Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004101.1

Orthogroup ID

OG0025576

Physical Location & Seq

Genomic Coordinates Reverse (-)

269164 .. 273460

Gene Structure 4297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004101.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgggtgaaatcactctgcaggttacaggaaggagagatagagctaagcctttgccatttaaactggaagatagtggcccttggggcttttctggtgcaaatgagggcaacccacagattactgccaactttatagcgccttgttattatttaaataaaatagagattgatacaaagcttccactagttggtgatcaaaaatgggttatatggatttgttccttcaatgttccaatggcaccagggaagactcgctctattgtttgtagtgctcgaaacttcttccagttcagcatgccagggcctgcttggtggcaggtgattcctagatggcatgaacattggacttcaaataaggtgtatgatggagacatgattgtccttcagggtcaagagaaggtctttctatccaagtcaaaggaggaatttggtgatgttaataagcagtacacgacaattacgtttacacccacacaagcagatcgttttgtcttggcatttcgaaattggctgaggcgacacggcaacagccaacctgagtggtttggtacaagcgaccagcaacctttgccctcaactatcttatcaaaacgtcagatgttggacagatttgagcagcacacacttaaatgttcatcatgtaaaggagcttatacagcattccagacatggaagaagttgctaattggagcagccgttgttttcgcctcaacggccgggatcccttcaggtctgcagctacggatcattttggctgggtttgcccttgtgagtgctgggttagcttatgctttacatgaactggaaaagaattttgtttttgttgattatgtacatgctgacattgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009706 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016730 GO:0019439 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032441 GO:0032501 GO:0032502 GO:0033013 GO:0033015 GO:0034641 GO:0042170 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046149 GO:0046483 GO:0046700 GO:0048037 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051536 GO:0051540 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0090567 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

283

Amino Acids

32.07

Weight (kDa)

