Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8019486.1

Orthogroup ID

OG0022716

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 538

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8019486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

gaatccaacaccagaacattccaaagctgctggtatagcagatgacttcaaaatcataaccgaggcaacaattgcacctgctagcttgaatggaacaactgttagcttttttgttggcaaaattgccttcccagaatccgtaggaaagcttgaactcaacagcactgaccccagagcaaacccatcagtgacattcaactacctatcaagcgagaaagacttggcagaatgtgtgaagatgaccgagctgcttgagctagctttaaggtccaaatcaattgcttctttcgtgggttcgaatgaataccgaaacaagacgatgcctactaaagacgagctcgaggaactctgcaagacgactgtccgtaccgtctaccactaccatggtggttgcactgtggggtcggtggtcgacaagaattatagggttcatggtgttaaaggcttgagagtgattgatgggtcaaccttcctggaatcaccaggcacaaacccaatggccactgtgctgatgcttggaagataccaagggctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

6.48

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022716)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439651
rosa_multiflora	Rmu_co8019486.1_g000001 Rmu_sc0007322.1_g000003
rosa_samantha	Rh5DG045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	373, 412
AcoI	YGGCCR	1 cut(s)	499
AfaI	GTAC	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	50, 89, 153, 197
AjnI	CCWGG	2 cut(s)	472, 482
AluBI	AGCT	8 cut(s)	27, 85, 106, 149, 248, 257, 261, 338
AluI	AGCT	8 cut(s)	27, 85, 106, 149, 248, 257, 261, 338
Alw21I	GWGCWC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	27, 248
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	297
AsuNHI	GCTAGC	2 cut(s)	81, 257
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	2 cut(s)	340, 535
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	14, 235
BccI	CCATC	2 cut(s)	191, 453
BciT130I	CCWGG	2 cut(s)	474, 484
BfaI	CTAG	2 cut(s)	82, 258
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	28, 249
BlsI	GCNGC	2 cut(s)	29, 250
Bme1390I	CCNGG	2 cut(s)	474, 484
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	474, 484
BmsI	GCATC	2 cut(s)	310, 502
BmtI	GCTAGC	2 cut(s)	85, 261
BoxI	GACNNNNGTC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	273, 467
BsaJI	CCNNGG	3 cut(s)	61, 383, 527
BseBI	CCWGG	2 cut(s)	474, 484
BseDI	CCNNGG	3 cut(s)	61, 383, 527
BseXI	GCAGC	2 cut(s)	14, 235
BshFI	GGCC	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	339
BsnI	GGCC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	340, 535
Bsp19I	CCATGG	1 cut(s)	383
BspANI	GGCC	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	2 cut(s)	85, 261
BspT104I	TTCGAA	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	61, 383, 527
BssT1I	CCWWGG	2 cut(s)	383, 527
Bst2UI	CCWGG	2 cut(s)	474, 484
Bst4CI	ACNGT	5 cut(s)	101, 362, 371, 398, 506
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	83, 259
BstDSI	CCRYGG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 72, 254
BstNI	CCWGG	2 cut(s)	474, 484
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	472, 482
BstV1I	GCAGC	2 cut(s)	14, 235
BstXI	CCANNNNNNTGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	383
BtsIMutI	CAGTG	4 cut(s)	163, 193, 394, 502
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	83, 259
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	384, 432
CviQI	GTAC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	383, 527
Eco24I	GRGCYC	2 cut(s)	340, 535
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	472, 482
EcoT14I	CCWWGG	2 cut(s)	383, 527
EcoT38I	GRGCYC	2 cut(s)	340, 535
ErhI	CCWWGG	2 cut(s)	383, 527
FaeI	CATG	2 cut(s)	387, 435
FaiI	YATR	5 cut(s)	36, 57, 385, 424, 433
FatI	CATG	2 cut(s)	383, 431
FblI	GTMKAC	2 cut(s)	373, 412
Fnu4HI	GCNGC	2 cut(s)	28, 249
FriOI	GRGCYC	2 cut(s)	340, 535
Fsp4HI	GCNGC	2 cut(s)	28, 249
FspBI	CTAG	2 cut(s)	82, 258
GluI	GCNGC	2 cut(s)	28, 249
HaeIII	GGCC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	387, 435
HincII	GTYRAC	2 cut(s)	413, 466
HindII	GTYRAC	2 cut(s)	413, 466
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	3 cut(s)	2, 135, 477
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	3 cut(s)	374, 413, 466
Hpy8I	GTNNAC	3 cut(s)	374, 413, 466
HpyAV	CCTTC	2 cut(s)	137, 479
HpyCH4III	ACNGT	5 cut(s)	101, 362, 371, 398, 506
HpyCH4V	TGCA	3 cut(s)	75, 352, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 72, 254
Hsp92II	CATG	2 cut(s)	387, 435
LpnPI	CCDG	9 cut(s)	16, 25, 91, 145, 185, 459, 469, 486, 496
Lsp1109I	GCAGC	2 cut(s)	14, 235
LweI	GCATC	2 cut(s)	310, 502
MaeI	CTAG	2 cut(s)	82, 258
MaeIII	GTNAC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	248, 532
MfeI	CAATTG	2 cut(s)	70, 277
MhlI	GDGCHC	2 cut(s)	340, 535
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	70, 121, 277, 419
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	56, 335
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	2 cut(s)	264, 439
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	474, 484
MunI	CAATTG	2 cut(s)	70, 277
MvaI	CCWGG	2 cut(s)	474, 484
MwoI	GCNNNNNNNGC	3 cut(s)	36, 72, 254
NcoI	CCATGG	1 cut(s)	383
NheI	GCTAGC	2 cut(s)	81, 257
NlaIII	CATG	2 cut(s)	387, 435
NmuCI	GTSAC	1 cut(s)	188
NspV	TTCGAA	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	2, 135, 477
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	29, 250
PshAI	GACNNNNGTC	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	472, 482
PspGI	CCWGG	2 cut(s)	472, 482
PspPI	GGNCC	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	339
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	264, 439
SatI	GCNGC	2 cut(s)	28, 249
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	474, 484
SduI	GDGCHC	2 cut(s)	340, 535
SfaNI	GCATC	2 cut(s)	310, 502
Sfr274I	CTCGAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	297
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	3 cut(s)	252, 339, 446
SmoI	CTYRAG	3 cut(s)	252, 339, 446
Sse9I	AATT	4 cut(s)	70, 121, 277, 419
SspMI	CTAG	2 cut(s)	82, 258
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	472, 482
StyI	CCWWGG	2 cut(s)	383, 527
TaaI	ACNGT	5 cut(s)	101, 362, 371, 398, 506
TaqI	TCGA	3 cut(s)	297, 340, 412
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	70, 121, 277, 419
TfiI	GAWTC	3 cut(s)	2, 135, 477
Tru1I	TTAA	2 cut(s)	264, 439
Tru9I	TTAA	2 cut(s)	264, 439
TscAI	CASTG	4 cut(s)	170, 193, 401, 509
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	27, 248
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	316, 420
TspGWI	ACGGA	2 cut(s)	128, 354
TspRI	CASTG	4 cut(s)	170, 193, 401, 509
VpaK11BI	GGWCC	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	339
XmiI	GTMKAC	2 cut(s)	373, 412
XspI	CTAG	2 cut(s)	82, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.