FvH4_2g01203

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000072
Physical Location & Seq
Reverse (-)
1155209 .. 1156151
943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01203.t1

Sequence Viewer

Length: 351 bp
ATGGCGAAGAATCCGTTCATGGCTGCAAAATCCCCTTCCATATTAAGTAGCGTTCATGTGCTTACTGCTCCTTCTACCCCTTCAGCATGGAAACCACCGACCCCTCGGTTCCTGAAGCTCAACTTTGACGGTGCAACAGATCATAAAAATGGCAACAGTGGTCTAGGGGCAGTGTTCCGAGACCATTTAGGTACTTTGATTGCTGCCCTGGCCATCCCAATTGTTGGCCTACTCCCTCCTAGAACTGTTGAGATTTTGGCTTTGTTATATGGCTTGCTGTTTGCTTCCCGTGCTTGTTTCTTTGCCTTGGAATTCGAAGGAGATGCTCCAAGTGTCACAAACACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

117

Amino Acids

12.26

Weight (kDa)

8.98

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 41 - 114 3.6e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 2 cut(s) 66, 134
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 224
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 2 cut(s) 210, 226
ApeKI GCWGC 2 cut(s) 23, 203
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 315
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 2 cut(s) 10, 190
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 164, 240
BisI GCNGC 2 cut(s) 24, 204
BlsI GCNGC 2 cut(s) 25, 205
Bme1390I CCNGG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 104, 207, 306
BsaXI ACNNNNNCTCC 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 104, 207, 306
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 10, 190
BshFI GGCC 2 cut(s) 212, 228
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 2 cut(s) 212, 228
Bso31I GGTCTC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 315
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 2 cut(s) 212, 228
BspLI GGNNCC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 104, 207, 306
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 131, 158, 247
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 275
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 209, 290
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 10, 190
BsuRI GGCC 2 cut(s) 212, 228
BtsCI GGATG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 163, 177
Cac8I GCNNGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 192
CviAII CATG 4 cut(s) 19, 56, 87, 348
CviJI RGCY 6 cut(s) 23, 118, 212, 228, 260, 273
CviKI_1 RGCY 6 cut(s) 23, 118, 212, 228, 260, 273
CviQI GTAC 1 cut(s) 192
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 174
Eco57I CTGAAG 2 cut(s) 66, 134
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 22, 59, 90, 351
FaiI YATR 8 cut(s) 20, 41, 57, 88, 144, 268, 270, 349
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 4 cut(s) 18, 55, 86, 347
Fnu4HI GCNGC 2 cut(s) 24, 204
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 24, 204
FspBI CTAG 2 cut(s) 164, 240
GluI GCNGC 2 cut(s) 24, 204
HaeIII GGCC 2 cut(s) 212, 228
Hin1II CATG 4 cut(s) 22, 59, 90, 351
HinfI GANTC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 45, 81, 90, 311
HpyCH4III ACNGT 3 cut(s) 131, 158, 247
HpyCH4V TGCA 2 cut(s) 26, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 290
Hsp92II CATG 4 cut(s) 22, 59, 90, 351
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 73, 331
LpnPI CCDG 3 cut(s) 125, 194, 221
Lsp1109I GCAGC 2 cut(s) 10, 190
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 164, 240
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 219, 311
MluNI TGGCCA 1 cut(s) 212
MnlI CCTC 2 cut(s) 114, 246
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 209, 290
NdeII GATC 1 cut(s) 139
NlaIII CATG 4 cut(s) 22, 59, 90, 351
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 2 cut(s) 25, 205
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 110
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 24, 204
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 209
SetI ASST 2 cut(s) 120, 193
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 2 cut(s) 219, 311
SspMI CTAG 2 cut(s) 164, 240
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 131, 158, 247
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 219, 311
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 2 cut(s) 163, 177
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 23, 203
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 7, 44
TspRI CASTG 2 cut(s) 163, 177
Van91I CCANNNNNTGG 1 cut(s) 224
XapI RAATTY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 164, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.