Rorug05G0083200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000072
Physical Location & Seq
Reverse (-)
7188370 .. 7210048
21679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0083200.1

Sequence Viewer

Length: 3375 bp
ATGGCAGCTAGCTTAATCATGGCATCACAAACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGATCGTATCACCACTGACCCTCAAAACATGATCTTGACCAACTGGTCAACCACCTCCCCTGTTTGCAATTGGGTTGGTGTCACTTGTGGTGCACGCCATCATCGAGTCACCTTCTTGAACATCTCTTACTTTGGTCTCGCGGGCACCATTCCTCCAGAACTAGGCAACCTTTCATTTCTTGTTGAGTTGCTGATCAAAAATAACAGCTTCCACGGTCCCTTGCCCCAAGAATCGGCTCGTTTGCAGCGATTGAAGTTCATTAGCTTCAGATTCAACAACTTTAAGGGTATCATTCCATCATGGTTTGGGTCCTTATCAAAACTTCAAGCCTTTGATTTGTATGGTAATCAGTTTTTAGGTTACATACCAGCTGCCATATTCAACTTATCAGCACTCAAAGTAATTAATTTGAGCTATAACCAGCTATCAGGTAGCATACCAAAAGAAATTGGAAACCTAACAATGTTGAAGGAGATAAAGCTTGATGGTAATAATTTCAAAGAACTTCCGAACGAGATTGGCACTTTGGATCAGTTGGAAGAATTGTACCTACAGTTCAATGCCTTACAAGGGCCTATTCCTATGGCTCTCTTCAACATGTCTTCTTTGATTATTTTGACATTTTTTAGAAACAATTTGACTGGTAGTCTTCCAGACAATATATGTCAGCATCTTCCGAACATTCAAGAGTTGAGTCTAGCTTACAACCAATTTGAAGGTCCACTTCCATCCAAATGGTTGCCATGCACACAACTTCTTTCATTACAATTGGGGATGAACAGTTTCAGTGGAAGCATACCCACCGATATTGCAAACTTAACCCAAATAAAGATGATTTCCCTTAGTTACAATCATTTGACAGGTACTATACCGCATGAGATTGGTGATCTCCCAAATTTGGAGAAATTGAACCTTGGTGTTAATAATCTCAACGGCCTCATCCCATCCTCAGTCTTCAATATGTCCACAATAACAACGATCTCGCTTATTTCCAATCAACTCTCAGGTAGTCTCCCTGTAAACATAGGCCTTGGGCTTCCAAACCTACAAGAGTTGTATCTAGGAGGCAATAAGCTAAGCGGAGTAATACCCAAATCCATTTCCAATGCTTCGCATCTCACATTCCTAGACATGGACGGCAACTCATTTTCTGGCTCTATTCCTAGCACGCTGTGTACCTTAACAAAACTTCAAATGCTTAGATTAGATTGGAACAATTTGACGATCGATTCTTCTACTGAAGAAGTTGATATGCTATCTTGTTTGGCCAATCTTAGAAATTTGACAAAATTAGATCTCAGTAGAAATCCGTTAAATGCAAACCTTCCCATTTCCTTTAGGAATCTGTCTACATCACTTCAAAATGTTAGATTAGCTAGCTGTAACATGAGAGGTAATATTCCCAATGATATGGGCAATTTGAGCAGCTTGATCGACCTACACTTGGGAAACAATCAATTGAGTGGACCAATACCAACCTTCATGGGAGGACTACAGAATCTCCAAGTTTTGCAATTGAATGGTAACAAATTGCGAGGACACATCCCGGATGAACTTTGTCAGCTAGAAAACCTAAATGGATTATTTTTGGGTGGTAATCAACTTACGGGTTCTATACCTTCATGCTTGGGCAATTTAACCAAAGCACTAAGATTTCTATCTTTAAGTTTCAATCTGTTGAATTCCACAATACCATCTACCTTGTGGGGACTCTCTGATATCTTGAATTTAGACTTGTCATCCAATTCCCTAACTGGACGTCTCTCAGATCGTATTGATAATTTGAAGGTTGCGGCGGTCATAGACTTATCAAACAACCAATTATCCGGTAGCATACCAGGCACCATTGGGGGTCTCCAAGCATTGATTTGGCTTTTCTTGAAAAATAATGGTTTTGAAGGCCCAATTCCTGGTTCATTTGGCGAATTGCTAAGCTTGGAAAGCTGTGATCTATCCAAGAACAATTTGTCAGGAATAATTCCAAAGTCTCTTGAAGCCCTCTTATATCTCCGGTATCTAAATCTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACTGGTGGAACTTTCCTGAACCTCTCTGCCCAATCATTTTTATCAAATGAAGGACTATGTGGTGCACCACGATTTCATGTCCCGCCATGCAAAAGGAAAAGTGATAGATCTATACTCATGCGGTTGAAATATATTGTTCCAGGGATCATATCAGCACTAGTACTCCTAGTGTCGCTTGTATTAATTTTGATCATACGCAGAAAAAGAAAGGCGGAAGTCGCAAGTGAGACTACCTTGTCACCTCAACTTCAAGAGACTACCTTGTTACCTCAACTTCAGTGGAGAAGAGTAGCATACCAAGAACTTCTAAGAGCGACCAATCGATTTGATGAATGCAACCTACTTGGCATTGGGGCTTTTGGCACTGGGGCTTTTGGCACAGTGTACAGAGGAACACTTTCAGATGGGATAAATGTTGCCATAAAGGTTTTTAAGCTAGAGTTGGAAAGGGCATTTTCAAGTTTTGAGCGTGAATGTGAAGTCCTAAGCAACATTTGTCACCGAAATCTTATCAAAGTCATCAGTTGCTGCAGTCAAATTGATTTCAAGGCCATCGTATTGAATTACATGCCTAATGGGAGCCTCGAGAAGTGGTTGTACTCTCCCAACTTTTCTCTGAACATCCTGCAGAGGTTGAACATAATGATAGATGTTGCATCGGCAGTGCAGTACCTTCATCACGGTTATGATACACCTATTGTCCATTGTGATTTGAAGCCAAGCAACATACTACTAGATGATGATATGGTCGCATATGTTTCTGATTTTGGCATTGCAAAAGTCTTGGGTGGAGAAGATTCCATGACTCAAACCCTGACCTTAGCCACAATTGGGTATATGGCTCCAGAGTATGGACTGGAAGGAATAGTCACCAGAAGAGGGGATGTGCACAGTTTTGGTATTCTGCTTTTGGAAACATTCACAAAGAGGAGGCCAACAGATGAGATGTTTGATGGGGAAATGAGTCTAAAGCAATGGGTTGAAAATGCATTATTTGCAGATGCAATAGTTGAAGTTATTGATACCAGTCTACTTGGGATTGAGGAAGATCATGCTTTTGTTAGCAAGAGGGAGTGTATATCATCCATTATGAGATTAGCTCTTGCTTGTTGTGTAGAATCACCGGAACAGAGGATAAATATGCAAGAGGCTCTAGCAACTTTGGACAAAATCAAGATCAAGTTTTTGATGGATGCCTCAGGAGGTGTGGTGAAGAACCATCATCTAATTGATGTATTGCATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

1124

Amino Acids

123.63

Weight (kDa)

6.07

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 14 - 53 6.1e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 149 - 190 1.6e-06 Leucine rich repeat
LRR_14 PF23598 150 - 255 7.5e-10 Leucine-rich repeat region
LRR_8 PF13855 202 - 262 9.8e-06 Leucine rich repeat
LRR_8 PF13855 348 - 406 3.5e-07 Leucine rich repeat
LRR_14 PF23598 360 - 483 2e-06 Leucine-rich repeat region
LRR_8 PF13855 371 - 431 4.8e-08 Leucine rich repeat
LRR_14 PF23598 484 - 579 4.6e-06 Leucine-rich repeat region
LRR_8 PF13855 501 - 559 6e-06 Leucine rich repeat
