Rmu_ssc0000388.1_g000049

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
Physical Location & Seq
Forward (+)
243941 .. 253099
9159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000049.1.cds

Sequence Viewer

Length: 1602 bp
atggcttcggcggcaaagaaaccctctcacgtccaagacttggcggcgtttctgatacgccaccactctcaccaacttcgctccatcgctctctccccagaccccaagcttcactaccccctctacgtcaattttgcagagctcatggatgacgatcctcccctggcacagctcgtcttctcccaacccaccgagtacctgcgctttctcgatgaggccgccctttgggctcataaagttgtattggaggatttgcaaggtttgggtaaaggggtgaagaaggaattcattcatgttcgcattgatgtcagcggatcaccacttgaatgccctgagacttttccgagcattggacgtgtgagggtgaagcatcgtgggattctgctaaccctcaaagggacggtgattcggtccggggcaattaagatgtatgaaggggagaggaagtatatgtgccagaaatgcaagcacgaattccttgtttatcctgaactggaatcgagaaactccataagactaccatcatattgcccctctcagactaaagcctgtgaaggcacaaagtttgcgcatttggaaggttctatatcatgccatgattaccaggaaatcaaaatccaggagagtacccatgtcttgggtgttggagccattccgcgctcaattcctgtcattctaaaagatgatcttgttgatattgttaaagctggagatgacataatcgttactgggatattaactgcaaagtggtctccagacttgaaagatgtgcgatgcgaccttgatcctgtattggttgctaactgcattaggagaactaatgagctgaagtcggaaattgatatacccgatgatgttatcacaaaattcaagcagttctggttagacttcaaagatacacctttgaaagggagaaatgccatcctacaaggaatatgcccacaaatctttggactgtttactgtaaagcttgcagttgcattaacacttattggaggcgtgcaacatgttgatgcttctgggacaaaggttcgaggcgagtctcatttgcttttggttggtgatccaggcactggaaaatctcagttcttgaagtttgctgcaaagttgagcaaccgatctgttattacaactggattaggaagcacaagcgctggattaaccgttactgcagtcaaggatggtggtgagtgggtgttggaagctggagcccttgttttggcagatggagggctttgttgtatagatgagtttgatagcatgagagaacacgatagggcaaccatacatgaagcaatggagcagcagacaataagtgtcgccaaggctggtcttgtgacaactctgagtactaaaacgattgtttttggagcaacaaatccaaagggccagtatgatcctgatcaatctctgtctgttaatacggcactctcgggtcccttactgagccgatttgatatagtccttgtactcttggatacaaagaatcctgaatgggatggagttgtgtcatctcacatcctttctgagggagaaccagacaaaggcaagccggacgaaaatttagcagacatctggccgtttcctatgctgcgtaggtaa

Protein Analysis

533

Amino Acids

58.52

Weight (kDa)

