FvH4_2g13111

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000072
Physical Location & Seq
Reverse (-)
11496888 .. 11498309
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13111.t1

Sequence Viewer

Length: 1332 bp
ATGGAAGCTAGGGAGGGGAGGGGTGCCTCCTTGATTTGGAAAAGCTTGGTGTGGGGAAAAGAAGTTTTAGAGTTGGGGATGAGATGGAGGATTGGTAATGGGCAGCTCGTTAATGTTAAACGGGATAAATGGGTTCCTCAACCACTCCTTAAAATTGTGACGCCAGGAGCAGACTTATGGCAGGCGAAAGTGGCTGATTTCAATGAGCCGGGAGTTGGGTGGAAGGTAAATTTGGTGAAGTCAAGATTTTTGGACTTTGAAGCTCAATTAATCCTTTCGATCCCACTCCCTAAGTGGGACTGCAATGACAAATGTATTTGGCATTACAATAAGAATGGGCGGTACTCTGTGAAGTCGGGCTATTGGGTTGCTGATCAAGAAAGAATGAGGTTAGAGGGAGGGATGGAGGCAGGAAGTAGGATGGGTTCTGATAATGTGGTTCAGAAGGGATGGAAGAAACTGTGGGGACTCCAGGTGCCAATTAAAATAAAAGTGTTTATGTGGAGAGCGTGCAATAATTTTATTCCTTGTGGTTTGGAGCTGTGGAGGAGGAAAATAGGGGATTGTAGAAGGGGGGTATGCAAAGTGTGGAAAGAGAAAGATGTCTTCGGTCTATTTCTTCATGTTGCAATGGTGGCAGTAGGTAAGGAGCTTGAATGGTTTTGTGTTGTGGCTTGGCATCTTTGGCATGATAGAAACAACTGTGTTCATGGCAAGGAAGTAGTCTCGGTTGATGTCTTGGTTCGAAATGTGGTGTCCTGGTGGGAGAGGTTAGAAGGAGTTGACGAGAGAAACACAAATCCAAGCTCTGCAAATCATAGTAATAATGGAGTTAGAGAGACTATAAGATGGAGCAAACCCAGATCAGGGTTTATAAAGCTTAACATTGACGGGGCTATTGATACTCATGAAGGGGTCTTTGGTACTGGTGCAGTGTGTAGGAATGACCAAGGTCACTGCTTAGGAGTTTTGGCTGCTCCAGGGACGGGGTATCTAAGTCCTCACGCAGTAGAAGTGATGGCGTTGGTTCATGGTTTGTATTTTTGTCGAAGCGCTGGGTTTACTCACATAGAGATTGAGGGAGATGCCATGAGTGTATTTGCAGCTTTGGATAACTCAGTAGATGACTTTAGTAATGAAGGTGCCCTTTTGGACGAAGCAAAGGTTCTTATAAATTCTTTTCAGTATCGTAGTTGGGGTTTCATTCCTAGAGATGGAAATAAGGCAGCTCATATGGTCGCCAGAGCGGCTTTATTCCTCCCTCATCCAACATACTGGTGGCAGCTTGTTCCAGACTGGTTAGCTCCTACTATTGCTAATGAGTCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

444

Amino Acids

50.18

Weight (kDa)

8.67

Isoelectric Point (pI)

