Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 208 |
| AccB1I | GGYRCC | 1 cut(s) | 208 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 544 |
| AciI | CCGC | 2 cut(s) | 725, 770 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AcsI | RAATTY | 3 cut(s) | 81, 325, 800 |
| AfaI | GTAC | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 432, 544, 626, 671, 977 |
| AgsI | TTSAA | 8 cut(s) | 94, 173, 280, 397, 446, 497, 839, 947 |
| AluBI | AGCT | 2 cut(s) | 242, 992 |
| AluI | AGCT | 2 cut(s) | 242, 992 |
| Alw21I | GWGCWC | 1 cut(s) | 514 |
| Alw26I | GTCTC | 1 cut(s) | 618 |
| Alw44I | GTGCAC | 1 cut(s) | 510 |
| AlwI | GGATC | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 732 |
| ApaLI | GTGCAC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 1 cut(s) | 653 |
| ApoI | RAATTY | 3 cut(s) | 81, 325, 800 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 85 |
| Asp718I | GGTACC | 1 cut(s) | 208 |
| AspS9I | GGNCC | 2 cut(s) | 198, 733 |
| AsuHPI | GGTGA | 1 cut(s) | 563 |
| AsuII | TTCGAA | 1 cut(s) | 467 |
| AvaII | GGWCC | 1 cut(s) | 198 |
| BaeGI | GKGCMC | 1 cut(s) | 514 |
| BanI | GGYRCC | 1 cut(s) | 208 |
| BanII | GRGCYC | 1 cut(s) | 538 |
| Bbv12I | GWGCWC | 1 cut(s) | 514 |
| BbvI | GCAGC | 1 cut(s) | 640 |
| BccI | CCATC | 4 cut(s) | 48, 546, 715, 896 |
| BcoDI | GTCTC | 1 cut(s) | 618 |
| BfaI | CTAG | 1 cut(s) | 1001 |
| BglII | AGATCT | 1 cut(s) | 266 |
| BisI | GCNGC | 2 cut(s) | 654, 726 |
| BlsI | GCNGC | 2 cut(s) | 655, 727 |
| Bme18I | GGWCC | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 2 cut(s) | 198, 733 |
| BmiI | GGNNCC | 4 cut(s) | 162, 200, 210, 579 |
| BmsI | GCATC | 4 cut(s) | 640, 802, 905, 916 |
| BpmI | CTGGAG | 2 cut(s) | 131, 205 |
| Bpu14I | TTCGAA | 1 cut(s) | 467 |
| Bsa29I | ATCGAT | 1 cut(s) | 52 |
| BsaBI | GATNNNNATC | 1 cut(s) | 906 |
| BsaI | GGTCTC | 1 cut(s) | 618 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 432, 544, 626, 671, 977 |
| Bse1I | ACTGG | 1 cut(s) | 747 |
| Bse8I | GATNNNNATC | 1 cut(s) | 906 |
| BseCI | ATCGAT | 1 cut(s) | 52 |
| BseGI | GGATG | 2 cut(s) | 63, 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 906 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 432, 544, 626, 671, 977 |
| BseMII | CTCAG | 2 cut(s) | 288, 321 |
| BseNI | ACTGG | 1 cut(s) | 747 |
| BseRI | GAGGAG | 3 cut(s) | 606, 609, 943 |
| BseSI | GKGCMC | 1 cut(s) | 514 |
| BseXI | GCAGC | 1 cut(s) | 640 |
| BshFI | GGCC | 1 cut(s) | 734 |
| BshNI | GGYRCC | 1 cut(s) | 208 |
| BshVI | ATCGAT | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 1 cut(s) | 514 |
| BsiSI | CCGG | 1 cut(s) | 623 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 432, 544, 626, 671, 977 |
| BsmAI | GTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsmI | GAATGC | 1 cut(s) | 1055 |
| BsnI | GGCC | 1 cut(s) | 734 |
| Bso31I | GGTCTC | 1 cut(s) | 618 |
| Bsp119I | TTCGAA | 1 cut(s) | 467 |
| Bsp1286I | GDGCHC | 2 cut(s) | 514, 538 |
| Bsp143I | GATC | 4 cut(s) | 49, 149, 266, 774 |
| BspACI | CCGC | 2 cut(s) | 725, 770 |
| BspANI | GGCC | 1 cut(s) | 734 |
| BspCNI | CTCAG | 2 cut(s) | 289, 322 |
| BspDI | ATCGAT | 1 cut(s) | 52 |