8.9

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025576)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8119298.1_g000001 Rmu_sc0004101.1_g000054 Rmu_sc0006045.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	2 cut(s)	10, 307
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	188
AclWI	GGATC	3 cut(s)	715, 728, 752
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	425, 811
AcuI	CTGAAG	2 cut(s)	368, 711
AfaI	GTAC	3 cut(s)	449, 550, 834
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	226, 351, 848
AhlI	ACTAGT	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	241, 298
AluBI	AGCT	5 cut(s)	44, 178, 650, 739, 785
AluI	AGCT	5 cut(s)	44, 178, 650, 739, 785
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	3 cut(s)	715, 728, 752
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	76, 302, 714
ApeKI	GCWGC	3 cut(s)	616, 692, 736
ApoI	RAATTY	2 cut(s)	425, 811
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	77, 302
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	4 cut(s)	17, 203, 331, 443
AsuII	TTCGAA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	628, 704, 748
BccI	CCATC	2 cut(s)	324, 359
BceAI	ACGGC	3 cut(s)	538, 680, 729
BciT130I	CCWGG	2 cut(s)	243, 300
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	363
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	2 cut(s)	185, 327
BfmI	CTRYAG	2 cut(s)	17, 734
BfoI	RGCGCY	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	10, 307
BglI	GCCNNNNNGGC	2 cut(s)	84, 713
BisI	GCNGC	3 cut(s)	617, 693, 737
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	3 cut(s)	618, 694, 738
Bme1390I	CCNGG	3 cut(s)	243, 300, 718
BmgT120I	GGNCC	2 cut(s)	77, 302
BmiI	GGNNCC	2 cut(s)	240, 722
BmrFI	CCNGG	3 cut(s)	243, 300, 718
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	718
BsaJI	CCNNGG	3 cut(s)	80, 242, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	69, 286, 807
BseBI	CCWGG	2 cut(s)	243, 300
BseDI	CCNNGG	3 cut(s)	80, 242, 299
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	503, 528
BseNI	ACTGG	3 cut(s)	69, 286, 807
BseX3I	CGGCCG	1 cut(s)	714
BseXI	GCAGC	3 cut(s)	628, 704, 748
BseYI	CCCAGC	2 cut(s)	755, 776
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	3 cut(s)	78, 304, 716
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	78, 304, 716
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	832
Bsp143I	GATC	4 cut(s)	193, 481, 720, 744
Bsp1720I	GCTNAGC	1 cut(s)	45
BspANI	GGCC	3 cut(s)	78, 304, 716
BspCNI	CTCAG	2 cut(s)	504, 529
BspLI	GGNNCC	2 cut(s)	240, 722
BspMAI	CTGCAG	2 cut(s)	21, 738
BspMI	ACCTGC	2 cut(s)	10, 307
BspPI	GGATC	3 cut(s)	715, 728, 752
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	69, 286, 807
BssECI	CCNNGG	3 cut(s)	80, 242, 299
BssMI	GATC	4 cut(s)	193, 481, 720, 744
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	243, 300
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	296, 306
BstDEI	CTNAG	3 cut(s)	45, 512, 537
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	196, 484, 723, 747
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	4 cut(s)	193, 481, 720, 744
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 568, 656, 713, 761, 782
BstNI	CCWGG	2 cut(s)	243, 300
BstNSI	RCATGY	2 cut(s)	298, 839
BstSCI	CCNGG	3 cut(s)	241, 298, 716
BstSFI	CTRYAG	2 cut(s)	17, 734
BstV1I	GCAGC	3 cut(s)	628, 704, 748
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BstZI	CGGCCG	1 cut(s)	714
BsuRI	GGCC	3 cut(s)	78, 304, 716
BveI	ACCTGC	2 cut(s)	10, 307
Cac8I	GCNNGC	2 cut(s)	296, 306
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	77, 302
Csp6I	GTAC	3 cut(s)	448, 549, 833
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CviAII	CATG	7 cut(s)	295, 335, 373, 639, 669, 797, 836
CviQI	GTAC	3 cut(s)	448, 549, 833
DdeI	CTNAG	3 cut(s)	45, 512, 537
DpnI	GATC	4 cut(s)	195, 483, 722, 746
DpnII	GATC	4 cut(s)	193, 481, 720, 744
DraI	TTTAAA	2 cut(s)	61, 153
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	714
EagI	CGGCCG	1 cut(s)	714
EclXI	CGGCCG	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	714
Eco57I	CTGAAG	2 cut(s)	368, 711
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	241, 298
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	7 cut(s)	298, 338, 376, 642, 672, 800, 839
FatI	CATG	7 cut(s)	294, 334, 372, 638, 668, 796, 835
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	617, 693, 737
Fsp4HI	GCNGC	3 cut(s)	617, 693, 737
FspBI	CTAG	2 cut(s)	185, 327
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	617, 693, 737
GsaI	CCCAGC	2 cut(s)	759, 780
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	78, 304, 716
HapII	CCGG	1 cut(s)	717
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	7 cut(s)	298, 338, 376, 642, 672, 800, 839
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	250, 322
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	4 cut(s)	17, 203, 331, 443
Hpy166II	GTNNAC	2 cut(s)	450, 465
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	2 cut(s)	392, 664
Hpy8I	GTNNAC	2 cut(s)	450, 465
HpyAV	CCTTC	5 cut(s)	24, 232, 391, 392, 735
HpyCH4IV	ACGT	2 cut(s)	461, 592
HpyCH4V	TGCA	3 cut(s)	19, 98, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 568, 656, 713, 761, 782
HpyF3I	CTNAG	3 cut(s)	45, 512, 537
HpySE526I	ACGT	2 cut(s)	461, 592
Hsp92II	CATG	7 cut(s)	298, 338, 376, 642, 672, 800, 839
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	193, 481, 720, 744
LmnI	GCTCC	2 cut(s)	647, 689
Lsp1109I	GCAGC	3 cut(s)	628, 704, 748
MaeI	CTAG	2 cut(s)	185, 327
MaeII	ACGT	2 cut(s)	461, 592
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	195, 483, 722, 746
MboI	GATC	4 cut(s)	193, 481, 720, 744
MboII	GAAGA	4 cut(s)	80, 259, 274, 685
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	425, 456, 505, 684, 811
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	5 cut(s)	97, 415, 507, 583, 718
MseI	TTAA	4 cut(s)	60, 152, 438, 627
MslI	CAYNNNNRTG	1 cut(s)	628
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	3 cut(s)	243, 300, 718
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	2 cut(s)	243, 300
MwoI	GCNNNNNNNGC	6 cut(s)	84, 568, 656, 713, 761, 782
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	4 cut(s)	193, 481, 720, 744
NlaIII	CATG	7 cut(s)	298, 338, 376, 642, 672, 800, 839
NlaIV	GGNNCC	2 cut(s)	240, 722
NspI	RCATGY	2 cut(s)	298, 839
NspV	TTCGAA	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	618, 694, 738
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	241, 298
PspFI	CCCAGC	2 cut(s)	755, 776
PspGI	CCWGG	2 cut(s)	241, 298
PspN4I	GGNNCC	2 cut(s)	240, 722
PspPI	GGNCC	2 cut(s)	77, 302
PstI	CTGCAG	2 cut(s)	21, 738
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	3 cut(s)	449, 550, 834
RsaNI	GTAC	3 cut(s)	448, 549, 833
RseI	CAYNNNNRTG	1 cut(s)	628
SaqAI	TTAA	4 cut(s)	60, 152, 438, 627
SatI	GCNGC	3 cut(s)	617, 693, 737
Sau3AI	GATC	4 cut(s)	193, 481, 720, 744
Sau96I	GGNCC	2 cut(s)	77, 302
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	243, 300, 718
SduI	GDGCHC	1 cut(s)	274
SfcI	CTRYAG	2 cut(s)	17, 734
SfuI	TTCGAA	1 cut(s)	502
SmiI	ATTTAAAT	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	628
SpeI	ACTAGT	1 cut(s)	184
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	5 cut(s)	425, 456, 505, 684, 811
SspMI	CTAG	2 cut(s)	185, 327
StyD4I	CCNGG	3 cut(s)	241, 298, 716
StyI	CCWWGG	1 cut(s)	80
SwaI	ATTTAAAT	1 cut(s)	153
TaiI	ACGT	2 cut(s)	464, 595
TaqI	TCGA	2 cut(s)	274, 502
TasI	AATT	5 cut(s)	425, 456, 505, 684, 811
TatI	WGTACW	2 cut(s)	447, 832
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	60, 152, 438, 627
Tru9I	TTAA	4 cut(s)	60, 152, 438, 627
TseI	GCWGC	3 cut(s)	616, 692, 736
TspDTI	ATGAA	3 cut(s)	351, 624, 813
TspGWI	ACGGA	1 cut(s)	757
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	425, 811
XceI	RCATGY	2 cut(s)	298, 839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XspI	CTAG	2 cut(s)	185, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.