25.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 295 - 417 7.1e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 875, 1172
AccB1I GGYRCC 3 cut(s) 23, 475, 1142
AccBSI CCGCTC 1 cut(s) 1247
AciI CCGC 2 cut(s) 340, 1247
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 229, 1174
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 344, 925
AfeI AGCGCT 1 cut(s) 1054
AfiI CCNNNNNNNGG 7 cut(s) 36, 215, 295, 866, 867, 986, 1214
AgsI TTSAA 3 cut(s) 202, 260, 656
AjnI CCWGG 4 cut(s) 163, 471, 758, 979
AjuI GAANNNNNNNTTGG 4 cut(s) 215, 247, 903, 935
Alw26I GTCTC 2 cut(s) 730, 833
AlwI GGATC 1 cut(s) 274
Aor51HI AGCGCT 1 cut(s) 1054
ApeKI GCWGC 5 cut(s) 103, 974, 1103, 1226, 1282
ApoI RAATTY 2 cut(s) 229, 1174
AseI ATTAAT 1 cut(s) 269
AspLEI GCGC 1 cut(s) 1055
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 1147
BanI GGYRCC 3 cut(s) 23, 475, 1142
BbsI GAAGAC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 115, 961, 1115, 1238, 1294
BccI CCATC 7 cut(s) 78, 397, 415, 444, 843, 1012, 1208
BciT130I CCWGG 4 cut(s) 165, 473, 760, 981
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 730, 833
BfaI CTAG 2 cut(s) 9, 1209
BfoI RGCGCY 1 cut(s) 1056
BglI GCCNNNNNGGC 1 cut(s) 1247
BisI GCNGC 6 cut(s) 104, 975, 1104, 1227, 1248, 1283
BlsI GCNGC 6 cut(s) 105, 976, 1105, 1228, 1249, 1284
Bme1390I CCNGG 5 cut(s) 165, 210, 473, 760, 981
BmiI GGNNCC 4 cut(s) 25, 135, 477, 1144
BmrFI CCNGG 5 cut(s) 165, 210, 473, 760, 981
BmsI GCATC 2 cut(s) 688, 1075
BoxI GACNNNNGTC 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 598
BpmI CTGGAG 2 cut(s) 455, 963
Bpu10I CCTNAGC 1 cut(s) 961
Bpu14I TTCGAA 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 949, 980
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 215, 295, 866, 867, 986, 1214
Bse1I ACTGG 3 cut(s) 931, 1280, 1301
Bse3DI GCAATG 2 cut(s) 310, 636
BseBI CCWGG 4 cut(s) 165, 473, 760, 981
BseDI CCNNGG 2 cut(s) 949, 980
BseGI GGATG 5 cut(s) 84, 408, 426, 455, 1264
BseLI CCNNNNNNNGG 7 cut(s) 36, 215, 295, 866, 867, 986, 1214
BseMI GCAATG 2 cut(s) 310, 636
BseMII CTCAG 1 cut(s) 1131
BseNI ACTGG 3 cut(s) 931, 1280, 1301
BseRI GAGGAG 1 cut(s) 562
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 5 cut(s) 115, 961, 1115, 1238, 1294
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 951
BshNI GGYRCC 3 cut(s) 23, 475, 1142
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 3 cut(s) 311, 480, 997
BslI CCNNNNNNNGG 7 cut(s) 36, 215, 295, 866, 867, 986, 1214
BsmAI GTCTC 2 cut(s) 730, 833
BsmFI GGGAC 3 cut(s) 311, 480, 997
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 1147
Bsp143I GATC 3 cut(s) 279, 373, 863
BspACI CCGC 2 cut(s) 340, 1247
BspCNI CTCAG 1 cut(s) 1130
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 4 cut(s) 25, 135, 477, 1144
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 745
BspT107I GGYRCC 3 cut(s) 23, 475, 1142