LRR_14 PF23598 574 - 704 4.8e-06 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 829 - 1095 2.3e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 829 - 1095 1.9e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 115, 2362
AatII GACGTC 1 cut(s) 1834
AccB1I GGYRCC 2 cut(s) 215, 1913
AccB7I CCANNNNNTGG 3 cut(s) 1982, 2132, 2978
AccI GTMKAC 2 cut(s) 1421, 3157
AccII CGCG 1 cut(s) 212
AciI CCGC 8 cut(s) 212, 944, 1152, 1865, 1868, 2210, 2248, 2339
AclWI GGATC 2 cut(s) 609, 2279
AcoI YGGCCR 1 cut(s) 1338
AcsI RAATTY 5 cut(s) 967, 1351, 1753, 1798, 2121
AcuI CTGAAG 3 cut(s) 322, 1332, 2387
AcyI GRCGYC 1 cut(s) 1831
AdeI CACNNNGTG 1 cut(s) 1245
AfaI GTAC 7 cut(s) 620, 937, 1249, 2289, 2513, 2726, 2798
AflIII ACRYGT 1 cut(s) 669
AhdI GACNNNNNGTC 1 cut(s) 717
AhlI ACTAGT 1 cut(s) 2284
AjnI CCWGG 3 cut(s) 1909, 1981, 2266
AjuI GAANNNNNNNTTGG 4 cut(s) 1969, 2001, 2106, 2138
Alw21I GWGCWC 3 cut(s) 166, 2194, 3018
Alw26I GTCTC 7 cut(s) 212, 1088, 1838, 1931, 2064, 2348, 2375
Alw44I GTGCAC 3 cut(s) 162, 2190, 3014
AlwI GGATC 2 cut(s) 609, 2279
AlwNI CAGNNNCTG 1 cut(s) 2655
Ama87I CYCGRG 1 cut(s) 2711
AoxI GGCC 7 cut(s) 644, 1006, 1099, 1338, 1972, 2676, 3059
ApaLI GTGCAC 3 cut(s) 162, 2190, 3014
ApeKI GCWGC 5 cut(s) 5, 316, 443, 1497, 2655
ApoI RAATTY 5 cut(s) 967, 1351, 1753, 1798, 2121
AseI ATTAAT 2 cut(s) 477, 2309
Asp700I GAANNNNTTC 2 cut(s) 854, 2524
AspS9I GGNCC 6 cut(s) 287, 381, 644, 791, 1538, 1973
AsuC2I CCSGG 1 cut(s) 1619
AsuHPI GGTGA 8 cut(s) 73, 172, 968, 2358, 2618, 2989, 3240, 3349
AsuNHI GCTAGC 2 cut(s) 8, 1448
AvaI CYCGRG 1 cut(s) 2711
AvaII GGWCC 4 cut(s) 287, 381, 791, 1538
AxyI CCTNAGG 1 cut(s) 3325
BaeGI GKGCMC 4 cut(s) 166, 218, 2194, 3018
BalI TGGCCA 1 cut(s) 1340
BanI GGYRCC 2 cut(s) 215, 1913
BarI GAAGNNNNNNTAC 2 cut(s) 2708, 2740
BbsI GAAGAC 3 cut(s) 666, 713, 1018
Bbv12I GWGCWC 3 cut(s) 166, 2194, 3018
BbvI GCAGC 5 cut(s) 17, 328, 430, 1509, 2642
BceAI ACGGC 2 cut(s) 1021, 1225
BcgI CGANNNNNNTGC 2 cut(s) 1486, 1520
BciT130I CCWGG 3 cut(s) 1911, 1983, 2268
BclI TGATCA 2 cut(s) 264, 2316
BcnI CCSGG 1 cut(s) 1619
BcoDI GTCTC 7 cut(s) 212, 1088, 1838, 1931, 2064, 2348, 2375
BcuI ACTAGT 1 cut(s) 2284
BfmI CTRYAG 4 cut(s) 623, 1565, 2656, 2753