6.2

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 207
AccB7I CCANNNNNTGG 3 cut(s) 40, 637, 1073
AccII CGCG 1 cut(s) 658
AciI CCGC 5 cut(s) 11, 44, 219, 312, 656
AclWI GGATC 5 cut(s) 149, 322, 779, 1058, 1391
AcoI YGGCCR 1 cut(s) 1577
AcsI RAATTY 4 cut(s) 284, 473, 866, 1561
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 4 cut(s) 197, 628, 1351, 1470
AfeI AGCGCT 1 cut(s) 1153
AflIII ACRYGT 2 cut(s) 355, 1006
AgsI TTSAA 6 cut(s) 326, 763, 871, 892, 907, 1093
AjiI CACGTC 2 cut(s) 31, 356
AjnI CCWGG 4 cut(s) 162, 603, 618, 1066
AluBI AGCT 7 cut(s) 109, 142, 172, 707, 826, 970, 1205
AluI AGCT 7 cut(s) 109, 142, 172, 707, 826, 970, 1205
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 329, 756, 1047
AlwI GGATC 5 cut(s) 149, 322, 779, 1058, 1391
AlwNI CAGNNNCTG 1 cut(s) 1073
Ama87I CYCGRG 1 cut(s) 1432
Aor51HI AGCGCT 1 cut(s) 1153
AoxI GGCC 3 cut(s) 216, 1387, 1577
ApeKI GCWGC 3 cut(s) 1100, 1303, 1591
ApoI RAATTY 4 cut(s) 284, 473, 866, 1561
Asp700I GAANNNNTTC 2 cut(s) 284, 288
AspLEI GCGC 4 cut(s) 204, 571, 660, 1154
AspS9I GGNCC 3 cut(s) 411, 1387, 1436
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 7 cut(s) 62, 286, 309, 376, 415, 1073, 1199
AvaI CYCGRG 1 cut(s) 1432
AvaII GGWCC 2 cut(s) 411, 1436
BanII GRGCYC 3 cut(s) 144, 232, 1213
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 1087, 1315, 1578
BccI CCATC 6 cut(s) 92, 529, 929, 1175, 1220, 1493
BceAI ACGGC 2 cut(s) 1440, 1564
BciT130I CCWGG 4 cut(s) 164, 605, 620, 1068
BciVI GTATCC 1 cut(s) 1471
BclI TGATCA 1 cut(s) 1402
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 3 cut(s) 329, 756, 1047
BfmI CTRYAG 1 cut(s) 1170
BfoI RGCGCY 1 cut(s) 1155
BfuAI ACCTGC 1 cut(s) 207
BfuI GTATCC 1 cut(s) 1471
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 6 cut(s) 12, 45, 219, 1101, 1304, 1592
BlsI GCNGC 6 cut(s) 13, 46, 220, 1102, 1305, 1593
BmcAI AGTACT 1 cut(s) 1351
Bme1390I CCNGG 5 cut(s) 164, 415, 605, 620, 1068
Bme18I GGWCC 2 cut(s) 411, 1436
BmeT110I CYCGRG 1 cut(s) 1432
BmgBI CACGTC 2 cut(s) 31, 356
BmgT120I GGNCC 3 cut(s) 411, 1387, 1436
BmiI GGNNCC 4 cut(s) 649, 1210, 1437, 1438
BmrFI CCNGG 5 cut(s) 164, 415, 605, 620, 1068
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 3 cut(s) 379, 764, 1003
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 3 cut(s) 729, 738, 1227
BpuMI CCSGG 1 cut(s) 415
BsaBI GATNNNNATC 2 cut(s) 153, 1401
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 162, 414, 1323
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 1200, 1230
Bse1I ACTGG 5 cut(s) 498, 733, 1078, 1138, 1390
Bse3DI GCAATG 1 cut(s) 1302
Bse8I GATNNNNATC 2 cut(s) 153, 1401
BseBI CCWGG 4 cut(s) 164, 605, 620, 1068
BseDI CCNNGG 3 cut(s) 162, 414, 1323
BseGI GGATG 5 cut(s) 154, 921, 1186, 1504, 1518
BseJI GATNNNNATC 2 cut(s) 153, 1401
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 6 cut(s) 324, 551, 1097, 1337, 1436, 1518
