Rmu_sc0006045.1_g000002

Pheophorbide A oxygenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006045.1
Physical Location & Seq
Forward (+)
8260 .. 14029
5770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006045.1_g000002.1.cds

Sequence Viewer

Length: 1272 bp
atggcaatcttgctctcttcctctgcttctgcttcaatcttcacatcttcaccatcccaatccctcaagccactgaacccatctctccctttcttgatctccaccgctaacccacatcgaaaaccttcaggaagagcaaagagtctttttcctttaagagtagcaacccaacctcagaccacagacccagatcgacccaccaaaacagagcaagatggggaaagttacaatcttggagatgaggttgaggatgaaagctcagcaaccaagttcaattggagagatcactggtacccagtttctttgattgaagatttggaccctaaattgcctaccccatttcagcttctgggtcgagacatagttttgtggttcgataggaacaaacaggaatgggtggctttagatgacaaatgccctcaccgcctcgcgccattatctgttacaggaaggagagatagagctaagcctttgccatttaaactggaagatagtggcccttggggcttttctggtgcaaatgagggcaacccacagattactgccaactttatagcgccttgttattatttaaataaaatagagattgatacaaagcttccactagttggtgatcaaaaatgggtaatatggatttgttccttcaatgttccaatggcaccagggaagactcgctctattgtttgtagtgctcgaaacttcttccagttcagcatgccagggcctgcttggtggcaggtgattcctagatggcatgaacattggacttcaaataaggtgtatgatggagacatgattgtccttcagggtcaagagaaggtctttctatccaagtcaaaggaggaatttggtgatgttaataagcagtacacgacaattacgtttacacccacacaagcagatcgttttgtcttggcatttcgaaattggctgaggcgacacggcaacagccaacctgagtggtttggtacaagcgaccagcaacctttgccctcaactatcttatcaaaacgtcagatgttggacagatttgagcagcacacacttaaatgttcatcatgtaaaggagcttatacagcattccagacatggaagaagttgctaattggagcagccgttgttttcgcctcaacggccgggatcccttcaggtctgcagctacggatcattttggctgggtttgcccttgtgagtgctgggttagcttatgctttacatgaactggaaaagaattttgtttttgttgattatgtacatgctgacattgaatag

Protein Analysis

423

Amino Acids

47.8

Weight (kDa)

