Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007322.1

Orthogroup ID

OG0022716

Physical Location & Seq

Genomic Coordinates Forward (+)

22886 .. 23518

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007322.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgcaagacaatactgctattcaagtctttgtcaactacaaccagcaaaatccaacaccagaccctgccaaagttgctggtatagcagatgacttcaaaatcataatcgaggcagcaatcatacctattagcttgaatggaacaactgctagctattttattggcaaacttgccttcccagaatccgtaggaaagcttgaactcaacagcaccgaccccagagcaaacccatcagtgacgttcaactacctatcaagcgagaaagacttggcagaatgtgtgaagatgaccgagctgcttgagcttgctttaaggtccaaatcaattgcttccttagtgggttcgaatgaataccgaaacaagccgatgcctactaaagacgagctccagaaactctgcaagacgactatcagtaccatctggcactaccatggtggttgcactgtggggtcagtggttgacaagaattatagggtttatggtgttaaaggcttgagagtgatcgatgggtcaaccttcctggaatcaccaggcacaaacccaatggccactgtgctgatgcttggaagataccaagggctcaaaattcttcaagaaagaaaagatgcttcctttatcaatcccataacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

210

Amino Acids

23.07

Weight (kDa)

7.65

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022716)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439651
rosa_multiflora	Rmu_co8019486.1_g000001 Rmu_sc0007322.1_g000003
rosa_samantha	Rh5DG045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	585
AfaI	GTAC	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	23, 97, 136, 200, 244, 593
AjnI	CCWGG	2 cut(s)	519, 529
AluBI	AGCT	6 cut(s)	132, 153, 196, 295, 304, 385
AluI	AGCT	6 cut(s)	132, 153, 196, 295, 304, 385
Alw21I	GWGCWC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	113, 295
ApoI	RAATTY	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	519
AsuII	TTCGAA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	2 cut(s)	387, 582
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	125, 282
BccI	CCATC	3 cut(s)	238, 425, 500
BciT130I	CCWGG	2 cut(s)	521, 531
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	114, 296
BlsI	GCNGC	2 cut(s)	115, 297
Bme1390I	CCNGG	2 cut(s)	521, 531
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	2 cut(s)	521, 531
BmsI	GCATC	3 cut(s)	357, 549, 595
BmtI	GCTAGC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	320, 514
Bsa29I	ATCGAT	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	430, 574
BseBI	CCWGG	2 cut(s)	521, 531
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	430, 574
BseXI	GCAGC	2 cut(s)	125, 282
BshFI	GGCC	1 cut(s)	548
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	387, 582
Bsp143I	GATC	1 cut(s)	501
Bsp19I	CCATGG	1 cut(s)	430
BspANI	GGCC	1 cut(s)	548
BspDI	ATCGAT	1 cut(s)	504
BspOI	GCTAGC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	430, 574
BssMI	GATC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	430, 574
Bst2UI	CCWGG	2 cut(s)	521, 531
Bst4CI	ACNGT	2 cut(s)	445, 553
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	151, 306
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	430
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 301
BstNI	CCWGG	2 cut(s)	521, 531
BstSCI	CCNGG	2 cut(s)	519, 529
BstV1I	GCAGC	2 cut(s)	125, 282
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	430
BtsIMutI	CAGTG	4 cut(s)	240, 441, 459, 549
Cac8I	GCNNGC	2 cut(s)	151, 306
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	431
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	430, 574
Eco24I	GRGCYC	2 cut(s)	387, 582
Eco47I	GGWCC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	519, 529
EcoT14I	CCWWGG	2 cut(s)	430, 574
EcoT38I	GRGCYC	2 cut(s)	387, 582
ErhI	CCWWGG	2 cut(s)	430, 574
FaeI	CATG	1 cut(s)	434
FaiI	YATR	7 cut(s)	83, 104, 122, 432, 471, 480, 626
FatI	CATG	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	114, 296
FriOI	GRGCYC	2 cut(s)	387, 582
Fsp4HI	GCNGC	2 cut(s)	114, 296
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	114, 296
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	548
Hin1II	CATG	1 cut(s)	434
HincII	GTYRAC	3 cut(s)	34, 460, 513
HindII	GTYRAC	3 cut(s)	34, 460, 513
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	182, 524
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	3 cut(s)	34, 460, 513
Hpy188III	TCNNGA	2 cut(s)	388, 593
Hpy8I	GTNNAC	3 cut(s)	34, 460, 513
HpyAV	CCTTC	2 cut(s)	184, 526
HpyCH4III	ACNGT	2 cut(s)	445, 553
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	4, 399, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 301
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	434
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	2 cut(s)	125, 282
LweI	GCATC	3 cut(s)	357, 549, 595
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	3 cut(s)	295, 579, 581
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	387, 582
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	3 cut(s)	324, 466, 585
MluNI	TGGCCA	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	311, 486
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	521, 531
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	521, 531
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 301
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	1 cut(s)	501
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	182, 524
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	2 cut(s)	115, 297
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	519, 529
PspGI	CCWGG	2 cut(s)	519, 529
PspPI	GGNCC	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	311, 486
SatI	GCNGC	2 cut(s)	114, 296
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	521, 531
SduI	GDGCHC	2 cut(s)	387, 582
SfaNI	GCATC	3 cut(s)	357, 549, 595
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	299, 493
SmoI	CTYRAG	2 cut(s)	299, 493
Sse9I	AATT	3 cut(s)	324, 466, 585
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	519, 529
StyI	CCWWGG	2 cut(s)	430, 574
TaaI	ACNGT	2 cut(s)	445, 553
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	108, 344, 504
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	324, 466, 585
TfiI	GAWTC	2 cut(s)	182, 524
Tru1I	TTAA	2 cut(s)	311, 486
Tru9I	TTAA	2 cut(s)	311, 486
TscAI	CASTG	4 cut(s)	240, 448, 459, 556
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	113, 295
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	4 cut(s)	240, 448, 459, 556
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	585
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.