BseNI ACTGG 5 cut(s) 498, 733, 1078, 1138, 1390
BseXI GCAGC 3 cut(s) 1087, 1315, 1578
Bsh1236I CGCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 218, 1389, 1579
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 1432
BsiSI CCGG 2 cut(s) 414, 1553
BslFI GGGAC 3 cut(s) 412, 1036, 1422
BsmAI GTCTC 3 cut(s) 329, 756, 1047
BsmFI GGGAC 3 cut(s) 412, 1036, 1422
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 3 cut(s) 218, 1389, 1579
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 1432
Bsp1286I GDGCHC 3 cut(s) 144, 232, 1213
Bsp143I GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
BspACI CCGC 5 cut(s) 11, 44, 219, 312, 656
BspANI GGCC 3 cut(s) 218, 1389, 1579
BspCNI CTCAG 6 cut(s) 325, 550, 1096, 1338, 1437, 1519
BspFNI CGCG 1 cut(s) 658
BspLI GGNNCC 4 cut(s) 649, 1210, 1437, 1438
BspMAI CTGCAG 1 cut(s) 1174
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 5 cut(s) 149, 322, 779, 1058, 1391
BspTNI GGTCTC 1 cut(s) 756
BsrDI GCAATG 1 cut(s) 1302
BsrI ACTGG 5 cut(s) 498, 733, 1078, 1138, 1390
BssECI CCNNGG 3 cut(s) 162, 414, 1323
BssMI GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
BssT1I CCWWGG 1 cut(s) 1323
Bst2UI CCWGG 4 cut(s) 164, 605, 620, 1068
Bst4CI ACNGT 4 cut(s) 403, 957, 964, 1165
BstC8I GCNNGC 4 cut(s) 467, 972, 1001, 1550
BstDEI CTNAG 6 cut(s) 333, 537, 1083, 1346, 1445, 1527
BstENI CCTNNNNNAGG 2 cut(s) 906, 1526
BstF5I GGATG 5 cut(s) 154, 921, 1186, 1504, 1518
BstFNI CGCG 1 cut(s) 658
BstH2I RGCGCY 1 cut(s) 1155
BstHHI GCGC 4 cut(s) 204, 571, 660, 1154
BstKTI GATC 8 cut(s) 157, 317, 688, 787, 1066, 1121, 1399, 1405
BstMAI GTCTC 3 cut(s) 329, 756, 1047
BstMBI GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 11, 227, 462
BstNI CCWGG 4 cut(s) 164, 605, 620, 1068
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 5 cut(s) 162, 413, 603, 618, 1066
BstSFI CTRYAG 1 cut(s) 1170
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 3 cut(s) 1087, 1315, 1578
BstV2I GAAGAC 1 cut(s) 169
BsuI GTATCC 1 cut(s) 1471
BsuRI GGCC 3 cut(s) 218, 1389, 1579
BtgZI GCGATG 2 cut(s) 70, 787
BtrI CACGTC 2 cut(s) 31, 356
BtsCI GGATG 5 cut(s) 154, 921, 1186, 1504, 1518
BtsIMutI CAGTG 1 cut(s) 1071
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 467, 972, 1001, 1550
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 4 cut(s) 204, 571, 660, 1154
Cfr13I GGNCC 3 cut(s) 411, 1387, 1436
CpoI CGGWCCG 1 cut(s) 411
Csp6I GTAC 4 cut(s) 196, 627, 1350, 1469
CspCI CAANNNNNGTGG 2 cut(s) 1165, 1200
CspI CGGWCCG 1 cut(s) 411
CviAII CATG 8 cut(s) 145, 293, 591, 596, 632, 1007, 1261, 1289
CviQI GTAC 4 cut(s) 196, 627, 1350, 1469
DdeI CTNAG 6 cut(s) 333, 537, 1083, 1346, 1445, 1527
DpnI GATC 8 cut(s) 156, 316, 687, 786, 1065, 1120, 1398, 1404
DpnII GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
EaeI YGGCCR 1 cut(s) 1577
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 1323
Eco24I GRGCYC 3 cut(s) 144, 232, 1213
