Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 396 |
| AccII | CGCG | 1 cut(s) | 330 |
| AciI | CCGC | 8 cut(s) | 81, 132, 135, 147, 288, 312, 328, 330 |
| AcsI | RAATTY | 1 cut(s) | 394 |
| AcyI | GRCGYC | 1 cut(s) | 309 |
| AgsI | TTSAA | 1 cut(s) | 377 |
| AjnI | CCWGG | 1 cut(s) | 192 |
| AluBI | AGCT | 4 cut(s) | 18, 143, 268, 416 |
| AluI | AGCT | 4 cut(s) | 18, 143, 268, 416 |
| Alw26I | GTCTC | 1 cut(s) | 202 |
| ApeKI | GCWGC | 2 cut(s) | 108, 347 |
| ApoI | RAATTY | 1 cut(s) | 394 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 356, 388 |
| AspLEI | GCGC | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| AsuNHI | GCTAGC | 1 cut(s) | 143 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 144, 176 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| BbvI | GCAGC | 2 cut(s) | 95, 334 |
| BciT130I | CCWGG | 1 cut(s) | 194 |
| BcoDI | GTCTC | 1 cut(s) | 202 |
| BfaI | CTAG | 6 cut(s) | 33, 42, 47, 125, 144, 269 |
| BfmI | CTRYAG | 1 cut(s) | 417 |
| BfuAI | ACCTGC | 1 cut(s) | 396 |
| BglII | AGATCT | 1 cut(s) | 121 |
| BisI | GCNGC | 6 cut(s) | 82, 109, 133, 312, 331, 348 |
| BlsI | GCNGC | 6 cut(s) | 83, 110, 134, 313, 332, 349 |
| Bme1390I | CCNGG | 1 cut(s) | 194 |
| BmiI | GGNNCC | 4 cut(s) | 76, 103, 237, 334 |
| BmrFI | CCNGG | 1 cut(s) | 194 |
| BmsI | GCATC | 1 cut(s) | 119 |
| BmtI | GCTAGC | 1 cut(s) | 147 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 308, 340 |
| BsaHI | GRCGYC | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 3 cut(s) | 192, 315, 328 |
| Bse118I | RCCGGY | 1 cut(s) | 352 |
| BseBI | CCWGG | 1 cut(s) | 194 |
| BseDI | CCNNGG | 3 cut(s) | 192, 315, 328 |
| BseGI | GGATG | 1 cut(s) | 134 |
| BseMII | CTCAG | 2 cut(s) | 155, 402 |
| BseRI | GAGGAG | 3 cut(s) | 242, 245, 248 |
| BseXI | GCAGC | 2 cut(s) | 95, 334 |
| Bsh1236I | CGCG | 1 cut(s) | 330 |
| Bsh1285I | CGRYCG | 1 cut(s) | 357 |
| BsiEI | CGRYCG | 1 cut(s) | 357 |
| BsiSI | CCGG | 3 cut(s) | 78, 105, 353 |
| BsmAI | GTCTC | 1 cut(s) | 202 |
| Bso31I | GGTCTC | 1 cut(s) | 202 |
| Bsp143I | GATC | 2 cut(s) | 121, 240 |
| BspACI | CCGC | 8 cut(s) | 81, 132, 135, 147, 288, 312, 328, 330 |
| BspCNI | CTCAG | 2 cut(s) | 156, 401 |
| BspFNI | CGCG | 1 cut(s) | 330 |
| BspLI | GGNNCC | 4 cut(s) | 76, 103, 237, 334 |
| BspMI | ACCTGC | 1 cut(s) | 396 |
| BspOI | GCTAGC | 1 cut(s) | 147 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspTNI | GGTCTC | 1 cut(s) | 202 |
| BsrFI | RCCGGY | 1 cut(s) | 352 |
| BssAI | RCCGGY | 1 cut(s) | 352 |
| BssECI | CCNNGG | 3 cut(s) | 192, 315, 328 |
| BssMI | GATC | 2 cut(s) | 121, 240 |
