Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 34 - 99 | 3.9e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 128 |
| AclWI | GGATC | 2 cut(s) | 113, 324 |
| AcuI | CTGAAG | 1 cut(s) | 102 |
| AfaI | GTAC | 2 cut(s) | 92, 208 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 286 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AluBI | AGCT | 1 cut(s) | 175 |
| AluI | AGCT | 1 cut(s) | 175 |
| AlwI | GGATC | 2 cut(s) | 113, 324 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| AsuC2I | CCSGG | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 2 cut(s) | 182, 301 |
| BauI | CACGAG | 1 cut(s) | 300 |
| BbvI | GCAGC | 1 cut(s) | 100 |
| BccI | CCATC | 1 cut(s) | 101 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BcnI | CCSGG | 1 cut(s) | 284 |
| BfmI | CTRYAG | 1 cut(s) | 114 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 1 cut(s) | 284 |
| BmrFI | CCNGG | 1 cut(s) | 284 |
| BmsI | GCATC | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 292 |
| BpuMI | CCSGG | 1 cut(s) | 284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 286 |
| Bse1I | ACTGG | 1 cut(s) | 13 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 286 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseNI | ACTGG | 1 cut(s) | 13 |
| BseXI | GCAGC | 1 cut(s) | 100 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| BsiSI | CCGG | 1 cut(s) | 284 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 286 |
| Bsp1407I | TGTACA | 1 cut(s) | 90 |
| Bsp143I | GATC | 2 cut(s) | 118, 329 |
| BspMAI | CTGCAG | 1 cut(s) | 118 |
| BspPI | GGATC | 2 cut(s) | 113, 324 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BsrGI | TGTACA | 1 cut(s) | 90 |
| BsrI | ACTGG | 1 cut(s) | 13 |
| BssMI | GATC | 2 cut(s) | 118, 329 |
| BssSI | CACGAG | 1 cut(s) | 300 |
| Bst2BI | CACGAG | 1 cut(s) | 300 |
| Bst6I | CTCTTC | 1 cut(s) | 130 |
| BstAUI | TGTACA | 1 cut(s) | 90 |
| BstDEI | CTNAG | 2 cut(s) | 158, 356 |
| BstKTI | GATC | 2 cut(s) | 121, 332 |
| BstMBI | GATC | 2 cut(s) | 118, 329 |
| BstSCI | CCNGG | 1 cut(s) | 282 |
| BstSFI | CTRYAG | 1 cut(s) | 114 |
| BstV1I | GCAGC | 1 cut(s) | 100 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| CseI | GACGC | 1 cut(s) | 300 |
| Csp6I | GTAC | 2 cut(s) | 91, 207 |
| CviJI | RGCY | 4 cut(s) | 141, 149, 175, 239 |
| CviKI_1 | RGCY | 4 cut(s) | 141, 149, 175, 239 |
| CviQI | GTAC | 2 cut(s) | 91, 207 |
| DdeI | CTNAG | 2 cut(s) | 158, 356 |
| DpnI | GATC | 2 cut(s) | 120, 331 |
| DpnII | GATC | 2 cut(s) | 118, 329 |
| Eam1104I | CTCTTC | 1 cut(s) | 130 |
| EarI | CTCTTC | 1 cut(s) | 130 |
| Eco57I | CTGAAG | 1 cut(s) | 102 |
| FaiI | YATR | 1 cut(s) | 179 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 237, 269 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| GluI | GCNGC | 1 cut(s) | 114 |
| HapII | CCGG | 1 cut(s) | 284 |
| HgaI | GACGC | 1 cut(s) | 300 |
| HinfI | GANTC | 1 cut(s) | 154 |
| HpaII | CCGG | 1 cut(s) | 284 |
| HphI | GGTGA | 2 cut(s) | 182, 301 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188III | TCNNGA | 1 cut(s) | 300 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyAV | CCTTC | 5 cut(s) | 9, 13, 77, 84, 342 |
| HpyCH4V | TGCA | 2 cut(s) | 116, 191 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 356 |
| Kzo9I | GATC | 2 cut(s) | 118, 329 |
| LmnI | GCTCC | 1 cut(s) | 182 |
| LpnPI | CCDG | 2 cut(s) | 93, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 100 |
| LweI | GCATC | 1 cut(s) | 194 |
| MaeIII | GTNAC | 1 cut(s) | 223 |
| MalI | GATC | 2 cut(s) | 120, 331 |
| MboI | GATC | 2 cut(s) | 118, 329 |
| MboII | GAAGA | 5 cut(s) | 48, 58, 144, 147, 357 |
| MfeI | CAATTG | 1 cut(s) | 29 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 1 cut(s) | 29 |
| MnlI | CCTC | 3 cut(s) | 131, 290, 296 |
| MspI | CCGG | 1 cut(s) | 284 |
| MspR9I | CCNGG | 1 cut(s) | 284 |
| MunI | CAATTG | 1 cut(s) | 29 |
| NciI | CCSGG | 1 cut(s) | 284 |
| NdeII | GATC | 2 cut(s) | 118, 329 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 128 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| PstI | CTGCAG | 1 cut(s) | 118 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 2 cut(s) | 92, 208 |
| RsaNI | GTAC | 2 cut(s) | 91, 207 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 2 cut(s) | 118, 329 |
| ScrFI | CCNGG | 1 cut(s) | 284 |
| SetI | ASST | 4 cut(s) | 76, 88, 177, 353 |
| SfaNI | GCATC | 1 cut(s) | 194 |
| SfcI | CTRYAG | 1 cut(s) | 114 |
| SmlI | CTYRAG | 1 cut(s) | 271 |
| SmoI | CTYRAG | 1 cut(s) | 271 |
| Sse9I | AATT | 1 cut(s) | 29 |
| StyD4I | CCNGG | 1 cut(s) | 282 |
| TasI | AATT | 1 cut(s) | 29 |
| TatI | WGTACW | 1 cut(s) | 90 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| TseI | GCWGC | 1 cut(s) | 113 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 128 |