RCCGGY 1 cut(s) 1213
Cfr13I GGNCC 6 cut(s) 104, 105, 300, 389, 469, 831
ClaI ATCGAT 1 cut(s) 1256
Csp6I GTAC 3 cut(s) 154, 228, 1217
CspAI ACCGGT 1 cut(s) 1213
CviAII CATG 4 cut(s) 513, 1187, 1235, 1401
CviQI GTAC 3 cut(s) 154, 228, 1217
DdeI CTNAG 5 cut(s) 355, 789, 996, 1083, 1163
DinI GGCGCC 1 cut(s) 542
DpnI GATC 1 cut(s) 751
DpnII GATC 1 cut(s) 749
EaeI YGGCCR 2 cut(s) 319, 1275
Eam1104I CTCTTC 2 cut(s) 35, 1374
EarI CTCTTC 2 cut(s) 35, 1374
Ecl136II GAGCTC 1 cut(s) 1248
Eco130I CCWWGG 2 cut(s) 173, 758
Eco24I GRGCYC 5 cut(s) 108, 188, 334, 448, 1250
Eco32I GATATC 2 cut(s) 921, 1128
Eco47I GGWCC 2 cut(s) 300, 831
Eco53kI GAGCTC 1 cut(s) 1248
Eco57I CTGAAG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 1248
EcoO109I RGGNCCY 3 cut(s) 105, 389, 469
EcoRII CCWGG 4 cut(s) 187, 302, 391, 729
EcoRV GATATC 2 cut(s) 921, 1128
EcoT14I CCWWGG 2 cut(s) 173, 758
EcoT22I ATGCAT 2 cut(s) 514, 1195
EcoT38I GRGCYC 5 cut(s) 108, 188, 334, 448, 1250
EgeI GGCGCC 1 cut(s) 542
EheI GGCGCC 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 173, 758
FaeI CATG 4 cut(s) 516, 1190, 1238, 1404
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 512, 1186, 1234, 1400
Fnu4HI GCNGC 5 cut(s) 10, 349, 352, 491, 614
FokI GGATG 3 cut(s) 839, 901, 1108
FriOI GRGCYC 5 cut(s) 108, 188, 334, 448, 1250
Fsp4HI GCNGC 5 cut(s) 10, 349, 352, 491, 614
FspBI CTAG 2 cut(s) 174, 759
GlaI GCGC 3 cut(s) 59, 221, 542
GluI GCNGC 5 cut(s) 10, 349, 352, 491, 614
GsuI CTGGAG 3 cut(s) 293, 643, 1047
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 6 cut(s) 106, 240, 321, 391, 470, 1277
HapII CCGG 4 cut(s) 269, 322, 715, 1214
HhaI GCGC 3 cut(s) 60, 222, 543
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 4 cut(s) 516, 1190, 1238, 1404
Hin6I GCGC 3 cut(s) 58, 220, 541
HinP1I GCGC 3 cut(s) 58, 220, 541
HinfI GANTC 7 cut(s) 364, 378, 718, 938, 1145, 1266, 1348
HpaII CCGG 4 cut(s) 269, 322, 715, 1214
HphI GGTGA 1 cut(s) 1043
Hpy166II GTNNAC 2 cut(s) 536, 1144
Hpy188I TCNGA 6 cut(s) 369, 383, 561, 629, 1132, 1353
Hpy188III TCNNGA 4 cut(s) 568, 791, 998, 1187
Hpy8I GTNNAC 2 cut(s) 536, 1144
HpyAV CCTTC 6 cut(s) 85, 130, 134, 566, 1338, 1378
HpyCH4III ACNGT 3 cut(s) 22, 913, 1120
HpyCH4V TGCA 8 cut(s) 54, 512, 536, 948, 1155, 1193, 1359, 1400
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 348
HpyF3I CTNAG 5 cut(s) 355, 789, 996, 1083, 1163
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 4 cut(s) 516, 1190, 1238, 1404
HspAI GCGC 3 cut(s) 58, 220, 541
KasI GGCGCC 1 cut(s) 540
Kzo9I GATC 1 cut(s) 749
LmnI GCTCC 3 cut(s) 143, 312, 451
Lsp1109I GCAGC 4 cut(s) 21, 335, 338, 477
LweI GCATC 4 cut(s) 399, 534, 1180, 1202
MaeI CTAG 2 cut(s) 174, 759
MaeIII GTNAC 1 cut(s) 692
MalI GATC 1 cut(s) 751
MboI GATC 1 cut(s) 749
MboII GAAGA 6 cut(s) 52, 59, 873, 1080, 1326, 1391
MfeI CAATTG 1 cut(s) 85
MhlI GDGCHC 8 cut(s) 108, 188, 334, 448, 538, 1089, 1250, 1335
MluCI AATT 8 cut(s) 85, 573, 651, 804, 968, 1011, 1113, 1305
Mly113I GGCGCC 1 cut(s) 541
MlyI GAGTC 2 cut(s) 712, 1139
