Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012042.1

Orthogroup ID

OG0023122

Physical Location & Seq

Genomic Coordinates Forward (+)

68576 .. 69999

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012042.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgttctgtatctttatatgtgttttctatttcaaggcattactctttggaggagcagacagtctgcctgtttttctagcccgtcaatacattcctgcgcttgatattatggttgacccatgtgcagccattctagtatttattgtcacagggctcctgtgtgtgggaatcaaggagagtacagtggcacaaggcattgcgacgatagcgaatgtatgtgcaatgttatttgtcatagttgctggtacttatttgggatttaagactggctggtctggatatcaacttcctactgggtacttcccctttggggtgaatggtatgcttgccgggtctgcaactgtcttctttgcttacattggttttgattcagttgcaagcactgctgaagaggtgaagaatccccaacgagatttaccactgggtattggtgctgcactatctatatgctgtgcattgtatatgttggtttccatggtcattgttggtttagtgccttatcatgcaatggatcctgacacgcccatctctactgcatttgctagccatgggatgcaatgggctgcctatatcattactgttggagctgttactgctctctgttcgacattgatggggtctattcttccgcaggtatttaaatcggagtttatggttttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

221

Amino Acids

23.51

Weight (kDa)

5.09

Isoelectric Point (pI)

16.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8095892.1_g000001 Rmu_sc0006695.1_g000001 Rmu_sc0012042.1_g000016 Rmu_sc0039489.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	2 cut(s)	506, 519
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	181, 247, 299
AfiI	CCNNNNNNNGG	2 cut(s)	163, 310
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	587
AluI	AGCT	1 cut(s)	587
AlwI	GGATC	2 cut(s)	506, 519
ApeKI	GCWGC	3 cut(s)	125, 434, 563
AspLEI	GCGC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	325, 406
AsuNHI	GCTAGC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	137, 421, 550
BccI	CCATC	2 cut(s)	533, 607
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	3 cut(s)	77, 134, 543
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	126, 435, 564
BlsI	GCNGC	3 cut(s)	127, 436, 565
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	155, 513
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	2 cut(s)	303, 431
BmsI	GCATC	1 cut(s)	543
BmtI	GCTAGC	1 cut(s)	546
BmuI	ACTGGG	2 cut(s)	303, 431
BpiI	GAAGAC	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	474, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 310
Bse1I	ACTGG	3 cut(s)	271, 298, 426
Bse3DI	GCAATG	4 cut(s)	195, 228, 513, 563
BseDI	CCNNGG	2 cut(s)	474, 547
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	163, 310
BseMI	GCAATG	4 cut(s)	195, 228, 513, 563
BseNI	ACTGG	3 cut(s)	271, 298, 426
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	137, 421, 550
BsgI	GTGCAG	2 cut(s)	144, 420
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	163, 310
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	511
Bsp19I	CCATGG	2 cut(s)	474, 547
BspACI	CCGC	1 cut(s)	629
BspLI	GGNNCC	2 cut(s)	155, 513
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	506, 519
BsrDI	GCAATG	4 cut(s)	195, 228, 513, 563
BsrI	ACTGG	3 cut(s)	271, 298, 426
BssECI	CCNNGG	2 cut(s)	474, 547
BssMI	GATC	1 cut(s)	511
BssT1I	CCWWGG	2 cut(s)	474, 547
Bst4CI	ACNGT	4 cut(s)	62, 184, 343, 580
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	327, 379, 544
BstDSI	CCRYGG	2 cut(s)	474, 547
BstF5I	GGATG	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 335, 383, 593
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	137, 421, 550
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BtgI	CCRYGG	2 cut(s)	474, 547
BtsCI	GGATG	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	189, 381, 419
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	327, 379, 544
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	180, 246, 298
CviAII	CATG	4 cut(s)	120, 475, 503, 548
CviJI	RGCY	7 cut(s)	80, 128, 154, 270, 546, 563, 587
CviKI_1	RGCY	7 cut(s)	80, 128, 154, 270, 546, 563, 587
CviQI	GTAC	3 cut(s)	180, 246, 298
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
DraI	TTTAAA	1 cut(s)	640
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	474, 547
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	474, 547
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	474, 547
FaeI	CATG	4 cut(s)	123, 478, 506, 551
FatI	CATG	4 cut(s)	119, 474, 502, 547
Fnu4HI	GCNGC	3 cut(s)	126, 435, 564
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	126, 435, 564
FspBI	CTAG	3 cut(s)	77, 134, 543
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	126, 435, 564
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	123, 478, 506, 551
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	168, 368, 400
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	325, 406
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	2 cut(s)	276, 515
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	205
HpyCH4III	ACNGT	4 cut(s)	62, 184, 343, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 335, 383, 593
Hsp92II	CATG	4 cut(s)	123, 478, 506, 551
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	3 cut(s)	53, 159, 584
Lsp1109I	GCAGC	3 cut(s)	137, 421, 550
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	3 cut(s)	77, 134, 543
MaeIII	GTNAC	2 cut(s)	145, 589
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	4 cut(s)	337, 401, 409, 617
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	2 cut(s)	44, 385
MseI	TTAA	2 cut(s)	261, 639
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	4 cut(s)	206, 335, 383, 593
NciI	CCSGG	1 cut(s)	331
NcoI	CCATGG	2 cut(s)	474, 547
NdeII	GATC	1 cut(s)	511
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	4 cut(s)	123, 478, 506, 551
NlaIV	GGNNCC	2 cut(s)	155, 513
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	168, 368, 400
PkrI	GCNGC	3 cut(s)	127, 436, 565
PspN4I	GGNNCC	2 cut(s)	155, 513
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	3 cut(s)	181, 247, 299
RsaNI	GTAC	3 cut(s)	180, 246, 298
SaqAI	TTAA	2 cut(s)	261, 639
SatI	GCNGC	3 cut(s)	126, 435, 564
Sau3AI	GATC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	3 cut(s)	396, 589, 636
SfaNI	GCATC	1 cut(s)	543
SmiI	ATTTAAAT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	3 cut(s)	77, 134, 543
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	474, 547
SwaI	ATTTAAAT	1 cut(s)	640
TaaI	ACNGT	4 cut(s)	62, 184, 343, 580
TaqI	TCGA	1 cut(s)	605
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	168, 368, 400
Tru1I	TTAA	2 cut(s)	261, 639
Tru9I	TTAA	2 cut(s)	261, 639
TscAI	CASTG	3 cut(s)	189, 388, 426
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	125, 434, 563
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	3 cut(s)	189, 388, 426
XspI	CTAG	3 cut(s)	77, 134, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.