Rmu_co8057844.1_g000001

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8057844.1
OG0021614
Physical Location & Seq
Reverse (-)
1 .. 492
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8057844.1_g000001.1.cds

Sequence Viewer

Length: 418 bp
atggcatatcccagcagtttggattgcatagcttcttttgactttgacaatgagttgtttcagtcagttccaccactgcttcttcagctggatacttgtgactgggggatgggggttttgggagatattctttctgtgtgtggtactcacgataatcatatcgatgtgtggacagtggaagatcatgatgcacaaaagtcctggaccaaaaaggtttatattaatatggatgatgggggaggactactaggctggccaaagggcacatatataccgatgaaatacttaacagatggggcagatggggctctattgatgtttaattgggatattgatgccttggtttactatcacccaagaagaaactacagatcgatcatttatcttgaccttaagattagaggtgtatacggagaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

139

Amino Acids

15.8

Weight (kDa)

4.54

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021614)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8057844.1_g000001 Rmu_ssc0000019.1_g000001
rosa_samantha Rh2BG355100 Rh2DG372800
rosa_wichuraiana Rw2G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 145
AflII CTTAAG 1 cut(s) 392
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 2 cut(s) 32, 88
AluI AGCT 2 cut(s) 32, 88
AoxI GGCC 1 cut(s) 254
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 256
BanII GRGCYC 1 cut(s) 310
BccI CCATC 4 cut(s) 103, 227, 287, 296
BciT130I CCWGG 1 cut(s) 202
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 367
BfrI CTTAAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 202
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 178, 325
BmuI ACTGGG 1 cut(s) 112
Bsa29I ATCGAT 2 cut(s) 162, 374
BsaJI CCNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 202
BseCI ATCGAT 2 cut(s) 162, 374
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 114, 235
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 1 cut(s) 256
BshVI ATCGAT 2 cut(s) 162, 374
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 266, 310
Bsp143I GATC 3 cut(s) 181, 371, 375
BspANI GGCC 1 cut(s) 256
BspDI ATCGAT 2 cut(s) 162, 374
BspHI TCATGA 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 181, 371, 375
BssNAI GTATAC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 254
BstF5I GGATG 2 cut(s) 114, 235
BstKTI GATC 3 cut(s) 184, 374, 378
BstMBI GATC 3 cut(s) 181, 371, 375
BstMWI GCNNNNNNNGC 2 cut(s) 85, 305
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 409
Bsu15I ATCGAT 2 cut(s) 162, 374
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 256
BsuTUI ATCGAT 2 cut(s) 162, 374
BtsCI GGATG 2 cut(s) 114, 235
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 74, 180
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 204
ClaI ATCGAT 2 cut(s) 162, 374
Csp6I GTAC 1 cut(s) 144
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 32, 88, 252, 256, 308
CviKI_1 RGCY 5 cut(s) 32, 88, 252, 256, 308
CviQI GTAC 1 cut(s) 144
DpnI GATC 3 cut(s) 183, 373, 377
DpnII GATC 3 cut(s) 181, 371, 375
EaeI YGGCCR 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 188
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 408
FokI GGATG 2 cut(s) 121, 242
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 1 cut(s) 248
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 256
Hin1II CATG 1 cut(s) 188
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 171, 346, 409
Hpy188III TCNNGA 3 cut(s) 149, 185, 386
Hpy8I GTNNAC 3 cut(s) 171, 346, 409
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 27, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 305
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 3 cut(s) 181, 371, 375
LpnPI CCDG 6 cut(s) 25, 74, 88, 187, 214, 238
LweI GCATC 2 cut(s) 178, 325
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 183, 373, 377
MboI GATC 3 cut(s) 181, 371, 375
MboII GAAGA 3 cut(s) 74, 191, 372
MhlI GDGCHC 2 cut(s) 266, 310
MlsI TGGCCA 1 cut(s) 256
MluCI AATT 1 cut(s) 322
MluNI TGGCCA 1 cut(s) 256
MnlI CCTC 2 cut(s) 233, 395
Mox20I TGGCCA 1 cut(s) 256
MscI TGGCCA 1 cut(s) 256
MseI TTAA 4 cut(s) 222, 287, 321, 393
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 85, 305
NdeII GATC 3 cut(s) 181, 371, 375
NlaIII CATG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 98
PagI TCATGA 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 200
PspPI GGNCC 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 4 cut(s) 222, 287, 321, 393
Sau3AI GATC 3 cut(s) 181, 371, 375
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 2 cut(s) 266, 310
SetI ASST 5 cut(s) 34, 90, 216, 393, 406
SfaNI GCATC 2 cut(s) 178, 325
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 162, 374
TasI AATT 1 cut(s) 322
Tru1I TTAA 4 cut(s) 222, 287, 321, 393
Tru9I TTAA 4 cut(s) 222, 287, 321, 393
TscAI CASTG 2 cut(s) 81, 180
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 2 cut(s) 81, 180
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 204
VspI ATTAAT 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.