Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8119298.1

Orthogroup ID

OG0025576

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 529

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8119298.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 400 bp

atgattgtccttcagggtcaagagaaggtctttctatccaagtcaaaggaggaatttggtgatgttaataagcagtacacgacaattacgtttacacccacacaagcagatcgttttgtcttggcatttcgaaattggctgaggcgacacggcaacagccaacctgagtggtttggtacaagcgaccagcaacctttgccctcaactatcttatcaaaacgtcagatgttggacagatttgagcagcacacacttaaatgttcatcatgtaaaggagcttatacagcattccagacatggaagaagttgctaattggagcagccgttgttttcgcctcaacggccgggatcccttcaggtctgcagctacggatcattttggctgggtttgcccttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009706 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016730 GO:0019439 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032441 GO:0032501 GO:0032502 GO:0033013 GO:0033015 GO:0034641 GO:0042170 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046149 GO:0046483 GO:0046700 GO:0048037 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051536 GO:0051540 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0090567 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

133

Amino Acids

14.99

Weight (kDa)

9.8

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025576)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8119298.1_g000001 Rmu_sc0004101.1_g000054 Rmu_sc0006045.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	343, 356, 380
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	77, 178
AluBI	AGCT	2 cut(s)	278, 367
AluI	AGCT	2 cut(s)	278, 367
AlwI	GGATC	3 cut(s)	343, 356, 380
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	244, 320, 364
ApoI	RAATTY	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	256, 332, 376
BceAI	ACGGC	3 cut(s)	166, 308, 357
BcnI	CCSGG	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	341
BisI	GCNGC	3 cut(s)	245, 321, 365
BlsI	GCNGC	3 cut(s)	246, 322, 366
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
BseMII	CTCAG	2 cut(s)	131, 156
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	256, 332, 376
BseYI	CCCAGC	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	109, 348, 372
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	132, 157
BspLI	GGNNCC	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	3 cut(s)	343, 356, 380
BspT104I	TTCGAA	1 cut(s)	130
BssMI	GATC	3 cut(s)	109, 348, 372
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	140, 165
BstKTI	GATC	3 cut(s)	112, 351, 375
BstMBI	GATC	3 cut(s)	109, 348, 372
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 284, 341, 389
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	256, 332, 376
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BstZI	CGGCCG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	76, 177
CspCI	CAANNNNNGTGG	2 cut(s)	149, 184
CviAII	CATG	2 cut(s)	267, 297
CviJI	RGCY	7 cut(s)	139, 159, 278, 323, 344, 367, 383
CviKI_1	RGCY	7 cut(s)	139, 159, 278, 323, 344, 367, 383
CviQI	GTAC	2 cut(s)	76, 177
DdeI	CTNAG	2 cut(s)	140, 165
DpnI	GATC	3 cut(s)	111, 350, 374
DpnII	GATC	3 cut(s)	109, 348, 372
EaeI	YGGCCR	1 cut(s)	342
EagI	CGGCCG	1 cut(s)	342
EclXI	CGGCCG	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	339
FaeI	CATG	2 cut(s)	270, 300
FaiI	YATR	3 cut(s)	268, 282, 298
FatI	CATG	2 cut(s)	266, 296
Fnu4HI	GCNGC	3 cut(s)	245, 321, 365
Fsp4HI	GCNGC	3 cut(s)	245, 321, 365
GluI	GCNGC	3 cut(s)	245, 321, 365
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	270, 300
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	78, 93
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	20, 292
Hpy8I	GTNNAC	2 cut(s)	78, 93
HpyAV	CCTTC	3 cut(s)	19, 20, 363
HpyCH4IV	ACGT	2 cut(s)	89, 220
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 284, 341, 389
HpyF3I	CTNAG	2 cut(s)	140, 165
HpySE526I	ACGT	2 cut(s)	89, 220
Hsp92II	CATG	2 cut(s)	270, 300
Kzo9I	GATC	3 cut(s)	109, 348, 372
LmnI	GCTCC	2 cut(s)	275, 317
LpnPI	CCDG	6 cut(s)	177, 200, 305, 342, 358, 369
Lsp1109I	GCAGC	3 cut(s)	256, 332, 376
MaeII	ACGT	2 cut(s)	89, 220
MalI	GATC	3 cut(s)	111, 350, 374
MboI	GATC	3 cut(s)	109, 348, 372
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	4 cut(s)	53, 84, 133, 312
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	43, 135, 211, 346
MseI	TTAA	2 cut(s)	66, 255
MslI	CAYNNNNRTG	1 cut(s)	256
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	196, 284, 341, 389
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	109, 348, 372
NlaIII	CATG	2 cut(s)	270, 300
NlaIV	GGNNCC	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PctI	GAATGC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	246, 322, 366
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	77, 178
RsaNI	GTAC	2 cut(s)	76, 177
RseI	CAYNNNNRTG	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	66, 255
SatI	GCNGC	3 cut(s)	245, 321, 365
Sau3AI	GATC	3 cut(s)	109, 348, 372
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	8 cut(s)	30, 92, 166, 196, 223, 280, 361, 369
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	53, 84, 133, 312
StyD4I	CCNGG	1 cut(s)	344
TaiI	ACGT	2 cut(s)	92, 223
TaqI	TCGA	1 cut(s)	130
TasI	AATT	4 cut(s)	53, 84, 133, 312
TatI	WGTACW	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	66, 255
Tru9I	TTAA	2 cut(s)	66, 255
TseI	GCWGC	3 cut(s)	244, 320, 364
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	385
XapI	RAATTY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.