ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 77 - 198 | 9.2e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 650 |
| AciI | CCGC | 1 cut(s) | 254 |
| AclWI | GGATC | 1 cut(s) | 264 |
| AcsI | RAATTY | 1 cut(s) | 136 |
| AdeI | CACNNNGTG | 1 cut(s) | 604 |
| AfaI | GTAC | 1 cut(s) | 549 |
| AgsI | TTSAA | 2 cut(s) | 382, 527 |
| AluBI | AGCT | 4 cut(s) | 299, 385, 397, 611 |
| AluI | AGCT | 4 cut(s) | 299, 385, 397, 611 |
| AlwI | GGATC | 1 cut(s) | 264 |
| AoxI | GGCC | 2 cut(s) | 55, 634 |
| ApeKI | GCWGC | 4 cut(s) | 191, 251, 394, 446 |
| ApoI | RAATTY | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 3 cut(s) | 113, 127, 427 |
| BanII | GRGCYC | 1 cut(s) | 313 |
| BbvI | GCAGC | 4 cut(s) | 178, 238, 406, 433 |
| BccI | CCATC | 2 cut(s) | 227, 287 |
| BfaI | CTAG | 4 cut(s) | 59, 305, 537, 585 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 642 |
| BisI | GCNGC | 4 cut(s) | 192, 252, 395, 447 |
| BlsI | GCNGC | 4 cut(s) | 193, 253, 396, 448 |
| BmrI | ACTGGG | 1 cut(s) | 120 |
| BmsI | GCATC | 3 cut(s) | 152, 418, 487 |
| BmuI | ACTGGG | 1 cut(s) | 120 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 163, 195 |
| BsaAI | YACGTR | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 1 cut(s) | 640 |
| Bse1I | ACTGG | 2 cut(s) | 115, 417 |
| Bse3DI | GCAATG | 2 cut(s) | 324, 332 |
| BseDI | CCNNGG | 1 cut(s) | 640 |
| BseGI | GGATG | 2 cut(s) | 298, 502 |
| BseMI | GCAATG | 2 cut(s) | 324, 332 |
| BseNI | ACTGG | 2 cut(s) | 115, 417 |
| BseRI | GAGGAG | 1 cut(s) | 501 |
| BseXI | GCAGC | 4 cut(s) | 178, 238, 406, 433 |
| Bsh1236I | CGCG | 1 cut(s) | 650 |
| BshFI | GGCC | 2 cut(s) | 57, 636 |
| BsiSI | CCGG | 1 cut(s) | 633 |
| BsnI | GGCC | 2 cut(s) | 57, 636 |
| Bsp1286I | GDGCHC | 1 cut(s) | 313 |
| Bsp143I | GATC | 3 cut(s) | 157, 256, 469 |
| BspACI | CCGC | 1 cut(s) | 254 |
| BspANI | GGCC | 2 cut(s) | 57, 636 |
| BspFNI | CGCG | 1 cut(s) | 650 |
| BspMAI | CTGCAG | 1 cut(s) | 196 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BsrDI | GCAATG | 2 cut(s) | 324, 332 |
| BsrI | ACTGG | 2 cut(s) | 115, 417 |
| BssECI | CCNNGG | 1 cut(s) | 640 |
| BssMI | GATC | 3 cut(s) | 157, 256, 469 |
| BssT1I | CCWWGG | 1 cut(s) | 640 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 428, 604 |
| BstBAI | YACGTR | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 2 cut(s) | 424, 609 |
| BstDEI | CTNAG | 2 cut(s) | 473, 624 |
| BstF5I | GGATG | 2 cut(s) | 298, 502 |
| BstFNI | CGCG | 1 cut(s) | 650 |
| BstKTI | GATC | 3 cut(s) | 160, 259, 472 |