BglII AGATCT 2 cut(s) 1366, 2234
BisI GCNGC 6 cut(s) 6, 317, 444, 1498, 1866, 2656
BlpI GCTNAGC 2 cut(s) 1148, 2003
BlsI GCNGC 6 cut(s) 7, 318, 445, 1499, 1867, 2657
BmcAI AGTACT 1 cut(s) 2289
Bme1390I CCNGG 4 cut(s) 1619, 1911, 1983, 2268
Bme18I GGWCC 4 cut(s) 287, 381, 791, 1538
BmeRI GACNNNNNGTC 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 2711
BmgT120I GGNCC 6 cut(s) 287, 381, 644, 791, 1538, 1973
BmiI GGNNCC 6 cut(s) 217, 289, 382, 1915, 2708, 2970
BmrFI CCNGG 4 cut(s) 1619, 1911, 1983, 2268
BmrI ACTGGG 1 cut(s) 2502
BmsI GCATC 6 cut(s) 32, 751, 1195, 2792, 3118, 3310
BmtI GCTAGC 2 cut(s) 12, 1452
BmuI ACTGGG 1 cut(s) 2502
BpiI GAAGAC 3 cut(s) 666, 713, 1018
BplI GAGNNNNNCTC 2 cut(s) 3211, 3243
BpmI CTGGAG 2 cut(s) 210, 2955
Bpu10I CCTNAGC 2 cut(s) 2612, 2947
Bpu1102I GCTNAGC 2 cut(s) 1148, 2003
BpuMI CCSGG 1 cut(s) 1619
Bsa29I ATCGAT 2 cut(s) 1299, 2449
BsaBI GATNNNNATC 1 cut(s) 1729
BsaHI GRCGYC 1 cut(s) 1831
BsaI GGTCTC 2 cut(s) 212, 1931
BsaJI CCNNGG 5 cut(s) 283, 985, 1102, 2113, 2267
BsaWI WCCGGW 3 cut(s) 1898, 2082, 3250
BsaXI ACNNNNNCTCC 8 cut(s) 208, 238, 1557, 1587, 2274, 2304, 3321, 3351
Bse1I ACTGG 8 cut(s) 49, 119, 718, 1831, 2134, 2497, 2988, 3153
Bse21I CCTNAGG 1 cut(s) 3325
Bse3DI GCAATG 2 cut(s) 2898, 3107
Bse8I GATNNNNATC 1 cut(s) 1729
BseBI CCWGG 3 cut(s) 1911, 1983, 2268
BseCI ATCGAT 2 cut(s) 1299, 2449
BseDI CCNNGG 5 cut(s) 283, 985, 1102, 2113, 2267
BseJI GATNNNNATC 1 cut(s) 1729
BseMI GCAATG 2 cut(s) 2898, 3107
BseMII CTCAG 5 cut(s) 1035, 1089, 1384, 1851, 3339
BseNI ACTGG 8 cut(s) 49, 119, 718, 1831, 2134, 2497, 2988, 3153
BseRI GAGGAG 1 cut(s) 3070
BseSI GKGCMC 4 cut(s) 166, 218, 2194, 3018
BseXI GCAGC 5 cut(s) 17, 328, 430, 1509, 2642
BsgI GTGCAG 1 cut(s) 2813
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 1299
BshFI GGCC 7 cut(s) 646, 1008, 1101, 1340, 1974, 2678, 3061
BshNI GGYRCC 2 cut(s) 215, 1913
BshVI ATCGAT 2 cut(s) 1299, 2449
BsiEI CGRYCG 1 cut(s) 1299
BsiHKAI GWGCWC 3 cut(s) 166, 2194, 3018
BsiHKCI CYCGRG 1 cut(s) 2711
BsiSI CCGG 4 cut(s) 1619, 1899, 2083, 3251
BslFI GGGAC 3 cut(s) 273, 1794, 2192
BsmAI GTCTC 7 cut(s) 212, 1088, 1838, 1931, 2064, 2348, 2375
BsmBI CGTCTC 1 cut(s) 1838