Mph1103I ATGCAT 2 cut(s) 514, 1195
MroXI GAANNNNTTC 2 cut(s) 852, 1305
MseI TTAA 4 cut(s) 17, 495, 654, 1104
MslI CAYNNNNRTG 2 cut(s) 1239, 1258
MspA1I CMGCKG 2 cut(s) 490, 613
MspI CCGG 4 cut(s) 269, 322, 715, 1214
MspR9I CCNGG 5 cut(s) 189, 269, 304, 393, 731
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 4 cut(s) 189, 304, 393, 731
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 64, 348
NarI GGCGCC 1 cut(s) 541
NciI CCSGG 1 cut(s) 269
NdeII GATC 1 cut(s) 749
NlaIII CATG 4 cut(s) 516, 1190, 1238, 1404
NlaIV GGNNCC 8 cut(s) 106, 308, 390, 447, 457, 542, 832, 849
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 2 cut(s) 514, 1195
PagI TCATGA 1 cut(s) 1186
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 852, 1305
PfeI GAWTC 5 cut(s) 364, 378, 938, 1266, 1348
PinAI ACCGGT 1 cut(s) 1213
PkrI GCNGC 5 cut(s) 11, 350, 353, 492, 615
PleI GAGTC 2 cut(s) 712, 1139
PluTI GGCGCC 1 cut(s) 544
PpsI GAGTC 2 cut(s) 712, 1139
Psp124BI GAGCTC 1 cut(s) 1250
Psp6I CCWGG 4 cut(s) 187, 302, 391, 729
PspGI CCWGG 4 cut(s) 187, 302, 391, 729
PspN4I GGNNCC 8 cut(s) 106, 308, 390, 447, 457, 542, 832, 849
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 6 cut(s) 104, 105, 300, 389, 469, 831
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 3 cut(s) 155, 229, 1218
RsaNI GTAC 3 cut(s) 154, 228, 1217
RseI CAYNNNNRTG 2 cut(s) 1239, 1258
SacI GAGCTC 1 cut(s) 1250
SaqAI TTAA 4 cut(s) 17, 495, 654, 1104
SatI GCNGC 5 cut(s) 10, 349, 352, 491, 614
Sau3AI GATC 1 cut(s) 749
Sau96I GGNCC 6 cut(s) 104, 105, 300, 389, 469, 831
SchI GAGTC 2 cut(s) 712, 1139
ScrFI CCNGG 5 cut(s) 189, 269, 304, 393, 731
SduI GDGCHC 8 cut(s) 108, 188, 334, 448, 538, 1089, 1250, 1335
SfaNI GCATC 4 cut(s) 399, 534, 1180, 1202
SfcI CTRYAG 2 cut(s) 819, 838
SfoI GGCGCC 1 cut(s) 542
SinI GGWCC 2 cut(s) 300, 831
SmiMI CAYNNNNRTG 2 cut(s) 1239, 1258
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 8 cut(s) 85, 573, 651, 804, 968, 1011, 1113, 1305
SsiI CCGC 3 cut(s) 222, 254, 613
SspDI GGCGCC 1 cut(s) 540
SspI AATATT 2 cut(s) 604, 934
SspMI CTAG 2 cut(s) 174, 759
SstI GAGCTC 1 cut(s) 1250
StyD4I CCNGG 5 cut(s) 187, 267, 302, 391, 729
StyI CCWWGG 2 cut(s) 173, 758
TaaI ACNGT 3 cut(s) 22, 913, 1120
TaqI TCGA 3 cut(s) 905, 1256, 1389
TasI AATT 8 cut(s) 85, 573, 651, 804, 968, 1011, 1113, 1305
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 5 cut(s) 364, 378, 938, 1266, 1348
Tru1I TTAA 4 cut(s) 17, 495, 654, 1104
Tru9I TTAA 4 cut(s) 17, 495, 654, 1104
TscAI CASTG 5 cut(s) 697, 955, 1012, 1162, 1377
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 4 cut(s) 9, 348, 351, 490
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 213, 996, 1223, 1224, 1258
TspRI CASTG 5 cut(s) 697, 955, 1012, 1162, 1377
VneI GTGCAC 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 300, 831
XapI RAATTY 3 cut(s) 573, 968, 1011
XmaJI CCTAGG 2 cut(s) 173, 758
XmnI GAANNNNTTC 2 cut(s) 852, 1305
XspI CTAG 2 cut(s) 174, 759
Zsp2I ATGCAT 2 cut(s) 514, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.