8.41

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025576)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
AasI GACNNNNNNGTC 1 cut(s) 797
Acc36I ACCTGC 1 cut(s) 727
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 2 cut(s) 291, 658
AccB7I CCANNNNNTGG 1 cut(s) 608
AccII CGCG 1 cut(s) 431
AciI CCGC 2 cut(s) 105, 424
AclWI GGATC 3 cut(s) 1135, 1148, 1172
AcoI YGGCCR 1 cut(s) 1134
AcsI RAATTY 2 cut(s) 845, 1231
AcuI CTGAAG 3 cut(s) 111, 788, 1131
AfaI GTAC 4 cut(s) 293, 869, 970, 1254
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 6 cut(s) 36, 274, 311, 646, 771, 1268
AhlI ACTAGT 1 cut(s) 604
AjnI CCWGG 2 cut(s) 661, 718
AluBI AGCT 7 cut(s) 258, 346, 464, 598, 1070, 1159, 1205
AluI AGCT 7 cut(s) 258, 346, 464, 598, 1070, 1159, 1205
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 2 cut(s) 351, 783
AlwI GGATC 3 cut(s) 1135, 1148, 1172
AlwNI CAGNNNCTG 2 cut(s) 349, 725
AoxI GGCC 3 cut(s) 496, 722, 1134
ApeKI GCWGC 3 cut(s) 1036, 1112, 1156
ApoI RAATTY 2 cut(s) 845, 1231
Asp700I GAANNNNTTC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 433, 559
AspS9I GGNCC 3 cut(s) 319, 497, 722
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 5 cut(s) 42, 413, 623, 751, 863
AsuII TTCGAA 1 cut(s) 922
AvaII GGWCC 1 cut(s) 319
BamHI GGATCC 1 cut(s) 1140
BanI GGYRCC 2 cut(s) 291, 658
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 694
BbvCI CCTCAGC 1 cut(s) 932
BbvI GCAGC 3 cut(s) 1048, 1124, 1168
BccI CCATC 5 cut(s) 61, 88, 209, 744, 779
BceAI ACGGC 3 cut(s) 958, 1100, 1149
BciT130I CCWGG 2 cut(s) 663, 720
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 2 cut(s) 351, 783
BcuI ACTAGT 1 cut(s) 604
BfaI CTAG 2 cut(s) 605, 747
BfmI CTRYAG 1 cut(s) 1154
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 727
BglI GCCNNNNNGGC 2 cut(s) 504, 1133
BisI GCNGC 3 cut(s) 1037, 1113, 1157
BlpI GCTNAGC 2 cut(s) 259, 465
BlsI GCNGC 3 cut(s) 1038, 1114, 1158
Bme1390I CCNGG 3 cut(s) 663, 720, 1138
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 319, 497, 722
BmiI GGNNCC 4 cut(s) 293, 321, 660, 1142
BmrFI CCNGG 3 cut(s) 663, 720, 1138
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 932
Bpu1102I GCTNAGC 2 cut(s) 259, 465
Bpu14I TTCGAA 1 cut(s) 922
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 1138
BsaJI CCNNGG 3 cut(s) 500, 662, 719
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 1101, 1131
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 5 cut(s) 293, 296, 489, 706, 1227
BseBI CCWGG 2 cut(s) 663, 720
BseDI CCNNGG 3 cut(s) 500, 662, 719
BseGI GGATG 2 cut(s) 53, 256
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMII CTCAG 4 cut(s) 188, 273, 923, 948
BseNI ACTGG 5 cut(s) 293, 296, 489, 706, 1227
BseX3I CGGCCG 1 cut(s) 1134
BseXI GCAGC 3 cut(s) 1048, 1124, 1168
BseYI CCCAGC 2 cut(s) 1175, 1196
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 1137
BshFI GGCC 3 cut(s) 498, 724, 1136
BshNI GGYRCC 2 cut(s) 291, 658
BsiEI CGRYCG 1 cut(s) 1137
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 1137
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 2 cut(s) 351, 783
BsmI GAATGC 1 cut(s) 1079
BsnI GGCC 3 cut(s) 498, 724, 1136
Bsp119I TTCGAA 1 cut(s) 922
Bsp1286I GDGCHC 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 1252
Bsp143I GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
Bsp1720I GCTNAGC 2 cut(s) 259, 465
BspACI CCGC 2 cut(s) 105, 424
BspANI GGCC 3 cut(s) 498, 724, 1136
BspCNI CTCAG 4 cut(s) 187, 272, 924, 949
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 4 cut(s) 293, 321, 660, 1142