BsmFI GGGAC 3 cut(s) 273, 1794, 2192
BsmI GAATGC 1 cut(s) 2465
BsnI GGCC 7 cut(s) 646, 1008, 1101, 1340, 1974, 2678, 3061
Bso31I GGTCTC 2 cut(s) 212, 1931
BsoBI CYCGRG 1 cut(s) 2711
Bsp1286I GDGCHC 4 cut(s) 166, 218, 2194, 3018
Bsp1407I TGTACA 1 cut(s) 2511
Bsp1720I GCTNAGC 2 cut(s) 1148, 2003
BspACI CCGC 8 cut(s) 212, 944, 1152, 1865, 1868, 2210, 2248, 2339
BspANI GGCC 7 cut(s) 646, 1008, 1101, 1340, 1974, 2678, 3061
BspCNI CTCAG 5 cut(s) 1034, 1088, 1383, 1850, 3338
BspDI ATCGAT 2 cut(s) 1299, 2449
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 6 cut(s) 217, 289, 382, 1915, 2708, 2970
BspMAI CTGCAG 2 cut(s) 2660, 2757
BspOI GCTAGC 2 cut(s) 12, 1452
BspPI GGATC 2 cut(s) 609, 2279
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 215, 1913
BspTNI GGTCTC 2 cut(s) 212, 1931
BsrDI GCAATG 2 cut(s) 2898, 3107
BsrGI TGTACA 1 cut(s) 2511
BsrI ACTGG 8 cut(s) 49, 119, 718, 1831, 2134, 2497, 2988, 3153
BssECI CCNNGG 5 cut(s) 283, 985, 1102, 2113, 2267
BssNI GRCGYC 1 cut(s) 1831
BssT1I CCWWGG 3 cut(s) 985, 1102, 2113
Bst2UI CCWGG 3 cut(s) 1911, 1983, 2268
Bst4CI ACNGT 6 cut(s) 287, 627, 854, 2509, 2810, 3020
Bst6I CTCTTC 4 cut(s) 63, 668, 2407, 2998
BstACI GRCGYC 1 cut(s) 1831
BstAPI GCANNNNNTGC 1 cut(s) 3122
BstAUI TGTACA 1 cut(s) 2511
BstC8I GCNNGC 5 cut(s) 10, 166, 214, 1241, 1450
BstDSI CCRYGG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 212
BstMAI GTCTC 7 cut(s) 212, 1088, 1838, 1931, 2064, 2348, 2375
BstMCI CGRYCG 1 cut(s) 1299
BstMWI GCNNNNNNNGC 6 cut(s) 62, 1494, 1911, 2013, 2345, 3122
BstNI CCWGG 3 cut(s) 1911, 1983, 2268
BstNSI RCATGY 3 cut(s) 673, 2698, 3371
BstSCI CCNGG 4 cut(s) 1617, 1909, 1981, 2266
BstSFI CTRYAG 4 cut(s) 623, 1565, 2656, 2753
BstSLI GKGCMC 4 cut(s) 166, 218, 2194, 3018
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 5 cut(s) 17, 328, 430, 1509, 2642
BstV2I GAAGAC 3 cut(s) 666, 713, 1018
BstX2I RGATCY 2 cut(s) 1366, 2234
BstXI CCANNNNNNTGG 2 cut(s) 807, 1483
BstYI RGATCY 2 cut(s) 1366, 2234
Bsu15I ATCGAT 2 cut(s) 1299, 2449
Bsu36I CCTNAGG 1 cut(s) 3325
BsuRI GGCC 7 cut(s) 646, 1008, 1101, 1340, 1974, 2678, 3061
BsuTUI ATCGAT 2 cut(s) 1299, 2449
BtgI CCRYGG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 2796