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 2 cut(s) 411, 1436
Eco47III AGCGCT 1 cut(s) 1153
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 1432
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 2 cut(s) 906, 1526
EcoO109I RGGNCCY 1 cut(s) 1436
EcoRI GAATTC 2 cut(s) 284, 473
EcoRII CCWGG 4 cut(s) 162, 603, 618, 1066
EcoT14I CCWWGG 1 cut(s) 1323
EcoT38I GRGCYC 3 cut(s) 144, 232, 1213
ErhI CCWWGG 1 cut(s) 1323
FaeI CATG 8 cut(s) 148, 296, 594, 599, 635, 1010, 1264, 1292
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FaqI GGGAC 3 cut(s) 412, 1036, 1422
FatI CATG 8 cut(s) 144, 292, 590, 595, 631, 1006, 1260, 1288
FbaI TGATCA 1 cut(s) 1402
Fnu4HI GCNGC 6 cut(s) 12, 45, 219, 1101, 1304, 1592
FokI GGATG 5 cut(s) 161, 908, 1193, 1505, 1511
FriOI GRGCYC 3 cut(s) 144, 232, 1213
Fsp4HI GCNGC 6 cut(s) 12, 45, 219, 1101, 1304, 1592
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 4 cut(s) 203, 570, 659, 1153
GluI GCNGC 6 cut(s) 12, 45, 219, 1101, 1304, 1592
GsuI CTGGAG 3 cut(s) 729, 738, 1227
HaeII RGCGCY 1 cut(s) 1155
HaeIII GGCC 3 cut(s) 218, 1389, 1579
HapII CCGG 2 cut(s) 414, 1553
HhaI GCGC 4 cut(s) 204, 571, 660, 1154
Hin1II CATG 8 cut(s) 148, 296, 594, 599, 635, 1010, 1264, 1292
Hin6I GCGC 4 cut(s) 202, 569, 658, 1152
HinP1I GCGC 4 cut(s) 202, 569, 658, 1152
HindIII AAGCTT 2 cut(s) 107, 968
HinfI GANTC 5 cut(s) 379, 406, 497, 1040, 1486
HpaII CCGG 2 cut(s) 414, 1553
HphI GGTGA 7 cut(s) 62, 286, 309, 376, 415, 1073, 1199
Hpy166II GTNNAC 1 cut(s) 960
Hpy188I TCNGA 6 cut(s) 54, 345, 540, 835, 1347, 1528
Hpy188III TCNNGA 7 cut(s) 209, 488, 501, 755, 1090, 1400, 1490
Hpy8I GTNNAC 1 cut(s) 960
HpyAV CCTTC 4 cut(s) 274, 428, 548, 572
HpyCH4III ACNGT 4 cut(s) 403, 957, 964, 1165
HpyCH4IV ACGT 3 cut(s) 30, 126, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 227, 462
HpyF3I CTNAG 6 cut(s) 333, 537, 1083, 1346, 1445, 1527
HpySE526I ACGT 3 cut(s) 30, 126, 355
Hsp92II CATG 8 cut(s) 148, 296, 594, 599, 635, 1010, 1264, 1292
HspAI GCGC 4 cut(s) 202, 569, 658, 1152
KflI GGGWCCC 1 cut(s) 1436
Ksp22I TGATCA 1 cut(s) 1402
Kzo9I GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
LmnI GCTCC 5 cut(s) 86, 647, 1208, 1300, 1370
Lsp1109I GCAGC 3 cut(s) 1087, 1315, 1578
LweI GCATC 3 cut(s) 379, 764, 1003
MaeII ACGT 3 cut(s) 30, 126, 355
MaeIII GTNAC 3 cut(s) 724, 1165, 1336
MalI GATC 8 cut(s) 156, 316, 687, 786, 1065, 1120, 1398, 1404
MboI GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
MboII GAAGA 2 cut(s) 169, 289
MhlI GDGCHC 3 cut(s) 144, 232, 1213
MluCI AATT 8 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 3 cut(s) 625, 813, 1179
MroXI GAANNNNTTC 2 cut(s) 284, 288
MseI TTAA 6 cut(s) 423, 702, 737, 983, 1160, 1419
MslI CAYNNNNRTG 2 cut(s) 325, 1011
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 2 cut(s) 414, 1553
MspR9I CCNGG 5 cut(s) 164, 415, 605, 620, 1068