BspMAI CTGCAG 1 cut(s) 1158
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 3 cut(s) 1135, 1148, 1172
BspQI GCTCTTC 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 922
BspT107I GGYRCC 2 cut(s) 291, 658
BsrGI TGTACA 1 cut(s) 1252
BsrI ACTGG 5 cut(s) 293, 296, 489, 706, 1227
BssECI CCNNGG 3 cut(s) 500, 662, 719
BssMI GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
BssT1I CCWWGG 1 cut(s) 500
Bst2UI CCWGG 2 cut(s) 663, 720
Bst6I CTCTTC 2 cut(s) 22, 127
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 1 cut(s) 1252
BstBI TTCGAA 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 716, 726
BstDEI CTNAG 5 cut(s) 174, 259, 465, 932, 957
BstF5I GGATG 2 cut(s) 53, 256
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 2 cut(s) 433, 559
BstKTI GATC 7 cut(s) 99, 193, 286, 616, 904, 1143, 1167
BstMAI GTCTC 2 cut(s) 351, 783
BstMBI GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
BstMCI CGRYCG 1 cut(s) 1137
BstMWI GCNNNNNNNGC 7 cut(s) 423, 504, 988, 1076, 1133, 1181, 1202
BstNI CCWGG 2 cut(s) 663, 720
BstNSI RCATGY 2 cut(s) 718, 1259
BstSCI CCNGG 3 cut(s) 661, 718, 1136
BstSFI CTRYAG 1 cut(s) 1154
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 1048, 1124, 1168
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 1 cut(s) 1140
BstYI RGATCY 1 cut(s) 1140
BstZI CGGCCG 1 cut(s) 1134
BsuRI GGCC 3 cut(s) 498, 724, 1136
BtsCI GGATG 2 cut(s) 53, 256
BtsIMutI CAGTG 2 cut(s) 71, 286
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 716, 726
CaiI CAGNNNCTG 2 cut(s) 349, 725
CfoI GCGC 2 cut(s) 433, 559
Cfr13I GGNCC 3 cut(s) 319, 497, 722
Csp6I GTAC 4 cut(s) 292, 868, 969, 1253
CspCI CAANNNNNGTGG 2 cut(s) 941, 976
CviAII CATG 7 cut(s) 715, 755, 793, 1059, 1089, 1217, 1256
CviQI GTAC 4 cut(s) 292, 868, 969, 1253
DdeI CTNAG 5 cut(s) 174, 259, 465, 932, 957
DpnI GATC 7 cut(s) 98, 192, 285, 615, 903, 1142, 1166
DpnII GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
DraI TTTAAA 2 cut(s) 481, 573
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 1134
EagI CGGCCG 1 cut(s) 1134
Eam1104I CTCTTC 2 cut(s) 22, 127
EarI CTCTTC 2 cut(s) 22, 127
EclXI CGGCCG 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 319
Eco52I CGGCCG 1 cut(s) 1134
Eco57I CTGAAG 3 cut(s) 111, 788, 1131
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 661, 718
EcoT14I CCWWGG 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 7 cut(s) 718, 758, 796, 1062, 1092, 1220, 1259
FatI CATG 7 cut(s) 714, 754, 792, 1058, 1088, 1216, 1255
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 1037, 1113, 1157
FokI GGATG 2 cut(s) 40, 263
Fsp4HI GCNGC 3 cut(s) 1037, 1113, 1157
FspBI CTAG 2 cut(s) 605, 747
GlaI GCGC 2 cut(s) 432, 558
GluI GCNGC 3 cut(s) 1037, 1113, 1157
GsaI CCCAGC 2 cut(s) 1179, 1200
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 3 cut(s) 498, 724, 1136
HapII CCGG 1 cut(s) 1137
HhaI GCGC 2 cut(s) 433, 559
Hin1II CATG 7 cut(s) 718, 758, 796, 1062, 1092, 1220, 1259
Hin6I GCGC 2 cut(s) 431, 557
HinP1I GCGC 2 cut(s) 431, 557
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 3 cut(s) 142, 670, 742
HpaII CCGG 1 cut(s) 1137
HphI GGTGA 5 cut(s) 42, 413, 623, 751, 863
Hpy166II GTNNAC 2 cut(s) 870, 885
Hpy188I TCNGA 2 cut(s) 177, 1017
Hpy188III TCNNGA 5 cut(s) 94, 129, 356, 812, 1084
Hpy8I GTNNAC 2 cut(s) 870, 885
HpyAV CCTTC 6 cut(s) 135, 444, 652, 811, 812, 1155
HpyCH4IV ACGT 2 cut(s) 881, 1012
HpyCH4V TGCA 2 cut(s) 518, 1156
HpyF10VI GCNNNNNNNGC 7 cut(s) 423, 504, 988, 1076, 1133, 1181, 1202
