Rh2BG355100

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0021614
Physical Location & Seq
Reverse (-)
48741253 .. 48749617
8365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG355100.1

Sequence Viewer

Length: 708 bp
ATGGCATATCCCAGCAGTTTGGATTGCATAGCTTCTTTTGACTTTGACAATGAGTTGTTTCAGTCAGTTCCACCACTGCTTCTTCAGCTGGATACTTGTGACTGGGGGATGGGGGTTTTGGGAGATATTCTTTCTGTGTGTGGTACTCACGATAATCATATCGATGTGTGGACAGTGGAAGATCATGATGCACAAAAGTCCTGGACCAAAAAGGTTTATATTAATATGGATGTTGGGGGAGGACTACTAGGCTGGCCAAAGGGCACATATATACCGATGAAATACTTAACAGATGGGGCAGATGGGGCTCTATTGATGTTTAATTGGGATATTGATGCCTTGGTTTACTATCACCCAAGAAGAAACTACAGATCGATCATTTATCTTGACCTTAAGATTAGAGGTGTATACGGAGAAGGTTACGAAGTAATTCATCATGTTCCAAGCTTAATGTCACTAGCTCGAGGACATTTTGATAGATCGATCGAGCATGATGTAGAAGTACTGAATGTGTATTTAAGGCACAGGACCGGAACTACACCCAACGTCACAATCAAGAGACTGCATCTACAAAATAAGTTTGCTCGATCACGATCAATACTAAAGCCTCCTGTTTTTTCTCAAATTCGTTCGGAGAAATCTCACTATAGGCTTCCAAAATCTCACCACAGTCAACATGCAGCCTTAGCATTGCCGTCTAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

235

Amino Acids

26.82

Weight (kDa)

