Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 31 - 128 | 1.1e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 392 |
| AccB1I | GGYRCC | 1 cut(s) | 392 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 194 |
| AccI | GTMKAC | 1 cut(s) | 291 |
| AciI | CCGC | 2 cut(s) | 239, 390 |
| AcsI | RAATTY | 2 cut(s) | 27, 319 |
| AfaI | GTAC | 4 cut(s) | 55, 83, 352, 394 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 74, 194 |
| AgsI | TTSAA | 3 cut(s) | 32, 260, 329 |
| AjnI | CCWGG | 1 cut(s) | 56 |
| AluBI | AGCT | 2 cut(s) | 104, 308 |
| AluI | AGCT | 2 cut(s) | 104, 308 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| ApoI | RAATTY | 2 cut(s) | 27, 319 |
| AseI | ATTAAT | 1 cut(s) | 167 |
| Asp718I | GGTACC | 1 cut(s) | 392 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| BanI | GGYRCC | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BccI | CCATC | 1 cut(s) | 92 |
| BciT130I | CCWGG | 1 cut(s) | 58 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfmI | CTRYAG | 1 cut(s) | 69 |
| Bme1390I | CCNGG | 1 cut(s) | 58 |
| BmiI | GGNNCC | 1 cut(s) | 394 |
| BmrFI | CCNGG | 1 cut(s) | 58 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BsaJI | CCNNGG | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 74, 194 |
| BseBI | CCWGG | 1 cut(s) | 58 |
| BseDI | CCNNGG | 1 cut(s) | 39 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 74, 194 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseRI | GAGGAG | 1 cut(s) | 359 |
| BsgI | GTGCAG | 1 cut(s) | 159 |
| BshNI | GGYRCC | 1 cut(s) | 392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 74, 194 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 1 cut(s) | 177 |
| Bsp19I | CCATGG | 1 cut(s) | 39 |
| BspACI | CCGC | 2 cut(s) | 239, 390 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspLI | GGNNCC | 1 cut(s) | 394 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 1 cut(s) | 392 |
| BssECI | CCNNGG | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 177 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst2UI | CCWGG | 1 cut(s) | 58 |
| Bst4CI | ACNGT | 2 cut(s) | 119, 296 |
| Bst6I | CTCTTC | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 3 cut(s) | 241, 384, 388 |
| BstDEI | CTNAG | 1 cut(s) | 342 |
| BstDSI | CCRYGG | 1 cut(s) | 39 |
| BstKTI | GATC | 1 cut(s) | 180 |
| BstMBI | GATC | 1 cut(s) | 177 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 236 |
| BstNI | CCWGG | 1 cut(s) | 58 |
| BstSCI | CCNGG | 1 cut(s) | 56 |
| BstSFI | CTRYAG | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BtgI | CCRYGG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 3 cut(s) | 241, 384, 388 |
| Csp6I | GTAC | 4 cut(s) | 54, 82, 351, 393 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 2 cut(s) | 104, 308 |
| CviKI_1 | RGCY | 2 cut(s) | 104, 308 |
| CviQI | GTAC | 4 cut(s) | 54, 82, 351, 393 |
| DdeI | CTNAG | 1 cut(s) | 342 |
| DpnI | GATC | 1 cut(s) | 179 |
| DpnII | GATC | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 121 |
| EarI | CTCTTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco32I | GATATC | 1 cut(s) | 283 |
| EcoRI | GAATTC | 1 cut(s) | 319 |
| EcoRII | CCWGG | 1 cut(s) | 56 |
| EcoRV | GATATC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 2 cut(s) | 41, 380 |
| FatI | CATG | 1 cut(s) | 39 |
| FauI | CCCGC | 1 cut(s) | 232 |
| FblI | GTMKAC | 1 cut(s) | 291 |
| FspBI | CTAG | 1 cut(s) | 314 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 1 cut(s) | 373 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 150, 343 |
| Hpy188III | TCNNGA | 4 cut(s) | 15, 257, 278, 370 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| HpyAV | CCTTC | 1 cut(s) | 72 |
| HpyCH4III | ACNGT | 2 cut(s) | 119, 296 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 140, 382 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 236 |
| HpyF3I | CTNAG | 1 cut(s) | 342 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| KpnI | GGTACC | 1 cut(s) | 396 |
| Kzo9I | GATC | 1 cut(s) | 177 |
| LmnI | GCTCC | 2 cut(s) | 4, 101 |
| LpnPI | CCDG | 3 cut(s) | 43, 70, 81 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 1 cut(s) | 179 |
| MboI | GATC | 1 cut(s) | 177 |
| MboII | GAAGA | 2 cut(s) | 138, 374 |
| MfeI | CAATTG | 1 cut(s) | 189 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 5 cut(s) | 27, 86, 164, 189, 319 |
| MlyI | GAGTC | 1 cut(s) | 367 |
| MmeI | TCCRAC | 1 cut(s) | 55 |
| MnlI | CCTC | 4 cut(s) | 122, 285, 337, 340 |
| MseI | TTAA | 2 cut(s) | 89, 167 |
| MspR9I | CCNGG | 1 cut(s) | 58 |
| MunI | CAATTG | 1 cut(s) | 189 |
| MvaI | CCWGG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 236 |
| NcoI | CCATGG | 1 cut(s) | 39 |
| NdeII | GATC | 1 cut(s) | 177 |
| NlaIII | CATG | 1 cut(s) | 43 |
| NlaIV | GGNNCC | 1 cut(s) | 394 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 194 |
| PleI | GAGTC | 1 cut(s) | 367 |
| PpsI | GAGTC | 1 cut(s) | 367 |
| PshBI | ATTAAT | 1 cut(s) | 167 |
| Psp6I | CCWGG | 1 cut(s) | 56 |
| PspGI | CCWGG | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 1 cut(s) | 394 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| RsaI | GTAC | 4 cut(s) | 55, 83, 352, 394 |
| RsaNI | GTAC | 4 cut(s) | 54, 82, 351, 393 |
| SalI | GTCGAC | 1 cut(s) | 290 |
| SaqAI | TTAA | 2 cut(s) | 89, 167 |
| Sau3AI | GATC | 1 cut(s) | 177 |
| SchI | GAGTC | 1 cut(s) | 367 |
| ScrFI | CCNGG | 1 cut(s) | 58 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 6 cut(s) | 59, 83, 106, 139, 310, 315 |
| SfcI | CTRYAG | 1 cut(s) | 69 |
| Sse9I | AATT | 5 cut(s) | 27, 86, 164, 189, 319 |
| SsiI | CCGC | 2 cut(s) | 239, 390 |
| SspI | AATATT | 1 cut(s) | 271 |
| SspMI | CTAG | 1 cut(s) | 314 |
| StyD4I | CCNGG | 1 cut(s) | 56 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaaI | ACNGT | 2 cut(s) | 119, 296 |
| TaqI | TCGA | 2 cut(s) | 285, 291 |
| TasI | AATT | 5 cut(s) | 27, 86, 164, 189, 319 |
| Tru1I | TTAA | 2 cut(s) | 89, 167 |
| Tru9I | TTAA | 2 cut(s) | 89, 167 |
| TscAI | CASTG | 1 cut(s) | 237 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 1 cut(s) | 35 |
| TspRI | CASTG | 1 cut(s) | 237 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 194 |
| VspI | ATTAAT | 1 cut(s) | 167 |
| XapI | RAATTY | 2 cut(s) | 27, 319 |
| XmiI | GTMKAC | 1 cut(s) | 291 |
| XspI | CTAG | 1 cut(s) | 314 |