| BstMBI | GATC | 3 cut(s) | 157, 256, 469 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 356, 391, 428, 590, 604, 642 |
| BstNSI | RCATGY | 2 cut(s) | 426, 548 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstSNI | TACGTA | 1 cut(s) | 551 |
| BstUI | CGCG | 1 cut(s) | 650 |
| BstV1I | GCAGC | 4 cut(s) | 178, 238, 406, 433 |
| BsuRI | GGCC | 2 cut(s) | 57, 636 |
| BtgZI | GCGATG | 1 cut(s) | 441 |
| BtsCI | GGATG | 2 cut(s) | 298, 502 |
| BtsI | GCAGTG | 2 cut(s) | 157, 282 |
| BtsIMutI | CAGTG | 2 cut(s) | 157, 282 |
| Cac8I | GCNNGC | 2 cut(s) | 424, 609 |
| Csp6I | GTAC | 1 cut(s) | 548 |
| CviAII | CATG | 5 cut(s) | 347, 374, 423, 545, 601 |
| CviQI | GTAC | 1 cut(s) | 548 |
| DdeI | CTNAG | 2 cut(s) | 473, 624 |
| DpnI | GATC | 3 cut(s) | 159, 258, 471 |
| DpnII | GATC | 3 cut(s) | 157, 256, 469 |
| DraI | TTTAAA | 1 cut(s) | 285 |
| DraIII | CACNNNGTG | 1 cut(s) | 604 |
| Eco105I | TACGTA | 1 cut(s) | 551 |
| Eco130I | CCWWGG | 1 cut(s) | 640 |
| Eco147I | AGGCCT | 1 cut(s) | 57 |
| Eco24I | GRGCYC | 1 cut(s) | 313 |
| Eco32I | GATATC | 1 cut(s) | 481 |
| EcoRV | GATATC | 1 cut(s) | 481 |
| EcoT14I | CCWWGG | 1 cut(s) | 640 |
| EcoT38I | GRGCYC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 1 cut(s) | 640 |
| FaeI | CATG | 5 cut(s) | 350, 377, 426, 548, 604 |
| FatI | CATG | 5 cut(s) | 346, 373, 422, 544, 600 |
| Fnu4HI | GCNGC | 4 cut(s) | 192, 252, 395, 447 |
| FokI | GGATG | 2 cut(s) | 305, 509 |
| FriOI | GRGCYC | 1 cut(s) | 313 |
| Fsp4HI | GCNGC | 4 cut(s) | 192, 252, 395, 447 |
| FspBI | CTAG | 4 cut(s) | 59, 305, 537, 585 |
| GluI | GCNGC | 4 cut(s) | 192, 252, 395, 447 |
| HaeIII | GGCC | 2 cut(s) | 57, 636 |
| HapII | CCGG | 1 cut(s) | 633 |
| Hin1II | CATG | 5 cut(s) | 350, 377, 426, 548, 604 |
| HindIII | AAGCTT | 1 cut(s) | 383 |
| HinfI | GANTC | 1 cut(s) | 73 |
| HpaII | CCGG | 1 cut(s) | 633 |
| HphI | GGTGA | 3 cut(s) | 113, 127, 427 |
| Hpy188I | TCNGA | 2 cut(s) | 261, 485 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 182 |
| HpyAV | CCTTC | 1 cut(s) | 582 |
| HpyCH4IV | ACGT | 2 cut(s) | 119, 550 |
| HpyCH4V | TGCA | 9 cut(s) | 194, 205, 317, 332, 350, 431, 500, 598, 607 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 356, 391, 428, 590, 604, 642 |
| HpyF3I | CTNAG | 2 cut(s) | 473, 624 |
| HpySE526I | ACGT | 2 cut(s) | 119, 550 |
| Hsp92II | CATG | 5 cut(s) | 350, 377, 426, 548, 604 |
| Kzo9I | GATC | 3 cut(s) | 157, 256, 469 |
| LmnI | GCTCC | 3 cut(s) | 208, 272, 296 |
