RLG00000035586

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0025427
Physical Location & Seq
Reverse (-)
69054964 .. 69056508
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035586

Sequence Viewer

Length: 513 bp
ATGGCATTTTCTCTGAAACAACGCCAATGGCTCCTCCACGTCTGCTCATGCCGCCACCAAAAGAGGCCTCGCTCCTCCTTCTTCATCACTCTCATCGCTAAGGAACAGCCCAAGGCCGTCAAGGTTGAAGAGGTGAATGGGGATGAGTATGTGAGATTGCTGAAGAAGAAGAAGAACAAGAACAAGAGGAAGTTCGGGAATAGCGAGCTAGTGAAATTGGGGGTTGATATTTTGTTGCGCCAAAAGAGAACAATGAGTGGTGGTGCTTCTGGAGGTGCAGCCGGGACTACGCCTCTGGAGGTCCTGGAAGAGGAAGCAGATAGGGCAGAATATGGCCGGGTAGAGGCAGAAGATGCAGAAGGCATCTTGGACCCAAGAACTAATCAGCTGAGGGCCCAGACAGCCTACAGGGCATTGCAACCCCTCTCTAGCGACATTTATAATTCAATAAATAACACTAAAATAATGGACAGCCAACAAGGCATTGGAGCCCCTTCCTGGTTACGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

9.69

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025427)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035586
rosa_multiflora Rmu_sc0001617.1_g000005 Rmu_sc0003454.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 441, 511
AciI CCGC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 310, 343, 498
AgsI TTSAA 2 cut(s) 128, 447
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 2 cut(s) 303, 497
AluBI AGCT 2 cut(s) 208, 388
AluI AGCT 2 cut(s) 208, 388
AoxI GGCC 4 cut(s) 65, 114, 334, 393
ApaI GGGCCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 4 cut(s) 301, 370, 393, 394
AsuC2I CCSGG 2 cut(s) 283, 338
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 2 cut(s) 301, 370
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 397, 493
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 305, 499
BcnI CCSGG 2 cut(s) 283, 338
BfaI CTAG 2 cut(s) 209, 429
BfmI CTRYAG 1 cut(s) 406
BglI GCCNNNNNGGC 2 cut(s) 410, 480
BisI GCNGC 2 cut(s) 52, 279
BlsI GCNGC 2 cut(s) 53, 280
Bme1390I CCNGG 4 cut(s) 283, 305, 338, 499
Bme18I GGWCC 2 cut(s) 301, 370
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 301, 370, 393, 394
BmiI GGNNCC 4 cut(s) 32, 372, 395, 490
BmrFI CCNGG 4 cut(s) 283, 305, 338, 499
BmsI GCATC 2 cut(s) 343, 372
BpmI CTGGAG 2 cut(s) 291, 317
Bpu10I CCTNAGC 2 cut(s) 99, 389
BpuMI CCSGG 2 cut(s) 283, 338
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 343, 498
Bse3DI GCAATG 1 cut(s) 413
BseBI CCWGG 2 cut(s) 305, 499
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 310, 343, 498
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 23, 64
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 67, 116, 336, 395
BsiSI CCGG 2 cut(s) 282, 337
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 3 cut(s) 310, 343, 498
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 4 cut(s) 67, 116, 336, 395
Bsp120I GGGCCC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 397, 493
BspACI CCGC 1 cut(s) 52
BspANI GGCC 4 cut(s) 67, 116, 336, 395
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 32, 372, 395, 490
BsrDI GCAATG 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 305, 499
Bst6I CTCTTC 2 cut(s) 123, 303
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 99, 389
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 240
BstMWI GCNNNNNNNGC 6 cut(s) 51, 323, 353, 401, 410, 480
BstNI CCWGG 2 cut(s) 305, 499
BstSCI CCNGG 4 cut(s) 281, 303, 336, 497
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 4 cut(s) 67, 116, 336, 395
BtgZI GCGATG 1 cut(s) 79
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 4 cut(s) 301, 370, 393, 394
CviAII CATG 1 cut(s) 48
DdeI CTNAG 2 cut(s) 99, 389
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 123, 303
EarI CTCTTC 2 cut(s) 123, 303
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 397, 493
Eco47I GGWCC 2 cut(s) 301, 370
Eco57I CTGAAG 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 301, 393
EcoRII CCWGG 2 cut(s) 303, 497
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 2 cut(s) 397, 493
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 51
FaiI YATR 5 cut(s) 49, 150, 333, 441, 511
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 52, 279
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 2 cut(s) 397, 493
Fsp4HI GCNGC 2 cut(s) 52, 279
FspBI CTAG 2 cut(s) 209, 429
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 52, 279
GsuI CTGGAG 2 cut(s) 291, 317
HaeIII GGCC 4 cut(s) 67, 116, 336, 395
HapII CCGG 2 cut(s) 282, 337
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HpaII CCGG 2 cut(s) 282, 337
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 196, 270, 296
HpyAV CCTTC 3 cut(s) 88, 353, 504
HpyCH4IV ACGT 2 cut(s) 39, 505
HpyCH4V TGCA 3 cut(s) 278, 356, 418
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 323, 353, 401, 410, 480
HpyF3I CTNAG 2 cut(s) 99, 389
HpySE526I ACGT 2 cut(s) 39, 505
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 36, 77, 488
LpnPI CCDG 9 cut(s) 255, 281, 290, 295, 317, 350, 394, 410, 484
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 343, 372
MaeI CTAG 2 cut(s) 209, 429
MaeII ACGT 2 cut(s) 39, 505
MaeIII GTNAC 1 cut(s) 501
MboII GAAGA 8 cut(s) 73, 140, 175, 178, 181, 184, 320, 362
MhlI GDGCHC 2 cut(s) 397, 493
MluCI AATT 2 cut(s) 215, 442
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 2 cut(s) 282, 337
MspR9I CCNGG 4 cut(s) 283, 305, 338, 499
MvaI CCWGG 2 cut(s) 305, 499
MwoI GCNNNNNNNGC 6 cut(s) 51, 323, 353, 401, 410, 480
NciI CCSGG 2 cut(s) 283, 338
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 4 cut(s) 32, 372, 395, 490
PceI AGGCCT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 53, 280
PpuMI RGGWCCY 1 cut(s) 301
PsiI TTATAA 2 cut(s) 441, 511
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 2 cut(s) 303, 497
PspGI CCWGG 2 cut(s) 303, 497
PspN4I GGNNCC 4 cut(s) 32, 372, 395, 490
PspOMI GGGCCC 1 cut(s) 393
PspPI GGNCC 4 cut(s) 301, 370, 393, 394
PspPPI RGGWCCY 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 388
SatI GCNGC 2 cut(s) 52, 279
Sau96I GGNCC 4 cut(s) 301, 370, 393, 394
ScrFI CCNGG 4 cut(s) 283, 305, 338, 499
SduI GDGCHC 2 cut(s) 397, 493
SetI ASST 8 cut(s) 42, 126, 135, 210, 277, 303, 390, 508
SfaNI GCATC 2 cut(s) 343, 372
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 2 cut(s) 301, 370
Sse9I AATT 2 cut(s) 215, 442
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 52
SspMI CTAG 2 cut(s) 209, 429
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 4 cut(s) 281, 303, 336, 497
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 42, 508
TasI AATT 2 cut(s) 215, 442
TauI GCSGC 1 cut(s) 54
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 301, 370
XagI CCTNNNNNAGG 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XspI CTAG 2 cut(s) 209, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.