Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 117 - 236 | 1.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 494, 560 |
| AclWI | GGATC | 2 cut(s) | 394, 504 |
| AcsI | RAATTY | 2 cut(s) | 55, 165 |
| AfaI | GTAC | 2 cut(s) | 47, 338 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 329, 601, 602 |
| AgsI | TTSAA | 5 cut(s) | 117, 164, 542, 617, 667 |
| AjnI | CCWGG | 1 cut(s) | 595 |
| AluBI | AGCT | 8 cut(s) | 70, 113, 128, 184, 239, 421, 431, 704 |
| AluI | AGCT | 8 cut(s) | 70, 113, 128, 184, 239, 421, 431, 704 |
| Alw26I | GTCTC | 1 cut(s) | 74 |
| AlwI | GGATC | 2 cut(s) | 394, 504 |
| Ama87I | CYCGRG | 1 cut(s) | 672 |
| ApeKI | GCWGC | 2 cut(s) | 222, 286 |
| ApoI | RAATTY | 2 cut(s) | 55, 165 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 734 |
| AsuC2I | CCSGG | 2 cut(s) | 673, 674 |
| AsuHPI | GGTGA | 4 cut(s) | 119, 266, 652, 787 |
| AvaI | CYCGRG | 1 cut(s) | 672 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 445, 477 |
| BbvI | GCAGC | 2 cut(s) | 209, 273 |
| BccI | CCATC | 1 cut(s) | 14 |
| BciT130I | CCWGG | 1 cut(s) | 597 |
| BciVI | GTATCC | 1 cut(s) | 602 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcnI | CCSGG | 2 cut(s) | 673, 674 |
| BcoDI | GTCTC | 1 cut(s) | 74 |
| BfuI | GTATCC | 1 cut(s) | 602 |
| BisI | GCNGC | 2 cut(s) | 223, 287 |
| BlsI | GCNGC | 2 cut(s) | 224, 288 |
| Bme1390I | CCNGG | 3 cut(s) | 597, 673, 674 |
| BmeT110I | CYCGRG | 1 cut(s) | 672 |
| BmiI | GGNNCC | 1 cut(s) | 318 |
| BmrFI | CCNGG | 3 cut(s) | 597, 673, 674 |
| BpmI | CTGGAG | 2 cut(s) | 163, 793 |
| BpuMI | CCSGG | 2 cut(s) | 673, 674 |
| Bsa29I | ATCGAT | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 4 cut(s) | 595, 596, 671, 672 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 637, 667, 791 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 329, 601, 602 |
| Bse1I | ACTGG | 1 cut(s) | 810 |
| BseBI | CCWGG | 1 cut(s) | 597 |
| BseCI | ATCGAT | 1 cut(s) | 783 |
| BseDI | CCNNGG | 4 cut(s) | 595, 596, 671, 672 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 329, 601, 602 |
| BseNI | ACTGG | 1 cut(s) | 810 |
| BseXI | GCAGC | 2 cut(s) | 209, 273 |
| BsgI | GTGCAG | 1 cut(s) | 535 |
| BshVI | ATCGAT | 1 cut(s) | 783 |
| BsiHKCI | CYCGRG | 1 cut(s) | 672 |
| BsiSI | CCGG | 1 cut(s) | 673 |
| BslFI | GGGAC | 2 cut(s) | 171, 613 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 329, 601, 602 |
| BsmAI | GTCTC | 1 cut(s) | 74 |
| BsmBI | CGTCTC | 1 cut(s) | 74 |
| BsmFI | GGGAC | 2 cut(s) | 171, 613 |
| BsmI | GAATGC | 1 cut(s) | 683 |
| BsoBI | CYCGRG | 1 cut(s) | 672 |
| Bsp1407I | TGTACA | 1 cut(s) | 336 |
| Bsp143I | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| BspACI | CCGC | 2 cut(s) | 494, 560 |
