Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003454.1

Orthogroup ID

OG0025427

Physical Location & Seq

Genomic Coordinates Reverse (-)

63475 .. 66611

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003454.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggcattttctctgaaacaccgccagtggctcctccacgtctacttacgccgccgccaaaagaggcctcactcctccttcttcgatactcccgtcgctaaggcacagcccaaggccgttaaggttgaagaggtggatagggatgagtatgtgagattgctggagaagaagaagaacaagaggaacaacgagtggagaacaacgagtggtggtgcttctggaggtgcagccgggactacgcctctggaggtcctggaaaaggaagcagatagggcagaatctggtagggtggaggcagaagacgcaggaagtgtagaggcggcggagggtggcttgaacaagaagacgaggctgggtgcagacacctcatcttcatcctcgttggcattctcattggctccaccttcttcatcttccagccccttctctcccgactctccccttccgagcccaatccctctatccctagatccttctcctccgttcgcgaccgaatcaacaccgcctctttcttcaccgacctttatgatcgtcgtcaccggtggcgccggcttggttgggtcttacctcgttgataagttactctccagaggaaacgatgtgattgccatcgacaatttcttcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

209

Amino Acids

22.43

Weight (kDa)

7.94

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025427)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035586
rosa_multiflora	Rmu_sc0001617.1_g000005 Rmu_sc0003454.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	488
AciI	CCGC	6 cut(s)	22, 52, 55, 320, 323, 503
AclWI	GGATC	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	128, 337
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	252
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	65, 114
ApeKI	GCWGC	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	507, 529, 616
AvaII	GGWCC	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	306, 350
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	232
BfaI	CTAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	4 cut(s)	52, 55, 228, 321
BlsI	GCNGC	4 cut(s)	53, 56, 229, 322
Bme1390I	CCNGG	2 cut(s)	232, 254
Bme18I	GGWCC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	3 cut(s)	32, 399, 547
BmrFI	CCNGG	2 cut(s)	232, 254
BpiI	GAAGAC	2 cut(s)	306, 350
BpmI	CTGGAG	4 cut(s)	182, 240, 266, 571
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	2 cut(s)	539, 548
Bse1I	ACTGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	148, 374
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	23, 64, 468
BseXI	GCAGC	1 cut(s)	239
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	2 cut(s)	246, 378
Bsh1236I	CGCG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	67, 116
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	231, 540, 549
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	67, 116
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	469, 528
Bsp68I	TCGCGA	1 cut(s)	488
BspACI	CCGC	6 cut(s)	22, 52, 55, 320, 323, 503
BspANI	GGCC	2 cut(s)	67, 116
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	3 cut(s)	32, 399, 547
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	545
BsrFI	RCCGGY	2 cut(s)	539, 548
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	2 cut(s)	539, 548
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	469, 528
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	148, 374
BstFNI	CGCG	1 cut(s)	488
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	2 cut(s)	472, 531
BstMBI	GATC	2 cut(s)	469, 528
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 302
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	230, 252
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	2 cut(s)	306, 350
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	67, 116
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	148, 374
BtsIMutI	CAGTG	1 cut(s)	32
BtuMI	TCGCGA	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	2 cut(s)	539, 548
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	311
CspAI	ACCGGT	1 cut(s)	539
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	1 cut(s)	547
DpnI	GATC	2 cut(s)	471, 530
DpnII	GATC	2 cut(s)	469, 528
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	452
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	2 cut(s)	150, 527
FaqI	GGGAC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	52, 55, 228, 321
FokI	GGATG	2 cut(s)	155, 361
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	4 cut(s)	52, 55, 228, 321
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	52, 55, 228, 321
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	4 cut(s)	182, 240, 266, 571
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	67, 116
HapII	CCGG	3 cut(s)	231, 540, 549
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	546
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	3 cut(s)	278, 434, 494
HpaII	CCGG	3 cut(s)	231, 540, 549
HphI	GGTGA	3 cut(s)	507, 529, 616
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	15, 447
Hpy188III	TCNNGA	5 cut(s)	219, 245, 431, 487, 588
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	98, 536
HpyAV	CCTTC	5 cut(s)	88, 414, 433, 452, 483
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	227, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 302
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	546
HspAI	GCGC	1 cut(s)	546
KasI	GGCGCC	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	469, 528
LmnI	GCTCC	2 cut(s)	36, 403
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	535, 579
MalI	GATC	2 cut(s)	471, 530
MboI	GATC	2 cut(s)	469, 528
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	1 cut(s)	616
Mly113I	GGCGCC	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	548
MseI	TTAA	1 cut(s)	120
MspI	CCGG	3 cut(s)	231, 540, 549
MspR9I	CCNGG	2 cut(s)	232, 254
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	272, 302
NaeI	GCCGGC	1 cut(s)	550
NarI	GGCGCC	1 cut(s)	546
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	469, 528
NgoMIV	GCCGGC	1 cut(s)	548
NlaIV	GGNNCC	3 cut(s)	32, 399, 547
NmuCI	GTSAC	1 cut(s)	535
NruI	TCGCGA	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	278, 494
PfoI	TCCNGGA	1 cut(s)	252
PinAI	ACCGGT	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	53, 56, 229, 322
PleI	GAGTC	1 cut(s)	428
PluTI	GGCGCC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	32, 399, 547
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	469
RruI	TCGCGA	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	52, 55, 228, 321
Sau3AI	GATC	2 cut(s)	469, 528
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	232, 254
SduI	GDGCHC	1 cut(s)	452
SfoI	GGCGCC	1 cut(s)	547
SgrAI	CRCCGGYG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	6 cut(s)	22, 52, 55, 320, 323, 503
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	1 cut(s)	467
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	230, 252
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	84, 612
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	616
TauI	GCSGC	3 cut(s)	54, 57, 323
TfiI	GAWTC	2 cut(s)	278, 494
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	363, 399
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.