ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 49 - 161 | 5.4e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 204 |
| AccII | CGCG | 1 cut(s) | 447 |
| AcsI | RAATTY | 1 cut(s) | 178 |
| AcyI | GRCGYC | 1 cut(s) | 502 |
| AfaI | GTAC | 2 cut(s) | 313, 377 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 421 |
| AgsI | TTSAA | 2 cut(s) | 62, 389 |
| AjnI | CCWGG | 1 cut(s) | 488 |
| AluBI | AGCT | 2 cut(s) | 245, 420 |
| AluI | AGCT | 2 cut(s) | 245, 420 |
| Alw26I | GTCTC | 1 cut(s) | 30 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 320 |
| ApoI | RAATTY | 1 cut(s) | 178 |
| AseI | ATTAAT | 2 cut(s) | 185, 333 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| BanII | GRGCYC | 1 cut(s) | 528 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| BccI | CCATC | 3 cut(s) | 167, 276, 443 |
| BciT130I | CCWGG | 1 cut(s) | 490 |
| BcoDI | GTCTC | 1 cut(s) | 30 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfuAI | ACCTGC | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 1 cut(s) | 490 |
| BmrFI | CCNGG | 1 cut(s) | 490 |
| BmsI | GCATC | 1 cut(s) | 438 |
| BoxI | GACNNNNGTC | 1 cut(s) | 290 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaHI | GRCGYC | 1 cut(s) | 502 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 189, 219 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 421 |
| BseBI | CCWGG | 1 cut(s) | 490 |
| BseGI | GGATG | 1 cut(s) | 287 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 421 |
| Bsh1236I | CGCG | 1 cut(s) | 447 |
| BslFI | GGGAC | 2 cut(s) | 270, 397 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 421 |
| BsmAI | GTCTC | 1 cut(s) | 30 |
| BsmFI | GGGAC | 2 cut(s) | 270, 397 |
| Bsp1286I | GDGCHC | 1 cut(s) | 528 |
| Bsp1407I | TGTACA | 1 cut(s) | 311 |
| Bsp68I | TCGCGA | 1 cut(s) | 447 |
| BspFNI | CGCG | 1 cut(s) | 447 |
| BspHI | TCATGA | 2 cut(s) | 16, 72 |
| BspMI | ACCTGC | 1 cut(s) | 204 |
| BsrGI | TGTACA | 1 cut(s) | 311 |
| BssNI | GRCGYC | 1 cut(s) | 502 |
| Bst2UI | CCWGG | 1 cut(s) | 490 |
| Bst6I | CTCTTC | 1 cut(s) | 341 |
| BstACI | GRCGYC | 1 cut(s) | 502 |
| BstAUI | TGTACA | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 1 cut(s) | 211 |
| BstDEI | CTNAG | 2 cut(s) | 29, 416 |
| BstF5I | GGATG | 1 cut(s) | 287 |
| BstFNI | CGCG | 1 cut(s) | 447 |
| BstMAI | GTCTC | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 426 |
| BstNI | CCWGG | 1 cut(s) | 490 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 290 |
| BstSCI | CCNGG | 1 cut(s) | 488 |
| BstUI | CGCG | 1 cut(s) | 447 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BtgZI | GCGATG | 1 cut(s) | 462 |
| BtsCI | GGATG | 1 cut(s) | 287 |
| BtuMI | TCGCGA | 1 cut(s) | 447 |
| BveI | ACCTGC | 1 cut(s) | 204 |
| Cac8I | GCNNGC | 1 cut(s) | 211 |
| CaiI | CAGNNNCTG | 1 cut(s) | 320 |
| CciI | TCATGA | 2 cut(s) | 16, 72 |
| CseI | GACGC | 1 cut(s) | 491 |
| Csp6I | GTAC | 2 cut(s) | 312, 376 |
| CviAII | CATG | 7 cut(s) | 5, 17, 73, 290, 328, 467, 506 |
| CviJI | RGCY | 9 cut(s) | 33, 191, 209, 245, 320, 420, 464, 488, 526 |
| CviKI_1 | RGCY | 9 cut(s) | 33, 191, 209, 245, 320, 420, 464, 488, 526 |
| CviQI | GTAC | 2 cut(s) | 312, 376 |
| DdeI | CTNAG | 2 cut(s) | 29, 416 |
| Eam1104I | CTCTTC | 1 cut(s) | 341 |