BtsIMutI CAGTG 6 cut(s) 84, 865, 2411, 2490, 2514, 2796
Cac8I GCNNGC 5 cut(s) 10, 166, 214, 1241, 1450
CaiI CAGNNNCTG 1 cut(s) 2655
Cfr13I GGNCC 6 cut(s) 287, 381, 644, 791, 1538, 1973
ClaI ATCGAT 2 cut(s) 1299, 2449
Csp6I GTAC 7 cut(s) 619, 936, 1248, 2288, 2512, 2725, 2797
CspCI CAANNNNNGTGG 4 cut(s) 862, 897, 2387, 2422
CviQI GTAC 7 cut(s) 619, 936, 1248, 2288, 2512, 2725, 2797
DraIII CACNNNGTG 1 cut(s) 1245
DrdI GACNNNNNNGTC 2 cut(s) 115, 2362
DriI GACNNNNNGTC 1 cut(s) 717
DseDI GACNNNNNNGTC 2 cut(s) 115, 2362
EaeI YGGCCR 1 cut(s) 1338
Eam1104I CTCTTC 4 cut(s) 63, 668, 2407, 2998
Eam1105I GACNNNNNGTC 1 cut(s) 717
EarI CTCTTC 4 cut(s) 63, 668, 2407, 2998
EciI GGCGGA 1 cut(s) 2354
Eco130I CCWWGG 3 cut(s) 985, 1102, 2113
Eco147I AGGCCT 1 cut(s) 1101
Eco31I GGTCTC 2 cut(s) 212, 1931
Eco32I GATATC 1 cut(s) 1792
Eco47I GGWCC 4 cut(s) 287, 381, 791, 1538
Eco57I CTGAAG 3 cut(s) 322, 1332, 2387
Eco81I CCTNAGG 1 cut(s) 3325
Eco88I CYCGRG 1 cut(s) 2711
EcoO109I RGGNCCY 2 cut(s) 381, 644
EcoRI GAATTC 1 cut(s) 1753
EcoRII CCWGG 3 cut(s) 1909, 1981, 2266
EcoRV GATATC 1 cut(s) 1792
EcoT14I CCWWGG 3 cut(s) 985, 1102, 2113
EcoT22I ATGCAT 1 cut(s) 3118
ErhI CCWWGG 3 cut(s) 985, 1102, 2113
Esp3I CGTCTC 1 cut(s) 1838
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 3 cut(s) 273, 1794, 2192
FauI CCCGC 2 cut(s) 205, 2217
FauNDI CATATG 1 cut(s) 2881
FbaI TGATCA 2 cut(s) 264, 2316
FblI GTMKAC 2 cut(s) 1421, 3157
Fnu4HI GCNGC 6 cut(s) 6, 317, 444, 1498, 1866, 2656
Fsp4HI GCNGC 6 cut(s) 6, 317, 444, 1498, 1866, 2656
GluI GCNGC 6 cut(s) 6, 317, 444, 1498, 1866, 2656
GsuI CTGGAG 2 cut(s) 210, 2955
HaeIII GGCC 7 cut(s) 646, 1008, 1101, 1340, 1974, 2678, 3061
HapII CCGG 4 cut(s) 1619, 1899, 2083, 3251
Hin1I GRCGYC 1 cut(s) 1831
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 551, 2005
HpaII CCGG 4 cut(s) 1619, 1899, 2083, 3251
HphI GGTGA 8 cut(s) 73, 172, 968, 2358, 2618, 2989, 3240, 3349
Hpy188I TCNGA 8 cut(s) 341, 582, 750, 1789, 1840, 2530, 2745, 2890
HpyCH4III ACNGT 6 cut(s) 287, 627, 854, 2509, 2810, 3020
HpyCH4IV ACGT 1 cut(s) 1831
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 1494, 1911, 2013, 2345, 3122