| BspDI | ATCGAT | 1 cut(s) | 783 |
| BspLI | GGNNCC | 1 cut(s) | 318 |
| BspPI | GGATC | 2 cut(s) | 394, 504 |
| BsrGI | TGTACA | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 810 |
| BssECI | CCNNGG | 4 cut(s) | 595, 596, 671, 672 |
| BssMI | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| Bst2UI | CCWGG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 2 cut(s) | 376, 466 |
| BstAUI | TGTACA | 1 cut(s) | 336 |
| BstDEI | CTNAG | 1 cut(s) | 610 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstKTI | GATC | 5 cut(s) | 12, 180, 279, 402, 499 |
| BstMAI | GTCTC | 1 cut(s) | 74 |
| BstMBI | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 760 |
| BstNI | CCWGG | 1 cut(s) | 597 |
| BstSCI | CCNGG | 3 cut(s) | 595, 671, 672 |
| BstV1I | GCAGC | 2 cut(s) | 209, 273 |
| BstX2I | RGATCY | 1 cut(s) | 496 |
| BstYI | RGATCY | 1 cut(s) | 496 |
| Bsu15I | ATCGAT | 1 cut(s) | 783 |
| BsuI | GTATCC | 1 cut(s) | 602 |
| BsuTUI | ATCGAT | 1 cut(s) | 783 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 2 cut(s) | 19, 81 |
| Cfr9I | CCCGGG | 1 cut(s) | 672 |
| ClaI | ATCGAT | 1 cut(s) | 783 |
| CseI | GACGC | 1 cut(s) | 554 |
| Csp6I | GTAC | 2 cut(s) | 46, 337 |
| CviAII | CATG | 5 cut(s) | 206, 219, 324, 695, 749 |
| CviQI | GTAC | 2 cut(s) | 46, 337 |
| DdeI | CTNAG | 1 cut(s) | 610 |
| DpnI | GATC | 5 cut(s) | 11, 179, 278, 401, 498 |
| DpnII | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| DraI | TTTAAA | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 2 cut(s) | 376, 466 |
| EarI | CTCTTC | 2 cut(s) | 376, 466 |
| Eco88I | CYCGRG | 1 cut(s) | 672 |
| EcoRII | CCWGG | 1 cut(s) | 595 |
| Esp3I | CGTCTC | 1 cut(s) | 74 |
| FaeI | CATG | 5 cut(s) | 209, 222, 327, 698, 752 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 405, 437 |
| FaqI | GGGAC | 2 cut(s) | 171, 613 |
| FatI | CATG | 5 cut(s) | 205, 218, 323, 694, 748 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| Fnu4HI | GCNGC | 2 cut(s) | 223, 287 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 2 cut(s) | 223, 287 |
| GluI | GCNGC | 2 cut(s) | 223, 287 |
| GsuI | CTGGAG | 2 cut(s) | 163, 793 |
| HapII | CCGG | 1 cut(s) | 673 |
| HgaI | GACGC | 1 cut(s) | 554 |
| Hin1II | CATG | 5 cut(s) | 209, 222, 327, 698, 752 |
| HindIII | AAGCTT | 3 cut(s) | 111, 182, 237 |
| HinfI | GANTC | 2 cut(s) | 364, 785 |
| HpaII | CCGG | 1 cut(s) | 673 |
| HphI | GGTGA | 4 cut(s) | 119, 266, 652, 787 |
| Hpy166II | GTNNAC | 2 cut(s) | 48, 337 |
| Hpy188I | TCNGA | 3 cut(s) | 404, 583, 790 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 2 cut(s) | 48, 337 |
| HpyAV | CCTTC | 3 cut(s) | 224, 323, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 5 cut(s) | 225, 289, 552, 650, 681 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 760 |