BsrBI CCGCTC 1 cut(s) 1247
BsrDI GCAATG 2 cut(s) 310, 636
BsrI ACTGG 3 cut(s) 931, 1280, 1301
BssECI CCNNGG 2 cut(s) 949, 980
BssMI GATC 3 cut(s) 279, 373, 863
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 949
Bst2UI CCWGG 4 cut(s) 165, 473, 760, 981
Bst4CI ACNGT 2 cut(s) 462, 704
BstACI GRCGYC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 183, 511
BstDEI CTNAG 4 cut(s) 291, 961, 995, 1117
BstF5I GGATG 5 cut(s) 84, 408, 426, 455, 1264
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 3 cut(s) 282, 376, 866
BstMAI GTCTC 2 cut(s) 730, 833
BstMBI GATC 3 cut(s) 279, 373, 863
BstMWI GCNNNNNNNGC 4 cut(s) 191, 635, 685, 1247
BstNI CCWGG 4 cut(s) 165, 473, 760, 981
BstPAI GACNNNNGTC 1 cut(s) 951
BstSCI CCNGG 5 cut(s) 163, 208, 471, 758, 979
BstSLI GKGCMC 1 cut(s) 1147
BstV1I GCAGC 5 cut(s) 115, 961, 1115, 1238, 1294
BstV2I GAAGAC 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 1275
BtsCI GGATG 5 cut(s) 84, 408, 426, 455, 1264
BtsI GCAGTG 2 cut(s) 939, 955
BtsIMutI CAGTG 3 cut(s) 939, 955, 1332
Cac8I GCNNGC 2 cut(s) 183, 511
CciI TCATGA 1 cut(s) 907
CfoI GCGC 1 cut(s) 1055
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 343, 924
CviAII CATG 6 cut(s) 623, 689, 710, 908, 1031, 1090
CviQI GTAC 2 cut(s) 343, 924
DdeI CTNAG 4 cut(s) 291, 961, 995, 1117
DpnI GATC 3 cut(s) 281, 375, 865
DpnII GATC 3 cut(s) 279, 373, 863
Eco130I CCWWGG 1 cut(s) 949
Eco47III AGCGCT 1 cut(s) 1054
EcoRII CCWGG 4 cut(s) 163, 471, 758, 979
EcoT14I CCWWGG 1 cut(s) 949
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 6 cut(s) 626, 692, 713, 911, 1034, 1093
FalI AAGNNNNNCTT 2 cut(s) 1131, 1163
FaqI GGGAC 3 cut(s) 311, 480, 997
FatI CATG 6 cut(s) 622, 688, 709, 907, 1030, 1089
FauNDI CATATG 1 cut(s) 1233
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 6 cut(s) 104, 975, 1104, 1227, 1248, 1283
FokI GGATG 5 cut(s) 91, 415, 433, 462, 1251
Fsp4HI GCNGC 6 cut(s) 104, 975, 1104, 1227, 1248, 1283
FspBI CTAG 2 cut(s) 9, 1209
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 6 cut(s) 104, 975, 1104, 1227, 1248, 1283
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 2 cut(s) 455, 963
HaeII RGCGCY 1 cut(s) 1056
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 1055
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 6 cut(s) 626, 692, 713, 911, 1034, 1093
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 2 cut(s) 43, 878
HinfI GANTC 2 cut(s) 468, 1322
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 784, 1062
Hpy188I TCNGA 2 cut(s) 430, 444
Hpy188III TCNNGA 4 cut(s) 243, 377, 908, 1292
Hpy8I GTNNAC 2 cut(s) 784, 1062
HpyAV CCTTC 6 cut(s) 217, 439, 564, 770, 905, 1133
HpyCH4III ACNGT 2 cut(s) 462, 704
HpyCH4V TGCA 7 cut(s) 303, 513, 582, 629, 812, 932, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 635, 685, 1247
HpyF3I CTNAG 4 cut(s) 291, 961, 995, 1117