| LpnPI | CCDG | 9 cut(s) | 83, 96, 146, 180, 191, 197, 398, 442, 646 |
| Lsp1109I | GCAGC | 4 cut(s) | 178, 238, 406, 433 |
| LweI | GCATC | 3 cut(s) | 152, 418, 487 |
| MaeI | CTAG | 4 cut(s) | 59, 305, 537, 585 |
| MaeII | ACGT | 2 cut(s) | 119, 550 |
| MaeIII | GTNAC | 4 cut(s) | 41, 115, 532, 557 |
| MalI | GATC | 3 cut(s) | 159, 258, 471 |
| MboI | GATC | 3 cut(s) | 157, 256, 469 |
| MfeI | CAATTG | 2 cut(s) | 351, 509 |
| MhlI | GDGCHC | 1 cut(s) | 313 |
| MluCI | AATT | 6 cut(s) | 82, 136, 220, 351, 509, 653 |
| MnlI | CCTC | 7 cut(s) | 28, 158, 191, 208, 349, 479, 647 |
| MseI | TTAA | 2 cut(s) | 219, 284 |
| MspI | CCGG | 1 cut(s) | 633 |
| MunI | CAATTG | 2 cut(s) | 351, 509 |
| MvnI | CGCG | 1 cut(s) | 650 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 356, 391, 428, 590, 604, 642 |
| NdeII | GATC | 3 cut(s) | 157, 256, 469 |
| NlaIII | CATG | 5 cut(s) | 350, 377, 426, 548, 604 |
| NmuCI | GTSAC | 2 cut(s) | 41, 115 |
| NspI | RCATGY | 2 cut(s) | 426, 548 |
| PaeI | GCATGC | 1 cut(s) | 426 |
| PceI | AGGCCT | 1 cut(s) | 57 |
| PfeI | GAWTC | 1 cut(s) | 73 |
| PkrI | GCNGC | 4 cut(s) | 193, 253, 396, 448 |
| Ppu21I | YACGTR | 1 cut(s) | 551 |
| PstI | CTGCAG | 1 cut(s) | 196 |
| RsaI | GTAC | 1 cut(s) | 549 |
| RsaNI | GTAC | 1 cut(s) | 548 |
| SaqAI | TTAA | 2 cut(s) | 219, 284 |
| SatI | GCNGC | 4 cut(s) | 192, 252, 395, 447 |
| Sau3AI | GATC | 3 cut(s) | 157, 256, 469 |
| SduI | GDGCHC | 1 cut(s) | 313 |
| SetI | ASST | 9 cut(s) | 39, 122, 202, 219, 301, 387, 399, 553, 613 |
| SfaNI | GCATC | 3 cut(s) | 152, 418, 487 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SnaBI | TACGTA | 1 cut(s) | 551 |
| SphI | GCATGC | 1 cut(s) | 426 |
| Sse9I | AATT | 6 cut(s) | 82, 136, 220, 351, 509, 653 |
| SseBI | AGGCCT | 1 cut(s) | 57 |
| SsiI | CCGC | 1 cut(s) | 254 |
| SspMI | CTAG | 4 cut(s) | 59, 305, 537, 585 |
| StuI | AGGCCT | 1 cut(s) | 57 |
| StyI | CCWWGG | 1 cut(s) | 640 |
| TaiI | ACGT | 2 cut(s) | 122, 553 |
| TaqI | TCGA | 1 cut(s) | 146 |
| TasI | AATT | 6 cut(s) | 82, 136, 220, 351, 509, 653 |
| TfiI | GAWTC | 1 cut(s) | 73 |
| Tru1I | TTAA | 2 cut(s) | 219, 284 |
| Tru9I | TTAA | 2 cut(s) | 219, 284 |
| TscAI | CASTG | 2 cut(s) | 157, 282 |
| TseFI | GTSAC | 2 cut(s) | 41, 115 |
| TseI | GCWGC | 4 cut(s) | 191, 251, 394, 446 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 115 |
| TspDTI | ATGAA | 1 cut(s) | 563 |
| TspRI | CASTG | 2 cut(s) | 157, 282 |
| XapI | RAATTY | 1 cut(s) | 136 |
| XceI | RCATGY | 2 cut(s) | 426, 548 |
| XspI | CTAG | 4 cut(s) | 59, 305, 537, 585 |