| BspLI | GGNNCC | 4 cut(s) | 162, 200, 210, 579 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspT104I | TTCGAA | 1 cut(s) | 467 |
| BspT107I | GGYRCC | 1 cut(s) | 208 |
| BspTNI | GGTCTC | 1 cut(s) | 618 |
| BsrI | ACTGG | 1 cut(s) | 747 |
| BssMI | GATC | 4 cut(s) | 49, 149, 266, 774 |
| Bst4CI | ACNGT | 1 cut(s) | 490 |
| Bst6I | CTCTTC | 1 cut(s) | 879 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1010 |
| BstBI | TTCGAA | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 2 cut(s) | 817, 1011 |
| BstDEI | CTNAG | 2 cut(s) | 297, 330 |
| BstEII | GGTNACC | 1 cut(s) | 980 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 669 |
| BstF5I | GGATG | 2 cut(s) | 63, 817 |
| BstKTI | GATC | 4 cut(s) | 52, 152, 269, 777 |
| BstMAI | GTCTC | 1 cut(s) | 618 |
| BstMBI | GATC | 4 cut(s) | 49, 149, 266, 774 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 731, 812, 1010 |
| BstNSI | RCATGY | 2 cut(s) | 770, 1013 |
| BstPI | GGTNACC | 1 cut(s) | 980 |
| BstSLI | GKGCMC | 1 cut(s) | 514 |
| BstV1I | GCAGC | 1 cut(s) | 640 |
| BstX2I | RGATCY | 2 cut(s) | 149, 266 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 609 |
| BstYI | RGATCY | 2 cut(s) | 149, 266 |
| Bsu15I | ATCGAT | 1 cut(s) | 52 |
| BsuRI | GGCC | 1 cut(s) | 734 |
| BsuTUI | ATCGAT | 1 cut(s) | 52 |
| BtsCI | GGATG | 2 cut(s) | 63, 817 |
| BtsI | GCAGTG | 1 cut(s) | 142 |
| BtsIMutI | CAGTG | 2 cut(s) | 142, 754 |
| Cac8I | GCNNGC | 2 cut(s) | 817, 1011 |
| Cfr13I | GGNCC | 2 cut(s) | 198, 733 |
| ClaI | ATCGAT | 1 cut(s) | 52 |
| Csp6I | GTAC | 1 cut(s) | 209 |
| CviAII | CATG | 5 cut(s) | 344, 767, 778, 891, 1010 |
| CviQI | GTAC | 1 cut(s) | 209 |
| DdeI | CTNAG | 2 cut(s) | 297, 330 |
| DpnI | GATC | 4 cut(s) | 51, 151, 268, 776 |
| DpnII | GATC | 4 cut(s) | 49, 149, 266, 774 |
| Eam1104I | CTCTTC | 1 cut(s) | 879 |
| EarI | CTCTTC | 1 cut(s) | 879 |
| Eco24I | GRGCYC | 1 cut(s) | 538 |
| Eco31I | GGTCTC | 1 cut(s) | 618 |
| Eco32I | GATATC | 1 cut(s) | 117 |
| Eco47I | GGWCC | 1 cut(s) | 198 |
| Eco91I | GGTNACC | 1 cut(s) | 980 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 669 |
| EcoO65I | GGTNACC | 1 cut(s) | 980 |
| EcoRI | GAATTC | 1 cut(s) | 325 |
| EcoRV | GATATC | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 538 |
| FaeI | CATG | 5 cut(s) | 347, 770, 781, 894, 1013 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1043 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 5 cut(s) | 343, 766, 777, 890, 1009 |
| FauNDI | CATATG | 1 cut(s) | 314 |
| Fnu4HI | GCNGC | 2 cut(s) | 654, 726 |
| FokI | GGATG | 2 cut(s) | 70, 824 |
| FriOI | GRGCYC | 1 cut(s) | 538 |
| Fsp4HI | GCNGC | 2 cut(s) | 654, 726 |
| FspBI | CTAG | 1 cut(s) | 1001 |
| GluI | GCNGC | 2 cut(s) | 654, 726 |
| GsuI | CTGGAG | 2 cut(s) | 131, 205 |
| HaeIII | GGCC | 1 cut(s) | 734 |
| HapII | CCGG | 1 cut(s) | 623 |
| Hin1II | CATG | 5 cut(s) | 347, 770, 781, 894, 1013 |
| HinfI | GANTC | 5 cut(s) | 302, 839, 845, 887, 1039 |
| HpaII | CCGG | 1 cut(s) | 623 |
| HphI | GGTGA | 1 cut(s) | 563 |
| Hpy166II | GTNNAC | 1 cut(s) | 512 |
| Hpy188I | TCNGA | 4 cut(s) | 298, 331, 844, 901 |
| Hpy188III | TCNNGA | 3 cut(s) | 184, 665, 793 |
| Hpy8I | GTNNAC | 1 cut(s) | 512 |
| HpyAV | CCTTC | 4 cut(s) | 491, 746, 868, 1053 |