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 6 cut(s) 626, 692, 713, 911, 1034, 1093
HspAI GCGC 1 cut(s) 1053
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 279, 373, 863
LmnI GCTCC 6 cut(s) 167, 538, 649, 852, 982, 1309
Lsp1109I GCAGC 5 cut(s) 115, 961, 1115, 1238, 1294
LweI GCATC 2 cut(s) 688, 1075
MaeI CTAG 2 cut(s) 9, 1209
MaeIII GTNAC 2 cut(s) 157, 953
MalI GATC 3 cut(s) 281, 375, 865
MbiI CCGCTC 1 cut(s) 1247
MboI GATC 3 cut(s) 279, 373, 863
MboII GAAGA 3 cut(s) 466, 598, 611
MhlI GDGCHC 1 cut(s) 1147
MluCI AATT 6 cut(s) 153, 229, 266, 480, 517, 1174
MlyI GAGTC 2 cut(s) 462, 1331
MmeI TCCRAC 1 cut(s) 1292
MseI TTAA 6 cut(s) 111, 117, 150, 269, 483, 882
MslI CAYNNNNRTG 1 cut(s) 1276
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 5 cut(s) 165, 210, 473, 760, 981
MvaI CCWGG 4 cut(s) 165, 473, 760, 981
MwoI GCNNNNNNNGC 4 cut(s) 191, 635, 685, 1247
NciI CCSGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 1233
NdeII GATC 3 cut(s) 279, 373, 863
NlaIII CATG 6 cut(s) 626, 692, 713, 911, 1034, 1093
NlaIV GGNNCC 4 cut(s) 25, 135, 477, 1144
NmuCI GTSAC 2 cut(s) 157, 953
NspV TTCGAA 1 cut(s) 745
PagI TCATGA 1 cut(s) 907
PkrI GCNGC 6 cut(s) 105, 976, 1105, 1228, 1249, 1284
PleI GAGTC 2 cut(s) 462, 1330
PpsI GAGTC 2 cut(s) 462, 1330
PshAI GACNNNNGTC 1 cut(s) 951
PshBI ATTAAT 1 cut(s) 269
PsiI TTATAA 2 cut(s) 875, 1172
Psp6I CCWGG 4 cut(s) 163, 471, 758, 979
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 4 cut(s) 163, 471, 758, 979
PspN4I GGNNCC 4 cut(s) 25, 135, 477, 1144
PsrI GAACNNNNNNTAC 2 cut(s) 409, 441
RsaI GTAC 2 cut(s) 344, 925
RsaNI GTAC 2 cut(s) 343, 924
RseI CAYNNNNRTG 1 cut(s) 1276
SaqAI TTAA 6 cut(s) 111, 117, 150, 269, 483, 882
SatI GCNGC 6 cut(s) 104, 975, 1104, 1227, 1248, 1283
Sau3AI GATC 3 cut(s) 279, 373, 863
SchI GAGTC 2 cut(s) 462, 1331
ScrFI CCNGG 5 cut(s) 165, 210, 473, 760, 981
SduI GDGCHC 1 cut(s) 1147
SfaNI GCATC 2 cut(s) 688, 1075
SfuI TTCGAA 1 cut(s) 745
SmiMI CAYNNNNRTG 1 cut(s) 1276
Sse9I AATT 6 cut(s) 153, 229, 266, 480, 517, 1174
SsiI CCGC 2 cut(s) 340, 1247
SspMI CTAG 2 cut(s) 9, 1209
StyD4I CCNGG 5 cut(s) 163, 208, 471, 758, 979
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 2 cut(s) 462, 704
TaqI TCGA 3 cut(s) 278, 745, 1048
TaqII GACCGA 1 cut(s) 599
TasI AATT 6 cut(s) 153, 229, 266, 480, 517, 1174
TauI GCSGC 1 cut(s) 1250
Tru1I TTAA 6 cut(s) 111, 117, 150, 269, 483, 882
Tru9I TTAA 6 cut(s) 111, 117, 150, 269, 483, 882
TscAI CASTG 3 cut(s) 939, 962, 1332
TseFI GTSAC 2 cut(s) 157, 953
TseI GCWGC 5 cut(s) 103, 974, 1103, 1226, 1282
Tsp45I GTSAC 2 cut(s) 157, 953
TspDTI ATGAA 6 cut(s) 611, 698, 924, 1019, 1152, 1192
TspRI CASTG 3 cut(s) 939, 962, 1332
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 2 cut(s) 229, 1174
XcmI CCANNNNNNNNNTGG 2 cut(s) 291, 1275
XspI CTAG 2 cut(s) 9, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.