Rmu_sc0001617.1_g000005

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001617.1
OG0025427
Physical Location & Seq
Forward (+)
21363 .. 24549
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001617.1_g000005.1.cds

Sequence Viewer

Length: 783 bp
atggcattttctctgaaacaccgccagtggctcctccacgtctacttacgccgccgccaaaagaggcctcactcctccttcttcgacactctcgtcgctaaggctcatcccaaggccgttaaggttgaagaggtggatagggatgagtatgtgagattgctggagaagaagaagaacaagaggaacaatgagtggtggtgcttctggaggtggatagccgggactacgcctttggaggtcctgaaagaggaagcagatagggcagaatctggtagggtagaggcagaagacgcaggaggtgtagaggcggcggagggtggctcgatttgggccaacattcactggaatcaagtcaccggccgccacccacctgacttctctaaaaacctcgctggatgttcccaaagagatcgtcagagatctaatagcctaatccatctccatgtctgccacaataagaagaacaagaagacgaggctgggtgcagacaccttatcttcatcctcgttggcgttctcattggctccaccttcttcatcttccagccccctctctctcgactctccccttccgagcccaatccctctatccctagatccttctcctccgttcgcgaccgaatcaacaccgcctctttcttcaccgacctttatgatcgtcgtcatcggtggcgtcggcttggttgggtcttacctcgttgataagttactctccagaggtaacgatgtgattgccatcgacaatttcttcacctggattaaagagaatgtggtgcaccattga

Protein Analysis

260

Amino Acids

29.15

Weight (kDa)

