Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095892.1

Orthogroup ID

OG0023122

Physical Location & Seq

Genomic Coordinates Forward (+)

45 .. 570

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095892.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcttgccgggtctgcaactgtcttctttgcttacattggttttgattcagttgcaagcactgctgaagaggtgaagaatccccaacgagatttaccactgggtattggtgctgcactatctatatgctgtgcattgtatatgttggtttccatggtcattgttggtttagtgccttatcatgcaatggatcctgacacgcccatctctactgcatttgctagccatgggatgcaatgggctgcctatatcattactgttggagctgttactgctctctgttcgacattgatggggtctattcttccgcaggtatttaaatcggagtttatggttttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

114

Amino Acids

12.06

Weight (kDa)

4.93

Isoelectric Point (pI)

19.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8095892.1_g000001 Rmu_sc0006695.1_g000001 Rmu_sc0012042.1_g000016 Rmu_sc0039489.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	2 cut(s)	185, 198
AcuI	CTGAAG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	2 cut(s)	185, 198
ApeKI	GCWGC	2 cut(s)	113, 242
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	100, 229
BccI	CCATC	2 cut(s)	212, 286
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	114, 243
BlsI	GCNGC	2 cut(s)	115, 244
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	10
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	222
BmtI	GCTAGC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	153, 226
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	2 cut(s)	192, 242
BseDI	CCNNGG	2 cut(s)	153, 226
BseGI	GGATG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	192, 242
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	100, 229
BsgI	GTGCAG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	2 cut(s)	153, 226
BspACI	CCGC	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	185, 198
BsrDI	GCAATG	2 cut(s)	192, 242
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	153, 226
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	153, 226
Bst4CI	ACNGT	2 cut(s)	22, 259
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	6, 58, 223
BstDSI	CCRYGG	2 cut(s)	153, 226
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 62, 272
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	100, 229
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtgI	CCRYGG	2 cut(s)	153, 226
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 98
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	3 cut(s)	6, 58, 223
CviAII	CATG	3 cut(s)	154, 182, 227
CviJI	RGCY	3 cut(s)	225, 242, 266
CviKI_1	RGCY	3 cut(s)	225, 242, 266
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	153, 226
Eco57I	CTGAAG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	153, 226
ErhI	CCWWGG	2 cut(s)	153, 226
FaeI	CATG	3 cut(s)	157, 185, 230
FaiI	YATR	9 cut(s)	125, 127, 141, 143, 155, 183, 228, 249, 332
FatI	CATG	3 cut(s)	153, 181, 226
Fnu4HI	GCNGC	2 cut(s)	114, 243
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	114, 243
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	2 cut(s)	114, 243
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	157, 185, 230
HinfI	GANTC	2 cut(s)	47, 79
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	22, 259
HpyCH4V	TGCA	8 cut(s)	17, 56, 116, 134, 185, 215, 235, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 62, 272
Hsp92II	CATG	3 cut(s)	157, 185, 230
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	4 cut(s)	22, 86, 207, 296
Lsp1109I	GCAGC	2 cut(s)	100, 229
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	16, 80, 88, 296
MflI	RGATCY	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	14, 62, 272
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	2 cut(s)	153, 226
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	157, 185, 230
NlaIV	GGNNCC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	47, 79
PkrI	GCNGC	2 cut(s)	115, 244
PspN4I	GGNNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	114, 243
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	3 cut(s)	75, 268, 315
SfaNI	GCATC	1 cut(s)	222
SmiI	ATTTAAAT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	153, 226
SwaI	ATTTAAAT	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	22, 259
TaqI	TCGA	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	47, 79
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	67, 105
TseI	GCWGC	2 cut(s)	113, 242
TspRI	CASTG	2 cut(s)	67, 105
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.