| BssNI | GRCGYC | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 1 cut(s) | 194 |
| Bst6I | CTCTTC | 5 cut(s) | 147, 205, 246, 258, 375 |
| BstACI | GRCGYC | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 164, 388 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 1 cut(s) | 134 |
| BstFNI | CGCG | 1 cut(s) | 330 |
| BstHHI | GCGC | 1 cut(s) | 352 |
| BstKTI | GATC | 2 cut(s) | 124, 243 |
| BstMAI | GTCTC | 1 cut(s) | 202 |
| BstMBI | GATC | 2 cut(s) | 121, 240 |
| BstMCI | CGRYCG | 1 cut(s) | 357 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 108, 287 |
| BstNI | CCWGG | 1 cut(s) | 194 |
| BstNSI | RCATGY | 1 cut(s) | 29 |
| BstSCI | CCNGG | 1 cut(s) | 192 |
| BstSFI | CTRYAG | 1 cut(s) | 417 |
| BstUI | CGCG | 1 cut(s) | 330 |
| BstV1I | GCAGC | 2 cut(s) | 95, 334 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtsCI | GGATG | 1 cut(s) | 134 |
| BveI | ACCTGC | 1 cut(s) | 396 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CfoI | GCGC | 1 cut(s) | 352 |
| Cfr10I | RCCGGY | 1 cut(s) | 352 |
| Cfr42I | CCGCGG | 1 cut(s) | 331 |
| CseI | GACGC | 1 cut(s) | 317 |
| CviAII | CATG | 1 cut(s) | 26 |
| DdeI | CTNAG | 2 cut(s) | 164, 388 |
| DpnI | GATC | 2 cut(s) | 123, 242 |
| DpnII | GATC | 2 cut(s) | 121, 240 |
| Eam1104I | CTCTTC | 5 cut(s) | 147, 205, 246, 258, 375 |
| EarI | CTCTTC | 5 cut(s) | 147, 205, 246, 258, 375 |
| EciI | GGCGGA | 2 cut(s) | 150, 277 |
| Eco31I | GGTCTC | 1 cut(s) | 202 |
| EcoRII | CCWGG | 1 cut(s) | 192 |
| FaeI | CATG | 1 cut(s) | 29 |
| FaiI | YATR | 3 cut(s) | 15, 27, 419 |
| FatI | CATG | 1 cut(s) | 25 |
| FauI | CCCGC | 1 cut(s) | 335 |
| Fnu4HI | GCNGC | 6 cut(s) | 82, 109, 133, 312, 331, 348 |
| FokI | GGATG | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 6 cut(s) | 82, 109, 133, 312, 331, 348 |
| FspBI | CTAG | 6 cut(s) | 33, 42, 47, 125, 144, 269 |
| GlaI | GCGC | 1 cut(s) | 351 |
| GluI | GCNGC | 6 cut(s) | 82, 109, 133, 312, 331, 348 |
| HapII | CCGG | 3 cut(s) | 78, 105, 353 |
| HgaI | GACGC | 1 cut(s) | 317 |
| HhaI | GCGC | 1 cut(s) | 352 |
| Hin1I | GRCGYC | 1 cut(s) | 309 |
| Hin1II | CATG | 1 cut(s) | 29 |
| Hin6I | GCGC | 1 cut(s) | 350 |
| HinP1I | GCGC | 1 cut(s) | 350 |
| HinfI | GANTC | 2 cut(s) | 94, 386 |
| HpaII | CCGG | 3 cut(s) | 78, 105, 353 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy188I | TCNGA | 4 cut(s) | 205, 298, 337, 425 |
| Hpy188III | TCNNGA | 2 cut(s) | 42, 358 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyCH4V | TGCA | 1 cut(s) | 405 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 108, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 164, 388 |
| Hsp92I | GRCGYC | 1 cut(s) | 309 |