9.26

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025427)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035586
rosa_multiflora Rmu_sc0001617.1_g000005 Rmu_sc0003454.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 614
AciI CCGC 7 cut(s) 22, 52, 55, 308, 311, 361, 629
AclWI GGATC 1 cut(s) 590
AcoI YGGCCR 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 128
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 752
Alw21I GWGCWC 1 cut(s) 777
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 1 cut(s) 590
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 4 cut(s) 65, 114, 330, 358
ApaLI GTGCAC 1 cut(s) 773
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 397, 429
AspS9I GGNCC 2 cut(s) 238, 330
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 346, 633, 742
AvaII GGWCC 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 578
BbsI GAAGAC 2 cut(s) 294, 476
Bbv12I GWGCWC 1 cut(s) 777
BccI CCATC 2 cut(s) 444, 743
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 754
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 419
BisI GCNGC 4 cut(s) 52, 55, 309, 361
BlsI GCNGC 4 cut(s) 53, 56, 310, 362
Bme1390I CCNGG 2 cut(s) 220, 754
Bme18I GGWCC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 238, 330
BmiI GGNNCC 2 cut(s) 32, 525
BmrFI CCNGG 2 cut(s) 220, 754
BpiI GAAGAC 2 cut(s) 294, 476
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 3 cut(s) 182, 226, 697
Bpu10I CCTNAGC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 25, 347
Bse8I GATNNNNATC 1 cut(s) 734
BseBI CCWGG 1 cut(s) 754
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 4 cut(s) 106, 148, 401, 500
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 25, 347
BseRI GAGGAG 3 cut(s) 23, 64, 594
BseSI GKGCMC 1 cut(s) 777
BseX3I CGGCCG 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 614
Bsh1285I CGRYCG 2 cut(s) 361, 618
BshFI GGCC 4 cut(s) 67, 116, 332, 360
BsiEI CGRYCG 2 cut(s) 361, 618
BsiHKAI GWGCWC 1 cut(s) 777
BsiSI CCGG 2 cut(s) 219, 357
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 4 cut(s) 67, 116, 332, 360
Bsp1286I GDGCHC 2 cut(s) 578, 777
Bsp143I GATC 4 cut(s) 409, 419, 595, 654
Bsp68I TCGCGA 1 cut(s) 614
BspACI CCGC 7 cut(s) 22, 52, 55, 308, 311, 361, 629
BspANI GGCC 4 cut(s) 67, 116, 332, 360
BspFNI CGCG 1 cut(s) 614
BspLI GGNNCC 2 cut(s) 32, 525
BspPI GGATC 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 25, 347
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 409, 419, 595, 654
BssNI GRCGYC 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 672
BstDEI CTNAG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 106, 148, 401, 500
BstFNI CGCG 1 cut(s) 614
BstKTI GATC 4 cut(s) 412, 422, 598, 657
BstMBI GATC 4 cut(s) 409, 419, 595, 654
BstMCI CGRYCG 2 cut(s) 361, 618
BstMWI GCNNNNNNNGC 2 cut(s) 260, 290
BstNI CCWGG 1 cut(s) 754
BstSCI CCNGG 2 cut(s) 218, 752
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 614
BstV2I GAAGAC 2 cut(s) 294, 476
BstX2I RGATCY 2 cut(s) 419, 595
BstYI RGATCY 2 cut(s) 419, 595
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 4 cut(s) 67, 116, 332, 360
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 4 cut(s) 106, 148, 401, 500
BtsIMutI CAGTG 2 cut(s) 32, 340
BtuMI TCGCGA 1 cut(s) 614
CaiI CAGNNNCTG 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 238, 330
CseI GACGC 2 cut(s) 299, 661
CviAII CATG 1 cut(s) 443
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 411, 421, 597, 656
DpnII GATC 4 cut(s) 409, 419, 595, 654
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 358
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 752
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 446
FaiI YATR 3 cut(s) 150, 444, 653
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 52, 55, 309, 361
FokI GGATG 4 cut(s) 93, 155, 408, 487
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 4 cut(s) 52, 55, 309, 361
FspBI CTAG 1 cut(s) 593
GluI GCNGC 4 cut(s) 52, 55, 309, 361
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 3 cut(s) 182, 226, 697
HaeIII GGCC 4 cut(s) 67, 116, 332, 360
HapII CCGG 2 cut(s) 219, 357
HgaI GACGC 2 cut(s) 299, 661
Hin1I GRCGYC 1 cut(s) 672
Hin1II CATG 1 cut(s) 446
HinfI GANTC 4 cut(s) 266, 346, 560, 620
HpaII CCGG 2 cut(s) 219, 357
HphI GGTGA 3 cut(s) 346, 633, 742
Hpy166II GTNNAC 2 cut(s) 43, 775
Hpy188I TCNGA 3 cut(s) 15, 417, 573
Hpy188III TCNNGA 5 cut(s) 205, 241, 557, 613, 714
Hpy8I GTNNAC 2 cut(s) 43, 775
Hpy99I CGWCG 3 cut(s) 98, 662, 677
HpyAV CCTTC 4 cut(s) 88, 540, 578, 609
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 485, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 290
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 672
Hsp92II CATG 1 cut(s) 446
Kzo9I GATC 4 cut(s) 409, 419, 595, 654
LmnI GCTCC 2 cut(s) 36, 529
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 352, 705, 719
MalI GATC 4 cut(s) 411, 421, 597, 656
MboI GATC 4 cut(s) 409, 419, 595, 654
MflI RGATCY 2 cut(s) 419, 595
MhlI GDGCHC 2 cut(s) 578, 777
MluCI AATT 1 cut(s) 742
MlyI GAGTC 1 cut(s) 554
MseI TTAA 2 cut(s) 120, 759
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 2 cut(s) 219, 357
MspR9I CCNGG 2 cut(s) 220, 754
MvaI CCWGG 1 cut(s) 754
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 2 cut(s) 260, 290
NciI CCSGG 1 cut(s) 220
NdeII GATC 4 cut(s) 409, 419, 595, 654
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 2 cut(s) 32, 525
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 614
PceI AGGCCT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 3 cut(s) 266, 346, 620
PkrI GCNGC 4 cut(s) 53, 56, 310, 362
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 752
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 752
PspN4I GGNNCC 2 cut(s) 32, 525
PspPI GGNCC 2 cut(s) 238, 330
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 419, 595
RruI TCGCGA 1 cut(s) 614
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 2 cut(s) 120, 759
SatI GCNGC 4 cut(s) 52, 55, 309, 361
Sau3AI GATC 4 cut(s) 409, 419, 595, 654
Sau96I GGNCC 2 cut(s) 238, 330
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 220, 754
SduI GDGCHC 2 cut(s) 578, 777
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 441
Sse9I AATT 1 cut(s) 742
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 7 cut(s) 22, 52, 55, 308, 311, 361, 629
SspMI CTAG 1 cut(s) 593
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 218, 752
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 84, 323, 558, 738
TaqII GACCGA 1 cut(s) 632
TasI AATT 1 cut(s) 742
TauI GCSGC 4 cut(s) 54, 57, 311, 363
TfiI GAWTC 3 cut(s) 266, 346, 620
Tru1I TTAA 2 cut(s) 120, 759
Tru9I TTAA 2 cut(s) 120, 759
TscAI CASTG 2 cut(s) 32, 347
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 489, 525
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 2 cut(s) 32, 347
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.