| HpyCH4III | ACNGT | 1 cut(s) | 490 |
| HpyCH4IV | ACGT | 1 cut(s) | 690 |
| HpyCH4V | TGCA | 4 cut(s) | 135, 512, 937, 1050 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 731, 812, 1010 |
| HpyF3I | CTNAG | 2 cut(s) | 297, 330 |
| HpySE526I | ACGT | 1 cut(s) | 690 |
| Hsp92II | CATG | 5 cut(s) | 347, 770, 781, 894, 1013 |
| KpnI | GGTACC | 1 cut(s) | 212 |
| Kzo9I | GATC | 4 cut(s) | 49, 149, 266, 774 |
| Lsp1109I | GCAGC | 1 cut(s) | 640 |
| LweI | GCATC | 4 cut(s) | 640, 802, 905, 916 |
| MaeI | CTAG | 1 cut(s) | 1001 |
| MaeII | ACGT | 1 cut(s) | 690 |
| MaeIII | GTNAC | 1 cut(s) | 980 |
| MalI | GATC | 4 cut(s) | 51, 151, 268, 776 |
| MboI | GATC | 4 cut(s) | 49, 149, 266, 774 |
| MboII | GAAGA | 5 cut(s) | 144, 248, 816, 896, 959 |
| MflI | RGATCY | 2 cut(s) | 149, 266 |
| MhlI | GDGCHC | 2 cut(s) | 514, 538 |
| MlyI | GAGTC | 2 cut(s) | 296, 896 |
| MmeI | TCCRAC | 2 cut(s) | 127, 450 |
| MroXI | GAANNNNTTC | 1 cut(s) | 85 |
| MspI | CCGG | 1 cut(s) | 623 |
| Mva1269I | GAATGC | 1 cut(s) | 1055 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 731, 812, 1010 |
| NdeI | CATATG | 1 cut(s) | 314 |
| NdeII | GATC | 4 cut(s) | 49, 149, 266, 774 |
| NlaIII | CATG | 5 cut(s) | 347, 770, 781, 894, 1013 |
| NlaIV | GGNNCC | 4 cut(s) | 162, 200, 210, 579 |
| NspI | RCATGY | 2 cut(s) | 770, 1013 |
| NspV | TTCGAA | 1 cut(s) | 467 |
| PaeI | GCATGC | 1 cut(s) | 1013 |
| PctI | GAATGC | 1 cut(s) | 1055 |
| PdmI | GAANNNNTTC | 1 cut(s) | 85 |
| PfeI | GAWTC | 3 cut(s) | 839, 845, 1039 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 544 |
| PkrI | GCNGC | 2 cut(s) | 655, 727 |
| PleI | GAGTC | 2 cut(s) | 296, 895 |
| PpsI | GAGTC | 2 cut(s) | 296, 895 |
| PspEI | GGTNACC | 1 cut(s) | 980 |
| PspN4I | GGNNCC | 4 cut(s) | 162, 200, 210, 579 |
| PspPI | GGNCC | 2 cut(s) | 198, 733 |
| PsuI | RGATCY | 2 cut(s) | 149, 266 |
| RsaI | GTAC | 1 cut(s) | 210 |
| RsaNI | GTAC | 1 cut(s) | 209 |
| SatI | GCNGC | 2 cut(s) | 654, 726 |
| Sau3AI | GATC | 4 cut(s) | 49, 149, 266, 774 |
| Sau96I | GGNCC | 2 cut(s) | 198, 733 |
| SchI | GAGTC | 2 cut(s) | 296, 896 |
| SduI | GDGCHC | 2 cut(s) | 514, 538 |
| SetI | ASST | 9 cut(s) | 210, 244, 405, 502, 583, 676, 693, 758, 994 |
| SfaNI | GCATC | 4 cut(s) | 640, 802, 905, 916 |
| SfuI | TTCGAA | 1 cut(s) | 467 |
| SinI | GGWCC | 1 cut(s) | 198 |
| SphI | GCATGC | 1 cut(s) | 1013 |
| SsiI | CCGC | 2 cut(s) | 725, 770 |
| SspMI | CTAG | 1 cut(s) | 1001 |
| TaaI | ACNGT | 1 cut(s) | 490 |
| TaiI | ACGT | 1 cut(s) | 693 |
| TaqI | TCGA | 3 cut(s) | 52, 467, 792 |
| TauI | GCSGC | 1 cut(s) | 728 |
| TfiI | GAWTC | 3 cut(s) | 839, 845, 1039 |
| TscAI | CASTG | 2 cut(s) | 142, 754 |
| TseI | GCWGC | 1 cut(s) | 653 |
| TspDTI | ATGAA | 3 cut(s) | 332, 489, 812 |
| TspRI | CASTG | 2 cut(s) | 142, 754 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 544 |
| VneI | GTGCAC | 1 cut(s) | 510 |
| VpaK11BI | GGWCC | 1 cut(s) | 198 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 669 |
| XapI | RAATTY | 3 cut(s) | 81, 325, 800 |
| XceI | RCATGY | 2 cut(s) | 770, 1013 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 545 |
| XmnI | GAANNNNTTC | 1 cut(s) | 85 |
| XspI | CTAG | 1 cut(s) | 1001 |