| HpyF3I | CTNAG | 1 cut(s) | 610 |
| Hsp92II | CATG | 5 cut(s) | 209, 222, 327, 698, 752 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| LmnI | GCTCC | 1 cut(s) | 428 |
| LpnPI | CCDG | 7 cut(s) | 45, 127, 543, 582, 609, 644, 686 |
| Lsp1109I | GCAGC | 2 cut(s) | 209, 273 |
| MaeIII | GTNAC | 3 cut(s) | 469, 658, 797 |
| MalI | GATC | 5 cut(s) | 11, 179, 278, 401, 498 |
| MboI | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| MboII | GAAGA | 5 cut(s) | 29, 390, 393, 453, 629 |
| MflI | RGATCY | 1 cut(s) | 496 |
| MluCI | AATT | 4 cut(s) | 55, 165, 310, 770 |
| MmeI | TCCRAC | 1 cut(s) | 623 |
| MnlI | CCTC | 6 cut(s) | 259, 330, 377, 550, 589, 595 |
| MroXI | GAANNNNTTC | 1 cut(s) | 734 |
| MseI | TTAA | 3 cut(s) | 261, 369, 814 |
| MspI | CCGG | 1 cut(s) | 673 |
| MspR9I | CCNGG | 3 cut(s) | 597, 673, 674 |
| Mva1269I | GAATGC | 1 cut(s) | 683 |
| MvaI | CCWGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 760 |
| NciI | CCSGG | 2 cut(s) | 673, 674 |
| NdeII | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| NlaIII | CATG | 5 cut(s) | 209, 222, 327, 698, 752 |
| NlaIV | GGNNCC | 1 cut(s) | 318 |
| NmuCI | GTSAC | 1 cut(s) | 658 |
| PasI | CCCWGGG | 1 cut(s) | 596 |
| PctI | GAATGC | 1 cut(s) | 683 |
| PdmI | GAANNNNTTC | 1 cut(s) | 734 |
| PfeI | GAWTC | 2 cut(s) | 364, 785 |
| PkrI | GCNGC | 2 cut(s) | 224, 288 |
| Psp6I | CCWGG | 1 cut(s) | 595 |
| PspGI | CCWGG | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 1 cut(s) | 318 |
| PsuI | RGATCY | 1 cut(s) | 496 |
| RsaI | GTAC | 2 cut(s) | 47, 338 |
| RsaNI | GTAC | 2 cut(s) | 46, 337 |
| SaqAI | TTAA | 3 cut(s) | 261, 369, 814 |
| SatI | GCNGC | 2 cut(s) | 223, 287 |
| Sau3AI | GATC | 5 cut(s) | 9, 177, 276, 399, 496 |
| ScrFI | CCNGG | 3 cut(s) | 597, 673, 674 |
| SmaI | CCCGGG | 1 cut(s) | 674 |
| Sse9I | AATT | 4 cut(s) | 55, 165, 310, 770 |
| SsiI | CCGC | 2 cut(s) | 494, 560 |
| SspI | AATATT | 1 cut(s) | 103 |
| StyD4I | CCNGG | 3 cut(s) | 595, 671, 672 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TaqI | TCGA | 1 cut(s) | 783 |
| TasI | AATT | 4 cut(s) | 55, 165, 310, 770 |
| TatI | WGTACW | 1 cut(s) | 336 |
| TfiI | GAWTC | 2 cut(s) | 364, 785 |
| Tru1I | TTAA | 3 cut(s) | 261, 369, 814 |
| Tru9I | TTAA | 3 cut(s) | 261, 369, 814 |
| TscAI | CASTG | 2 cut(s) | 19, 81 |
| TseFI | GTSAC | 1 cut(s) | 658 |
| TseI | GCWGC | 2 cut(s) | 222, 286 |
| Tsp45I | GTSAC | 1 cut(s) | 658 |
| TspDTI | ATGAA | 3 cut(s) | 138, 700, 735 |
| TspGWI | ACGGA | 1 cut(s) | 98 |
| TspMI | CCCGGG | 1 cut(s) | 672 |
| TspRI | CASTG | 2 cut(s) | 19, 81 |
| XapI | RAATTY | 2 cut(s) | 55, 165 |
| XmaI | CCCGGG | 1 cut(s) | 672 |
| XmnI | GAANNNNTTC | 1 cut(s) | 734 |