HpySE526I ACGT 1 cut(s) 1831
Hsp92I GRCGYC 1 cut(s) 1831
Ksp22I TGATCA 2 cut(s) 264, 2316
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 2706, 2974
Lsp1109I GCAGC 5 cut(s) 17, 328, 430, 1509, 2642
LweI GCATC 6 cut(s) 32, 751, 1195, 2792, 3118, 3310
MaeII ACGT 1 cut(s) 1831
MfeI CAATTG 5 cut(s) 139, 839, 1529, 1586, 2955
MflI RGATCY 2 cut(s) 1366, 2234
MhlI GDGCHC 4 cut(s) 166, 218, 2194, 3018
MlsI TGGCCA 1 cut(s) 1340
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 5 cut(s) 186, 775, 1776, 2926, 3100
MmeI TCCRAC 3 cut(s) 588, 2150, 2550
Mox20I TGGCCA 1 cut(s) 1340
Mph1103I ATGCAT 1 cut(s) 3118
MroXI GAANNNNTTC 2 cut(s) 854, 2524
MscI TGGCCA 1 cut(s) 1340
MslI CAYNNNNRTG 2 cut(s) 805, 2811
Msp20I TGGCCA 1 cut(s) 1340
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 1619, 1899, 2083, 3251
MspR9I CCNGG 4 cut(s) 1619, 1911, 1983, 2268
MunI CAATTG 5 cut(s) 139, 839, 1529, 1586, 2955
Mva1269I GAATGC 1 cut(s) 2465
MvaI CCWGG 3 cut(s) 1911, 1983, 2268
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 62, 1494, 1911, 2013, 2345, 3122
NciI CCSGG 1 cut(s) 1619
NdeI CATATG 1 cut(s) 2881
NheI GCTAGC 2 cut(s) 8, 1448
NlaIV GGNNCC 6 cut(s) 217, 289, 382, 1915, 2708, 2970
NmuCI GTSAC 5 cut(s) 151, 178, 2364, 2624, 2995
NsiI ATGCAT 1 cut(s) 3118
NspI RCATGY 3 cut(s) 673, 2698, 3371
PaeR7I CTCGAG 1 cut(s) 2711
PceI AGGCCT 1 cut(s) 1101
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 172, 316
PctI GAATGC 1 cut(s) 2465
PdmI GAANNNNTTC 2 cut(s) 854, 2524
PfeI GAWTC 7 cut(s) 302, 342, 1301, 1414, 1570, 2924, 3245
PflMI CCANNNNNTGG 3 cut(s) 1982, 2132, 2978
PfoI TCCNGGA 1 cut(s) 1617
PkrI GCNGC 6 cut(s) 7, 318, 445, 1499, 1867, 2657
Ple19I CGATCG 1 cut(s) 1299
PleI GAGTC 5 cut(s) 185, 774, 1776, 2926, 3099
PpsI GAGTC 5 cut(s) 185, 774, 1776, 2926, 3099
PpuMI RGGWCCY 1 cut(s) 381
PscI ACATGT 1 cut(s) 669
PshBI ATTAAT 2 cut(s) 477, 2309
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 1909, 1981, 2266
PspGI CCWGG 3 cut(s) 1909, 1981, 2266
PspN4I GGNNCC 6 cut(s) 217, 289, 382, 1915, 2708, 2970
PspPI GGNCC 6 cut(s) 287, 381, 644, 791, 1538, 1973
PspPPI RGGWCCY 1 cut(s) 381
PsrI GAACNNNNNNTAC 4 cut(s) 182, 214, 611, 643