HpyF3I CTNAG 5 cut(s) 174, 259, 465, 932, 957
HpySE526I ACGT 2 cut(s) 881, 1012
Hsp92II CATG 7 cut(s) 718, 758, 796, 1062, 1092, 1220, 1259
HspAI GCGC 2 cut(s) 431, 557
KpnI GGTACC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 1067, 1109
Lsp1109I GCAGC 3 cut(s) 1048, 1124, 1168
MaeI CTAG 2 cut(s) 605, 747
MaeII ACGT 2 cut(s) 881, 1012
MaeIII GTNAC 2 cut(s) 224, 442
MalI GATC 7 cut(s) 98, 192, 285, 615, 903, 1142, 1166
MboI GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
MboII GAAGA 9 cut(s) 9, 31, 39, 144, 323, 500, 679, 694, 1105
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 1 cut(s) 1140
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 7 cut(s) 274, 326, 845, 876, 925, 1104, 1231
MlyI GAGTC 2 cut(s) 151, 664
MmeI TCCRAC 1 cut(s) 1002
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 5 cut(s) 155, 480, 572, 858, 1047
MslI CAYNNNNRTG 1 cut(s) 1048
MspI CCGG 1 cut(s) 1137
MspR9I CCNGG 3 cut(s) 663, 720, 1138
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 1079
MvaI CCWGG 2 cut(s) 663, 720
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 7 cut(s) 423, 504, 988, 1076, 1133, 1181, 1202
NciI CCSGG 1 cut(s) 1138
NdeII GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
NlaIII CATG 7 cut(s) 718, 758, 796, 1062, 1092, 1220, 1259
NlaIV GGNNCC 4 cut(s) 293, 321, 660, 1142
NspI RCATGY 2 cut(s) 718, 1259
NspV TTCGAA 1 cut(s) 922
PaeI GCATGC 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 727
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 878
PctI GAATGC 1 cut(s) 1079
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 742
PflMI CCANNNNNTGG 1 cut(s) 608
PkrI GCNGC 3 cut(s) 1038, 1114, 1158
PleI GAGTC 2 cut(s) 150, 664
PpsI GAGTC 2 cut(s) 150, 664
Psp6I CCWGG 2 cut(s) 661, 718
PspFI CCCAGC 2 cut(s) 1175, 1196
PspGI CCWGG 2 cut(s) 661, 718
PspN4I GGNNCC 4 cut(s) 293, 321, 660, 1142
PspPI GGNCC 3 cut(s) 319, 497, 722
PstI CTGCAG 1 cut(s) 1158
PstNI CAGNNNCTG 2 cut(s) 349, 725
PsuI RGATCY 1 cut(s) 1140
RsaI GTAC 4 cut(s) 293, 869, 970, 1254
RsaNI GTAC 4 cut(s) 292, 868, 969, 1253
RseI CAYNNNNRTG 1 cut(s) 1048
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 5 cut(s) 155, 480, 572, 858, 1047
SatI GCNGC 3 cut(s) 1037, 1113, 1157
Sau3AI GATC 7 cut(s) 96, 190, 283, 613, 901, 1140, 1164
Sau96I GGNCC 3 cut(s) 319, 497, 722
SchI GAGTC 2 cut(s) 151, 664
ScrFI CCNGG 3 cut(s) 663, 720, 1138
SduI GDGCHC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 1154
SfuI TTCGAA 1 cut(s) 922
SinI GGWCC 1 cut(s) 319
SmiI ATTTAAAT 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 1048
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 604
SphI GCATGC 1 cut(s) 718
Sse9I AATT 7 cut(s) 274, 326, 845, 876, 925, 1104, 1231
SsiI CCGC 2 cut(s) 105, 424
SspMI CTAG 2 cut(s) 605, 747
StyD4I CCNGG 3 cut(s) 661, 718, 1136
StyI CCWWGG 1 cut(s) 500
SwaI ATTTAAAT 1 cut(s) 573
TaiI ACGT 2 cut(s) 884, 1015
TaqI TCGA 6 cut(s) 118, 193, 355, 375, 694, 922
TasI AATT 7 cut(s) 274, 326, 845, 876, 925, 1104, 1231
TatI WGTACW 2 cut(s) 867, 1252
TfiI GAWTC 1 cut(s) 742
Tru1I TTAA 5 cut(s) 155, 480, 572, 858, 1047
Tru9I TTAA 5 cut(s) 155, 480, 572, 858, 1047
TscAI CASTG 2 cut(s) 78, 293
TseI GCWGC 3 cut(s) 1036, 1112, 1156
TspDTI ATGAA 4 cut(s) 267, 771, 1044, 1233
TspGWI ACGGA 1 cut(s) 1177
TspRI CASTG 2 cut(s) 78, 293
Van91I CCANNNNNTGG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 845, 1231
XceI RCATGY 2 cut(s) 718, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 2 cut(s) 605, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.