6.92

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021614)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8057844.1_g000001 Rmu_ssc0000019.1_g000001
rosa_samantha Rh2BG355100 Rh2DG372800
rosa_wichuraiana Rw2G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 624
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 2 cut(s) 145, 504
AflII CTTAAG 1 cut(s) 392
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 4 cut(s) 32, 88, 447, 461
AluI AGCT 4 cut(s) 32, 88, 447, 461
Alw26I GTCTC 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 1 cut(s) 624
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 204, 528
AsuHPI GGTGA 2 cut(s) 344, 656
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 2 cut(s) 204, 528
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 256
BanII GRGCYC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 692
BccI CCATC 3 cut(s) 103, 287, 296
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 202
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 3 cut(s) 248, 458, 699
BfmI CTRYAG 2 cut(s) 367, 646
BfrI CTTAAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
BmcAI AGTACT 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 2 cut(s) 204, 528
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 204, 528
BmrFI CCNGG 1 cut(s) 202
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 3 cut(s) 178, 325, 574
BmuI ACTGGG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 685
Bsa29I ATCGAT 3 cut(s) 162, 374, 482
BsaBI GATNNNNATC 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 689
Bse8I GATNNNNATC 1 cut(s) 592
BseBI CCWGG 1 cut(s) 202
BseCI ATCGAT 3 cut(s) 162, 374, 482
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 114, 235
BseJI GATNNNNATC 1 cut(s) 592
BseMI GCAATG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 1 cut(s) 256
BshVI ATCGAT 3 cut(s) 162, 374, 482
BsiEI CGRYCG 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 553
BsnI GGCC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 266, 310
Bsp143I GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
BspANI GGCC 1 cut(s) 256
BspDI ATCGAT 3 cut(s) 162, 374, 482
BspHI TCATGA 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 689
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
BssNAI GTATAC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 175, 671
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 685
BstF5I GGATG 2 cut(s) 114, 235
BstKTI GATC 7 cut(s) 184, 374, 378, 482, 486, 590, 596
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 3 cut(s) 85, 305, 686
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 680, 706
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 2 cut(s) 367, 646
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 409
Bsu15I ATCGAT 3 cut(s) 162, 374, 482
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 256
BsuTUI ATCGAT 3 cut(s) 162, 374, 482
BtsCI GGATG 2 cut(s) 114, 235
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 74, 180
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 204, 528
ClaI ATCGAT 3 cut(s) 162, 374, 482
Csp6I GTAC 2 cut(s) 144, 503
CviAII CATG 5 cut(s) 185, 437, 491, 677, 703
CviQI GTAC 2 cut(s) 144, 503
DdeI CTNAG 1 cut(s) 685
DpnI GATC 7 cut(s) 183, 373, 377, 481, 485, 589, 595
DpnII GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
EaeI YGGCCR 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 204, 528
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 5 cut(s) 188, 440, 494, 680, 706
FatI CATG 5 cut(s) 184, 436, 490, 676, 702
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 2 cut(s) 121, 242
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 3 cut(s) 248, 458, 699
GluI GCNGC 1 cut(s) 681
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 531
Hin1II CATG 5 cut(s) 188, 440, 494, 680, 706
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 445
HpaII CCGG 1 cut(s) 531
HphI GGTGA 2 cut(s) 344, 656
Hpy166II GTNNAC 4 cut(s) 171, 346, 409, 674
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 5 cut(s) 149, 185, 386, 556, 591
Hpy8I GTNNAC 4 cut(s) 171, 346, 409, 674
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 2 cut(s) 175, 671
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 27, 191, 565, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 305, 686
HpyF3I CTNAG 1 cut(s) 685
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 188, 440, 494, 680, 706
Kzo9I GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
LpnPI CCDG 9 cut(s) 25, 74, 88, 187, 214, 238, 511, 544, 624
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 3 cut(s) 178, 325, 574
MaeI CTAG 3 cut(s) 248, 458, 699
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 98, 419, 453, 547
MalI GATC 7 cut(s) 183, 373, 377, 481, 485, 589, 595
MboI GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
MboII GAAGA 3 cut(s) 74, 191, 372
MhlI GDGCHC 2 cut(s) 266, 310
MlsI TGGCCA 1 cut(s) 256
MluCI AATT 3 cut(s) 322, 429, 624
MluNI TGGCCA 1 cut(s) 256
MnlI CCTC 4 cut(s) 233, 395, 458, 618
Mox20I TGGCCA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 429
MscI TGGCCA 1 cut(s) 256
MseI TTAA 6 cut(s) 222, 287, 321, 393, 449, 518
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 3 cut(s) 85, 305, 686
NdeII GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
NlaIII CATG 5 cut(s) 188, 440, 494, 680, 706
NmuCI GTSAC 3 cut(s) 98, 453, 547
NspI RCATGY 2 cut(s) 680, 706
PaeR7I CTCGAG 1 cut(s) 462
PagI TCATGA 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 682
Ple19I CGATCG 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 200
PspPI GGNCC 2 cut(s) 204, 528
PspXI VCTCGAGB 1 cut(s) 462
PvuI CGATCG 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 145, 504
RsaNI GTAC 2 cut(s) 144, 503
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 6 cut(s) 222, 287, 321, 393, 449, 518
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 7 cut(s) 181, 371, 375, 479, 483, 587, 593
Sau96I GGNCC 2 cut(s) 204, 528
ScaI AGTACT 1 cut(s) 504
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 2 cut(s) 266, 310
SetI ASST 9 cut(s) 34, 90, 216, 393, 406, 421, 449, 463, 549
SfaNI GCATC 3 cut(s) 178, 325, 574
SfcI CTRYAG 2 cut(s) 367, 646
Sfr274I CTCGAG 1 cut(s) 462
SinI GGWCC 2 cut(s) 204, 528
SlaI CTCGAG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 392, 462
SmoI CTYRAG 2 cut(s) 392, 462
Sse9I AATT 3 cut(s) 322, 429, 624
SspMI CTAG 3 cut(s) 248, 458, 699
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 175, 671
TaiI ACGT 1 cut(s) 549
TaqI TCGA 6 cut(s) 162, 374, 463, 482, 486, 586
TasI AATT 3 cut(s) 322, 429, 624
TatI WGTACW 1 cut(s) 502
Tru1I TTAA 6 cut(s) 222, 287, 321, 393, 449, 518
Tru9I TTAA 6 cut(s) 222, 287, 321, 393, 449, 518
TscAI CASTG 2 cut(s) 81, 180
TseFI GTSAC 3 cut(s) 98, 453, 547
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 3 cut(s) 98, 453, 547
TspDTI ATGAA 2 cut(s) 293, 422
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 81, 180
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 204, 528
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 624
XceI RCATGY 2 cut(s) 680, 706
XhoI CTCGAG 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 3 cut(s) 248, 458, 699
ZrmI AGTACT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.