Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0025405

Physical Location & Seq

Genomic Coordinates Forward (+)

58097094 .. 58097663

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCACTCTTCTTTATCACAGCCCGGTGGCTATGCCTTTCTCATCCCACAACTTCAATGCTTCTTTTATTGCATTAATGCTGACTCTTCTTTAGGTGTGGAGACAATATACAAGGAATTCTATTTGAACATTGAAACATGTAATACTCTATCTCTAACATACTCTATATTCAGTCCAAGCAAGACAAGATCGAATGCATACGCCTTTATCAATAGAATTGAAATTGTGTCAATGCCAACTAAACTTTGCTACTCTGTAGCTGCGATTACTGGGGTCAAGTATGTGGGAACCCAAGTCAGCTATCACATCGAAAATAGCACAGCTCTGGAGATGGTCTACCGAATCAACAACGGTGGATGCCAAGTTTTACCGAACGAAGACACTGGCATGTATCGGTATTGGGATGCCACCGATGAATCTTACTTGGATGATATGAGTAGAAAATACATCGTTATACAGATGACCACAAGCATGCAACTCAAATTTGACAATGTATCCAAATACACTGCGCTAGATATAGGGAATGGGTCGTTCAATGGTGATGAACAAAACCATCAACAAGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

4.84

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025405)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030241
rosa_roxburghii	Rroxscaffold_4G00326100
rosa_rugosa	Rorug01G0040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	116, 482
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	56, 127, 134, 221, 535
AluBI	AGCT	4 cut(s)	260, 300, 323, 565
AluI	AGCT	4 cut(s)	260, 300, 323, 565
Alw26I	GTCTC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	116, 482
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	325, 561
BciVI	GTATCC	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	347, 394
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	274, 388
BseGI	GGATG	4 cut(s)	42, 362, 409, 433
BseNI	ACTGG	2 cut(s)	274, 388
BseXI	GCAGC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	274, 388
BssMI	GATC	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	13, 91
BstC8I	GCNNGC	1 cut(s)	473
BstF5I	GGATG	4 cut(s)	42, 362, 409, 433
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	188
BstNSI	RCATGY	3 cut(s)	141, 391, 475
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	505
BtsCI	GGATG	4 cut(s)	42, 362, 409, 433
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	381, 504
Cac8I	GCNNGC	1 cut(s)	473
CfoI	GCGC	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	138, 388, 472
CviJI	RGCY	6 cut(s)	22, 30, 260, 300, 323, 565
CviKI_1	RGCY	6 cut(s)	22, 30, 260, 300, 323, 565
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	13, 91
EarI	CTCTTC	2 cut(s)	13, 91
EcoRI	GAATTC	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	3 cut(s)	141, 391, 475
FatI	CATG	3 cut(s)	137, 387, 471
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	4 cut(s)	29, 369, 416, 440
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	347
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	141, 391, 475
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HinfI	GANTC	3 cut(s)	83, 342, 416
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	4, 72, 197, 475
Hsp92II	CATG	3 cut(s)	141, 391, 475
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	188
LpnPI	CCDG	4 cut(s)	37, 255, 311, 369
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	347, 394
MaeI	CTAG	1 cut(s)	512
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	78, 389
MluCI	AATT	4 cut(s)	116, 216, 222, 482
MlyI	GAGTC	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	386, 470
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	3 cut(s)	141, 391, 475
NlaIV	GGNNCC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	3 cut(s)	141, 391, 475
PaeI	GCATGC	1 cut(s)	475
PciI	ACATGT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	342, 416
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	386, 470
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	5 cut(s)	97, 262, 302, 325, 567
SfaNI	GCATC	2 cut(s)	347, 394
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	386, 470
SphI	GCATGC	1 cut(s)	475
Sse9I	AATT	4 cut(s)	116, 216, 222, 482
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	191, 309
TasI	AATT	4 cut(s)	116, 216, 222, 482
TfiI	GAWTC	2 cut(s)	342, 416
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	388, 511
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	429, 558
TspRI	CASTG	2 cut(s)	388, 511
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	2 cut(s)	116, 482
XceI	RCATGY	3 cut(s)	141, 391, 475
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.