PstI CTGCAG 2 cut(s) 2660, 2757
PstNI CAGNNNCTG 1 cut(s) 2655
PsuI RGATCY 2 cut(s) 1366, 2234
PvuI CGATCG 1 cut(s) 1299
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 7 cut(s) 620, 937, 1249, 2289, 2513, 2726, 2798
RsaNI GTAC 7 cut(s) 619, 936, 1248, 2288, 2512, 2725, 2797
RseI CAYNNNNRTG 2 cut(s) 805, 2811
SapI GCTCTTC 1 cut(s) 63
SatI GCNGC 6 cut(s) 6, 317, 444, 1498, 1866, 2656
Sau96I GGNCC 6 cut(s) 287, 381, 644, 791, 1538, 1973
ScaI AGTACT 1 cut(s) 2289
SchI GAGTC 5 cut(s) 186, 775, 1776, 2926, 3100
ScrFI CCNGG 4 cut(s) 1619, 1911, 1983, 2268
SduI GDGCHC 4 cut(s) 166, 218, 2194, 3018
SfaNI GCATC 6 cut(s) 32, 751, 1195, 2792, 3118, 3310
SfcI CTRYAG 4 cut(s) 623, 1565, 2656, 2753
Sfr274I CTCGAG 1 cut(s) 2711
SinI GGWCC 4 cut(s) 287, 381, 791, 1538
SlaI CTCGAG 1 cut(s) 2711
SmiMI CAYNNNNRTG 2 cut(s) 805, 2811
SmlI CTYRAG 1 cut(s) 2711
SmoI CTYRAG 1 cut(s) 2711
SpeI ACTAGT 1 cut(s) 2284
SseBI AGGCCT 1 cut(s) 1101
SsiI CCGC 8 cut(s) 212, 944, 1152, 1865, 1868, 2210, 2248, 2339
SspI AATATT 1 cut(s) 1471
StuI AGGCCT 1 cut(s) 1101
StyD4I CCNGG 4 cut(s) 1617, 1909, 1981, 2266
StyI CCWWGG 3 cut(s) 985, 1102, 2113
TaaI ACNGT 6 cut(s) 287, 627, 854, 2509, 2810, 3020
TaiI ACGT 1 cut(s) 1834
TaqI TCGA 5 cut(s) 175, 1299, 1506, 2449, 2712
TatI WGTACW 3 cut(s) 2287, 2511, 2724
TauI GCSGC 1 cut(s) 1868
TfiI GAWTC 7 cut(s) 302, 342, 1301, 1414, 1570, 2924, 3245
TscAI CASTG 6 cut(s) 91, 865, 2411, 2497, 2514, 2796
TseFI GTSAC 5 cut(s) 151, 178, 2364, 2624, 2995
TseI GCWGC 5 cut(s) 5, 316, 443, 1497, 2655
Tsp45I GTSAC 5 cut(s) 151, 178, 2364, 2624, 2995
TspGWI ACGGA 1 cut(s) 1371
TspRI CASTG 6 cut(s) 91, 865, 2411, 2497, 2514, 2796
Van91I CCANNNNNTGG 3 cut(s) 1982, 2132, 2978
VneI GTGCAC 3 cut(s) 162, 2190, 3014
VpaK11BI GGWCC 4 cut(s) 287, 381, 791, 1538
VspI ATTAAT 2 cut(s) 477, 2309
XapI RAATTY 5 cut(s) 967, 1351, 1753, 1798, 2121
XceI RCATGY 3 cut(s) 673, 2698, 3371
XcmI CCANNNNNNNNNTGG 1 cut(s) 1773
XhoI CTCGAG 1 cut(s) 2711
XmiI GTMKAC 2 cut(s) 1421, 3157
XmnI GAANNNNTTC 2 cut(s) 854, 2524
ZraI GACGTC 1 cut(s) 1832
ZrmI AGTACT 1 cut(s) 2289
Zsp2I ATGCAT 1 cut(s) 3118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.