Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117556.1

Orthogroup ID

OG0014801

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 541

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcggttccattagagcctggtattgagattcctagtcatgtagcttttgagacagggtataggatcaacatgggaggtccacatataacccccaagaatgacacattgtggaggacatgggaaccagatcaggcttttcttgtcaatgctgcatctgcgagaaatgtcacagccaatccacgctcaatcaaataccctgatggagtgtcggtcgaaattgcaccgaattgggtttatgccacagctcaggaaatggcagatgcaaatgtgttgaatcagaaatttaacatatcatgggcatttaaagttgaatatggcttcagctatcttattaggctgcatttctgtgacattgtaagtgcatctctaaatcatttgcttttcaatgtgtatatcaaccaactatctgctctagactcttttgatatctcaagcaggacaatggcattgtcagcagcttacttcatagactttgtgacaaatgtgtcaatgggatcagaccggatattggttcagattggtcctcccatgctaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.06

Weight (kDa)

5.22

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21500 FvH4_7g21500 FvH4_7g21500
malus_domestica	MD07G1191300.v1.1
prunus_persica	Prupe.2G229400_v2.0.a1 Prupe.2G229400_v2.0.a1
pyrus_communis	pycom07g18080
rosa_chinensis	RchiOBHm_Chr1g0365811
rosa_laevigata	RLG00000027394
rosa_multiflora	Rmu_co8117556.1_g000001 Rmu_sc0004311.1_g000010
rosa_roxburghii	Rroxscaffold_4G00290850
rosa_rugosa	Rorug01G0324400
rosa_samantha	Rh1BG294300 Rh1CG311000 Rh1DG326700
rosa_wichuraiana	Rw1G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	74, 505
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	277, 314, 388
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	4 cut(s)	47, 248, 327, 461
AluI	AGCT	4 cut(s)	47, 248, 327, 461
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	74, 505
ApeKI	GCWGC	3 cut(s)	152, 340, 458
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	80, 524
AvaII	GGWCC	2 cut(s)	80, 524
BbvI	GCAGC	3 cut(s)	139, 327, 470
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	36, 416
BisI	GCNGC	3 cut(s)	153, 341, 459
BlsI	GCNGC	3 cut(s)	154, 342, 460
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	80, 524
BmgT120I	GGNCC	2 cut(s)	80, 524
BmiI	GGNNCC	2 cut(s)	9, 126
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	164, 253, 374
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	139, 327, 470
Bsh1285I	CGRYCG	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	66, 130, 497
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	9, 126
BspPI	GGATC	2 cut(s)	74, 505
BssMI	GATC	3 cut(s)	66, 130, 497
Bst2UI	CCWGG	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	69, 133, 500
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	66, 130, 497
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 455
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	3 cut(s)	139, 327, 470
Cfr13I	GGNCC	2 cut(s)	80, 524
CviAII	CATG	5 cut(s)	41, 73, 120, 297, 532
CviJI	RGCY	9 cut(s)	19, 47, 137, 176, 248, 321, 327, 340, 461
CviKI_1	RGCY	9 cut(s)	19, 47, 137, 176, 248, 321, 327, 340, 461
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	68, 132, 499
DpnII	GATC	3 cut(s)	66, 130, 497
DraI	TTTAAA	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	80, 524
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	430
FaeI	CATG	5 cut(s)	44, 76, 123, 300, 535
FatI	CATG	5 cut(s)	40, 72, 119, 296, 531
Fnu4HI	GCNGC	3 cut(s)	153, 341, 459
Fsp4HI	GCNGC	3 cut(s)	153, 341, 459
FspBI	CTAG	2 cut(s)	36, 416
GluI	GCNGC	3 cut(s)	153, 341, 459
HapII	CCGG	1 cut(s)	505
Hin1II	CATG	5 cut(s)	44, 76, 123, 300, 535
HinfI	GANTC	3 cut(s)	31, 277, 419
HpaII	CCGG	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	282, 502, 519
Hpy188III	TCNNGA	2 cut(s)	251, 416
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	155, 224, 266, 343, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 455
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	44, 76, 123, 300, 535
Kzo9I	GATC	3 cut(s)	66, 130, 497
LpnPI	CCDG	9 cut(s)	6, 33, 42, 119, 141, 213, 236, 424, 518
Lsp1109I	GCAGC	3 cut(s)	139, 327, 470
LweI	GCATC	3 cut(s)	164, 253, 374
MaeI	CTAG	2 cut(s)	36, 416
MaeIII	GTNAC	3 cut(s)	169, 350, 478
MalI	GATC	3 cut(s)	68, 132, 499
MboI	GATC	3 cut(s)	66, 130, 497
MluCI	AATT	3 cut(s)	219, 229, 284
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	3 cut(s)	71, 108, 537
MseI	TTAA	2 cut(s)	288, 306
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	158, 455
NdeII	GATC	3 cut(s)	66, 130, 497
NlaIII	CATG	5 cut(s)	44, 76, 123, 300, 535
NlaIV	GGNNCC	2 cut(s)	9, 126
NmuCI	GTSAC	3 cut(s)	169, 350, 478
PfeI	GAWTC	2 cut(s)	31, 277
PkrI	GCNGC	3 cut(s)	154, 342, 460
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	9, 126
PspPI	GGNCC	2 cut(s)	80, 524
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	288, 306
SatI	GCNGC	3 cut(s)	153, 341, 459
Sau3AI	GATC	3 cut(s)	66, 130, 497
Sau96I	GGNCC	2 cut(s)	80, 524
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	5 cut(s)	49, 82, 250, 329, 463
SfaNI	GCATC	3 cut(s)	164, 253, 374
SinI	GGWCC	2 cut(s)	80, 524
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	219, 229, 284
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	36, 416
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	219, 229, 284
TfiI	GAWTC	2 cut(s)	31, 277
Tru1I	TTAA	2 cut(s)	288, 306
Tru9I	TTAA	2 cut(s)	288, 306
TseFI	GTSAC	3 cut(s)	169, 350, 478
TseI	GCWGC	3 cut(s)	152, 340, 458
Tsp45I	GTSAC	3 cut(s)	169, 350, 478
TspDTI	ATGAA	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	80, 524
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	415
XspI	CTAG	2 cut(s)	36, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.