| EarI | CTCTTC | 1 cut(s) | 341 |
| Eco24I | GRGCYC | 1 cut(s) | 528 |
| EcoRII | CCWGG | 1 cut(s) | 488 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 528 |
| FaeI | CATG | 7 cut(s) | 8, 20, 76, 293, 331, 470, 509 |
| FaqI | GGGAC | 2 cut(s) | 270, 397 |
| FatI | CATG | 7 cut(s) | 4, 16, 72, 289, 327, 466, 505 |
| FokI | GGATG | 1 cut(s) | 294 |
| FriOI | GRGCYC | 1 cut(s) | 528 |
| FspBI | CTAG | 1 cut(s) | 407 |
| HgaI | GACGC | 1 cut(s) | 491 |
| Hin1I | GRCGYC | 1 cut(s) | 502 |
| Hin1II | CATG | 7 cut(s) | 8, 20, 76, 293, 331, 470, 509 |
| HinfI | GANTC | 3 cut(s) | 286, 302, 410 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy188I | TCNGA | 1 cut(s) | 307 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 73, 382, 446 |
| HpyAV | CCTTC | 2 cut(s) | 44, 56 |
| HpyCH4IV | ACGT | 1 cut(s) | 378 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 429, 476 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 426 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 416 |
| HpySE526I | ACGT | 1 cut(s) | 378 |
| Hsp92I | GRCGYC | 1 cut(s) | 502 |
| Hsp92II | CATG | 7 cut(s) | 8, 20, 76, 293, 331, 470, 509 |
| LpnPI | CCDG | 5 cut(s) | 195, 199, 239, 475, 502 |
| LweI | GCATC | 1 cut(s) | 438 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeII | ACGT | 1 cut(s) | 378 |
| MboII | GAAGA | 5 cut(s) | 74, 115, 358, 424, 434 |
| MhlI | GDGCHC | 1 cut(s) | 528 |
| MluCI | AATT | 3 cut(s) | 178, 398, 471 |
| MlyI | GAGTC | 3 cut(s) | 280, 311, 419 |
| MnlI | CCTC | 5 cut(s) | 45, 93, 310, 342, 490 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 5 cut(s) | 47, 95, 185, 333, 532 |
| MspR9I | CCNGG | 1 cut(s) | 490 |
| MvaI | CCWGG | 1 cut(s) | 490 |
| MvnI | CGCG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 426 |
| NlaIII | CATG | 7 cut(s) | 8, 20, 76, 293, 331, 470, 509 |
| NruI | TCGCGA | 1 cut(s) | 447 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PagI | TCATGA | 2 cut(s) | 16, 72 |
| PleI | GAGTC | 3 cut(s) | 280, 310, 418 |
| PpsI | GAGTC | 3 cut(s) | 280, 310, 418 |
| PshAI | GACNNNNGTC | 1 cut(s) | 290 |
| PshBI | ATTAAT | 2 cut(s) | 185, 333 |
| Psp6I | CCWGG | 1 cut(s) | 488 |
| PspGI | CCWGG | 1 cut(s) | 488 |
| PstNI | CAGNNNCTG | 1 cut(s) | 320 |
| RruI | TCGCGA | 1 cut(s) | 447 |
| RsaI | GTAC | 2 cut(s) | 313, 377 |
| RsaNI | GTAC | 2 cut(s) | 312, 376 |
| SaqAI | TTAA | 5 cut(s) | 47, 95, 185, 333, 532 |
| SchI | GAGTC | 3 cut(s) | 280, 311, 419 |
| ScrFI | CCNGG | 1 cut(s) | 490 |
| SduI | GDGCHC | 1 cut(s) | 528 |
| SetI | ASST | 7 cut(s) | 67, 130, 218, 247, 381, 422, 486 |
| SfaNI | GCATC | 1 cut(s) | 438 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 3 cut(s) | 178, 398, 471 |
| SspMI | CTAG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 1 cut(s) | 488 |
| TaiI | ACGT | 1 cut(s) | 381 |
| TasI | AATT | 3 cut(s) | 178, 398, 471 |
| TatI | WGTACW | 1 cut(s) | 311 |
| Tru1I | TTAA | 5 cut(s) | 47, 95, 185, 333, 532 |
| Tru9I | TTAA | 5 cut(s) | 47, 95, 185, 333, 532 |
| TspDTI | ATGAA | 8 cut(s) | 5, 26, 61, 89, 122, 126, 359, 483 |
| VspI | ATTAAT | 2 cut(s) | 185, 333 |
| XapI | RAATTY | 1 cut(s) | 178 |
| XspI | CTAG | 1 cut(s) | 407 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |