Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039489.1

Orthogroup ID

OG0023122

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1600

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 539 bp

ccattctagtatttattgtcacagggctcctgtgtgtgggaatcaaggagagtacagtggcacaaggcattgcgacgatagcgaatgtatgtgcaatgttatttgtcatagttgctggtacttatttgggatttaagactggctggtctggatatcaacttcctactgggtacttcccctttggggtgaatggtatgcttgccgggtctgcaactgtcttctttgcttacattggttttgattcagttgcaagcactgctgaagaggtgaagaatccccaacgagatttaccactgggtattggtgctgcactatctatatgctgtgcattgtatatgttggtttccatggtcattgttggtttagtgccttatcatgcaatggatcctgacacgcccatctctactgcatttgctagccatgggatgcaatgggctgcctatatcattactgttggagctgttactgctctctgttcgacattgatggggtctattcttccgcaggtatttaaatcggagtttatggttttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

178

Amino Acids

18.73

Weight (kDa)

5.38

Isoelectric Point (pI)

14.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8095892.1_g000001 Rmu_sc0006695.1_g000001 Rmu_sc0012042.1_g000016 Rmu_sc0039489.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	495
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	2 cut(s)	379, 392
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	3 cut(s)	54, 120, 172
AfiI	CCNNNNNNNGG	2 cut(s)	36, 183
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
AlwI	GGATC	2 cut(s)	379, 392
ApeKI	GCWGC	2 cut(s)	307, 436
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	198, 279
AsuNHI	GCTAGC	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	294, 423
BccI	CCATC	2 cut(s)	406, 480
BcnI	CCSGG	1 cut(s)	204
BfaI	CTAG	2 cut(s)	7, 416
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	308, 437
BlsI	GCNGC	2 cut(s)	309, 438
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	28, 386
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	2 cut(s)	176, 304
BmsI	GCATC	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	419
BmuI	ACTGGG	2 cut(s)	176, 304
BpiI	GAAGAC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	347, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 183
Bse1I	ACTGG	3 cut(s)	144, 171, 299
Bse3DI	GCAATG	4 cut(s)	68, 101, 386, 436
BseDI	CCNNGG	2 cut(s)	347, 420
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	36, 183
BseMI	GCAATG	4 cut(s)	68, 101, 386, 436
BseNI	ACTGG	3 cut(s)	144, 171, 299
BseXI	GCAGC	2 cut(s)	294, 423
BsgI	GTGCAG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	36, 183
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	2 cut(s)	347, 420
BspACI	CCGC	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	28, 386
BspMI	ACCTGC	1 cut(s)	495
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	379, 392
BsrDI	GCAATG	4 cut(s)	68, 101, 386, 436
BsrI	ACTGG	3 cut(s)	144, 171, 299
BssECI	CCNNGG	2 cut(s)	347, 420
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	347, 420
Bst4CI	ACNGT	3 cut(s)	57, 216, 453
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	200, 252, 417
BstDSI	CCRYGG	2 cut(s)	347, 420
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 208, 256, 466
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	294, 423
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtgI	CCRYGG	2 cut(s)	347, 420
BtsCI	GGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	3 cut(s)	62, 254, 292
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	200, 252, 417
Csp6I	GTAC	3 cut(s)	53, 119, 171
CviAII	CATG	3 cut(s)	348, 376, 421
CviJI	RGCY	5 cut(s)	27, 143, 419, 436, 460
CviKI_1	RGCY	5 cut(s)	27, 143, 419, 436, 460
CviQI	GTAC	3 cut(s)	53, 119, 171
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
DraI	TTTAAA	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	347, 420
Eco24I	GRGCYC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	347, 420
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	347, 420
FaeI	CATG	3 cut(s)	351, 379, 424
FatI	CATG	3 cut(s)	347, 375, 420
Fnu4HI	GCNGC	2 cut(s)	308, 437
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	308, 437
FspBI	CTAG	2 cut(s)	7, 416
GluI	GCNGC	2 cut(s)	308, 437
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	3 cut(s)	351, 379, 424
HinfI	GANTC	3 cut(s)	41, 241, 273
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	198, 279
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	2 cut(s)	149, 388
Hpy99I	CGWCG	1 cut(s)	78
HpyCH4III	ACNGT	3 cut(s)	57, 216, 453
HpyCH4V	TGCA	9 cut(s)	94, 211, 250, 310, 328, 379, 409, 429, 534
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 208, 256, 466
Hsp92II	CATG	3 cut(s)	351, 379, 424
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	32, 457
Lsp1109I	GCAGC	2 cut(s)	294, 423
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	2 cut(s)	7, 416
MaeIII	GTNAC	2 cut(s)	18, 462
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	4 cut(s)	210, 274, 282, 490
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	134, 512
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	79, 208, 256, 466
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	2 cut(s)	347, 420
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	351, 379, 424
NlaIV	GGNNCC	2 cut(s)	28, 386
NmuCI	GTSAC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	41, 241, 273
PkrI	GCNGC	2 cut(s)	309, 438
PspN4I	GGNNCC	2 cut(s)	28, 386
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	3 cut(s)	54, 120, 172
RsaNI	GTAC	3 cut(s)	53, 119, 171
SaqAI	TTAA	2 cut(s)	134, 512
SatI	GCNGC	2 cut(s)	308, 437
Sau3AI	GATC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	3 cut(s)	269, 462, 509
SfaNI	GCATC	1 cut(s)	416
SmiI	ATTTAAAT	1 cut(s)	513
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	7, 416
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	347, 420
SwaI	ATTTAAAT	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	57, 216, 453
TaqI	TCGA	1 cut(s)	478
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	41, 241, 273
Tru1I	TTAA	2 cut(s)	134, 512
Tru9I	TTAA	2 cut(s)	134, 512
TscAI	CASTG	3 cut(s)	62, 261, 299
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	2 cut(s)	307, 436
Tsp45I	GTSAC	1 cut(s)	18
TspRI	CASTG	3 cut(s)	62, 261, 299
XspI	CTAG	2 cut(s)	7, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.