Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8135206.1

Orthogroup ID

OG0006165

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8135206.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggatgacgatcctcccctggcacagctcgtcttctcccaacccaccgagtacctgcgctttctcgatgaggccgccctttgggctcataaagttgtattggaggatttgcaaggtttgggtaaaggggtgaagaaggaattcattcatgttcgcattgatgtcagcggatcaccacttgaatgccctgagacttttccgagcattggacgtgtgagggtgaagcatcgtgggattctgctaaccctcaaagggacggtgattcggtccggggcaattaagatgtatgaaggggagaggaagtatatgtgccagaaatgcaagcacgagtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0042555 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097362 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM MCM_OB

Protein Analysis

111

Amino Acids

12.68

Weight (kDa)

8.46

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14050 AT2G14050
fragaria_vesca	FvH4_2g10130 FvH4_2g10130 FvH4_2g10130 FvH4_2g10130 FvH4_2g10130 FvH4_2g10130 FvH4_2g10130
malus_domestica	MD05G1047800.v1.1
prunus_persica	Prupe.8G065100_v2.0.a1 Prupe.8G065100_v2.0.a1 Prupe.8G065100_v2.0.a1 Prupe.8G065100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0267231
rosa_laevigata	RLG00000014019
rosa_multiflora	Rmu_co8135206.1_g000001 Rmu_ssc0000388.1_g000049
rosa_roxburghii	Rroxscaffold_7G00200990
rosa_rugosa	Rorug06G0030500.1 Rorug06G0030600 Rorug06G0030700
rosa_samantha	Rh6AG152600 Rh6BG152700 Rh6CG148600 Rh6DG136900
rosa_wichuraiana	Rw6G013150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AciI	CCGC	2 cut(s)	75, 168
AclWI	GGATC	2 cut(s)	5, 178
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	81, 206, 252
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	5, 178
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	140, 144
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	4 cut(s)	142, 165, 232, 271
AvaII	GGWCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	20, 271
Bme18I	GGWCC	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	20, 271
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	18, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 206, 252
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	18, 270
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	81, 206, 252
BseMII	CTCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	81, 206, 252
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	10, 170
BspACI	CCGC	2 cut(s)	75, 168
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	5, 178
BssECI	CCNNGG	2 cut(s)	18, 270
BssMI	GATC	2 cut(s)	10, 170
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	13, 173
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	10, 170
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 318
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	18, 269
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	267
CpoI	CGGWCCG	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	52
CspI	CGGWCCG	1 cut(s)	267
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	3 cut(s)	28, 74, 86
CviKI_1	RGCY	3 cut(s)	28, 74, 86
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	12, 172
DpnII	GATC	2 cut(s)	10, 170
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	1 cut(s)	152
FaiI	YATR	5 cut(s)	90, 150, 288, 306, 308
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	235, 262
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	4 cut(s)	142, 165, 232, 271
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	130, 284
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	112, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 318
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	10, 170
LpnPI	CCDG	6 cut(s)	5, 32, 68, 201, 283, 326
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	211
MalI	GATC	2 cut(s)	12, 172
MboI	GATC	2 cut(s)	10, 170
MboII	GAAGA	2 cut(s)	25, 145
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	140, 276
MnlI	CCTC	6 cut(s)	24, 64, 97, 210, 257, 291
MroXI	GAANNNNTTC	2 cut(s)	140, 144
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	20, 271
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	83, 318
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	10, 170
NlaIII	CATG	1 cut(s)	152
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	2 cut(s)	140, 144
PfeI	GAWTC	2 cut(s)	235, 262
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	181
Rsr2I	CGGWCCG	1 cut(s)	267
RsrII	CGGWCCG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	10, 170
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	20, 271
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	4 cut(s)	30, 57, 118, 214
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	140, 276
SsiI	CCGC	2 cut(s)	75, 168
StyD4I	CCNGG	2 cut(s)	18, 269
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	140, 276
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	235, 262
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	133, 137, 303
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	2 cut(s)	140, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.