| Hsp92II | CATG | 1 cut(s) | 29 |
| HspAI | GCGC | 1 cut(s) | 350 |
| KspI | CCGCGG | 1 cut(s) | 331 |
| Kzo9I | GATC | 2 cut(s) | 121, 240 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LmnI | GCTCC | 3 cut(s) | 107, 235, 338 |
| LpnPI | CCDG | 6 cut(s) | 91, 118, 179, 206, 366, 391 |
| Lsp1109I | GCAGC | 2 cut(s) | 95, 334 |
| LweI | GCATC | 1 cut(s) | 119 |
| MaeI | CTAG | 6 cut(s) | 33, 42, 47, 125, 144, 269 |
| MalI | GATC | 2 cut(s) | 123, 242 |
| MboI | GATC | 2 cut(s) | 121, 240 |
| MboII | GAAGA | 7 cut(s) | 164, 192, 263, 275, 317, 389, 392 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MluCI | AATT | 2 cut(s) | 220, 394 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 1 cut(s) | 330 |
| MspI | CCGG | 3 cut(s) | 78, 105, 353 |
| MspR9I | CCNGG | 1 cut(s) | 194 |
| MvaI | CCWGG | 1 cut(s) | 194 |
| MvnI | CGCG | 1 cut(s) | 330 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 108, 287 |
| NdeII | GATC | 2 cut(s) | 121, 240 |
| NheI | GCTAGC | 1 cut(s) | 143 |
| NlaIII | CATG | 1 cut(s) | 29 |
| NlaIV | GGNNCC | 4 cut(s) | 76, 103, 237, 334 |
| NmeAIII | GCCGAG | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 29 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 255, 363 |
| PfeI | GAWTC | 1 cut(s) | 94 |
| PkrI | GCNGC | 6 cut(s) | 83, 110, 134, 313, 332, 349 |
| PleI | GAGTC | 1 cut(s) | 380 |
| PpsI | GAGTC | 1 cut(s) | 380 |
| Psp6I | CCWGG | 1 cut(s) | 192 |
| PspGI | CCWGG | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 4 cut(s) | 76, 103, 237, 334 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| SacII | CCGCGG | 1 cut(s) | 331 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SatI | GCNGC | 6 cut(s) | 82, 109, 133, 312, 331, 348 |
| Sau3AI | GATC | 2 cut(s) | 121, 240 |
| SchI | GAGTC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 1 cut(s) | 194 |
| SetI | ASST | 8 cut(s) | 20, 76, 145, 198, 270, 276, 410, 418 |
| SfaNI | GCATC | 1 cut(s) | 119 |
| SfcI | CTRYAG | 1 cut(s) | 417 |
| Sfr303I | CCGCGG | 1 cut(s) | 331 |
| SgrBI | CCGCGG | 1 cut(s) | 331 |
| Sse9I | AATT | 2 cut(s) | 220, 394 |
| SsiI | CCGC | 8 cut(s) | 81, 132, 135, 147, 288, 312, 328, 330 |
| SspMI | CTAG | 6 cut(s) | 33, 42, 47, 125, 144, 269 |
| StyD4I | CCNGG | 1 cut(s) | 192 |
| TaqI | TCGA | 2 cut(s) | 225, 357 |
| TasI | AATT | 2 cut(s) | 220, 394 |
| TauI | GCSGC | 4 cut(s) | 84, 135, 314, 333 |
| TfiI | GAWTC | 1 cut(s) | 94 |
| TseI | GCWGC | 2 cut(s) | 108, 347 |
| TspDTI | ATGAA | 1 cut(s) | 318 |
| XapI | RAATTY | 1 cut(s) | 394 |
| XbaI | TCTAGA | 1 cut(s) | 41 |
| XceI | RCATGY | 1 cut(s) | 29 |
| XspI | CTAG | 6 cut(s) | 33, 42, 47, 125, 144, 269 |