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 4 cut(s) 164, 605, 620, 1068
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 3 cut(s) 11, 227, 462
NciI CCSGG 1 cut(s) 415
NdeII GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
NlaIII CATG 8 cut(s) 148, 296, 594, 599, 635, 1010, 1264, 1292
NlaIV GGNNCC 4 cut(s) 649, 1210, 1437, 1438
NmuCI GTSAC 1 cut(s) 1336
NsbI TGCGCA 1 cut(s) 570
NspI RCATGY 1 cut(s) 1010
PciI ACATGT 1 cut(s) 1006
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 284, 288
PfeI GAWTC 4 cut(s) 379, 406, 497, 1486
PflMI CCANNNNNTGG 3 cut(s) 40, 637, 1073
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 6 cut(s) 13, 46, 220, 1102, 1305, 1593
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PpuMI RGGWCCY 1 cut(s) 1436
PscI ACATGT 1 cut(s) 1006
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 1436
Psp6I CCWGG 4 cut(s) 162, 603, 618, 1066
PspGI CCWGG 4 cut(s) 162, 603, 618, 1066
PspN4I GGNNCC 4 cut(s) 649, 1210, 1437, 1438
PspPI GGNCC 3 cut(s) 411, 1387, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PstI CTGCAG 1 cut(s) 1174
PstNI CAGNNNCTG 1 cut(s) 1073
RsaI GTAC 4 cut(s) 197, 628, 1351, 1470
RsaNI GTAC 4 cut(s) 196, 627, 1350, 1469
RseI CAYNNNNRTG 2 cut(s) 325, 1011
Rsr2I CGGWCCG 1 cut(s) 411
RsrII CGGWCCG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 6 cut(s) 423, 702, 737, 983, 1160, 1419
SatI GCNGC 6 cut(s) 12, 45, 219, 1101, 1304, 1592
Sau3AI GATC 8 cut(s) 154, 314, 685, 784, 1063, 1118, 1396, 1402
Sau96I GGNCC 3 cut(s) 411, 1387, 1436
ScaI AGTACT 1 cut(s) 1351
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 5 cut(s) 164, 415, 605, 620, 1068
SduI GDGCHC 3 cut(s) 144, 232, 1213
SfaNI GCATC 3 cut(s) 379, 764, 1003
SfcI CTRYAG 1 cut(s) 1170
SinI GGWCC 2 cut(s) 411, 1436
SmiMI CAYNNNNRTG 2 cut(s) 325, 1011
Sse9I AATT 8 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561
SsiI CCGC 5 cut(s) 11, 44, 219, 312, 656
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 5 cut(s) 162, 413, 603, 618, 1066
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 4 cut(s) 403, 957, 964, 1165
TaiI ACGT 3 cut(s) 33, 129, 358
TaqI TCGA 3 cut(s) 210, 500, 1033
TaqII GACCGA 1 cut(s) 399
TasI AATT 8 cut(s) 130, 284, 420, 473, 663, 837, 866, 1561
TatI WGTACW 2 cut(s) 1349, 1468
TauI GCSGC 3 cut(s) 14, 47, 221
TfiI GAWTC 4 cut(s) 379, 406, 497, 1486
Tru1I TTAA 6 cut(s) 423, 702, 737, 983, 1160, 1419
Tru9I TTAA 6 cut(s) 423, 702, 737, 983, 1160, 1419
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 1 cut(s) 1336
TseI GCWGC 3 cut(s) 1100, 1303, 1591
Tsp45I GTSAC 1 cut(s) 1336
TspDTI ATGAA 4 cut(s) 277, 281, 447, 1305
TspRI CASTG 1 cut(s) 1078
Van91I CCANNNNNTGG 3 cut(s) 40, 637, 1073
VpaK11BI GGWCC 2 cut(s) 411, 1436
XagI CCTNNNNNAGG 2 cut(s) 906, 1526
XapI RAATTY 4 cut(s) 284, 473, 866, 1561
XceI RCATGY 1 cut(s) 1010
XmnI GAANNNNTTC 2 cut(s) 284, 288
ZrmI AGTACT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.